Wall clock time and date at job start Mon Mar 30 2020 20:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50703 * 109.47326 * 2 1 4 4 C 1.38598 * 119.54649 * 125.00430 * 3 2 1 5 5 C 1.38585 * 119.34978 * 180.02562 * 4 3 2 6 6 C 1.38635 * 118.48675 * 0.26917 * 5 4 3 7 7 C 1.39269 * 119.06167 * 359.48561 * 6 5 4 8 8 C 1.48166 * 119.72439 * 180.22601 * 7 6 5 9 9 O 1.21511 * 120.00021 * 0.30142 * 8 7 6 10 10 N 1.34774 * 120.00050 * 180.29495 * 8 7 6 11 11 C 1.46499 * 120.00158 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47298 * 180.02562 * 11 10 8 13 13 N 1.46500 * 109.47259 * 179.97438 * 12 11 10 14 14 C 1.46504 * 119.99766 * 90.00237 * 13 12 11 15 15 C 1.36930 * 120.00619 * 270.00175 * 13 12 11 16 16 H 1.08004 * 119.99714 * 23.04474 * 15 13 12 17 17 C 1.38809 * 120.00459 * 203.04546 * 15 13 12 18 18 N 1.31622 * 119.99825 * 12.92670 * 17 15 13 19 19 Si 1.86804 * 120.00002 * 192.92601 * 17 15 13 20 20 H 1.48493 * 109.46940 * 60.00123 * 19 17 15 21 21 H 1.48502 * 109.46732 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47093 * 299.99816 * 19 17 15 23 23 N 1.31491 * 119.54859 * 305.02238 * 3 2 1 24 24 H 1.08999 * 109.47181 * 59.99272 * 1 2 3 25 25 H 1.08998 * 109.47260 * 180.02562 * 1 2 3 26 26 H 1.09009 * 109.46616 * 300.00157 * 1 2 3 27 27 H 1.09003 * 109.47229 * 240.00150 * 2 1 3 28 28 H 1.08994 * 109.47450 * 120.00358 * 2 1 3 29 29 H 1.07992 * 120.32943 * 0.02562 * 4 3 2 30 30 H 1.07995 * 120.75998 * 180.02562 * 5 4 3 31 31 H 1.08003 * 120.46978 * 179.69700 * 6 5 4 32 32 H 0.97007 * 120.00034 * 0.02562 * 10 8 7 33 33 H 1.09000 * 109.47276 * 300.00259 * 11 10 8 34 34 H 1.08999 * 109.47297 * 59.99544 * 11 10 8 35 35 H 1.09000 * 109.47530 * 300.00017 * 12 11 10 36 36 H 1.09006 * 109.47257 * 59.99821 * 12 11 10 37 37 H 1.08992 * 109.47391 * 95.12018 * 14 13 12 38 38 H 1.09001 * 109.47395 * 215.12557 * 14 13 12 39 39 H 1.09007 * 109.47094 * 335.12007 * 14 13 12 40 40 H 0.97002 * 119.99647 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.9123 1.8346 0.9876 5 6 3.3713 3.1422 0.9840 6 6 2.9253 3.9969 -0.0123 7 6 2.0449 3.5113 -0.9759 8 6 1.5628 4.4105 -2.0503 9 8 1.9401 5.5649 -2.0913 10 7 0.7061 3.9481 -2.9823 11 6 0.2299 4.8371 -4.0450 12 6 -0.7245 4.0699 -4.9622 13 7 -1.2012 4.9590 -6.0245 14 6 -0.4605 5.0573 -7.2847 15 6 -2.3389 5.6982 -5.8397 16 1 -2.6770 5.9281 -4.8400 17 6 -3.0577 6.1521 -6.9370 18 7 -2.8034 5.6705 -8.1352 19 14 -4.3860 7.4464 -6.7131 20 1 -3.7850 8.6789 -6.1432 21 1 -5.0007 7.7574 -8.0286 22 1 -5.4284 6.9312 -5.7895 23 7 1.6296 2.2510 -0.9368 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.2371 1.1449 1.7525 30 1 4.0577 3.4888 1.7424 31 1 3.2586 5.0237 -0.0428 32 1 0.4047 3.0266 -2.9495 33 1 -0.2944 5.6841 -3.6024 34 1 1.0795 5.1983 -4.6244 35 1 -0.2007 3.2227 -5.4048 36 1 -1.5742 3.7090 -4.3824 37 1 -0.8975 4.3784 -8.0169 38 1 -0.5147 6.0795 -7.6593 39 1 0.5819 4.7871 -7.1155 40 1 -3.3060 5.9874 -8.9020 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663201327.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:21:10 Heat of formation + Delta-G solvation = 13.699417 kcal Electronic energy + Delta-G solvation = -20732.863946 eV Core-core repulsion = 17548.132407 eV Total energy + Delta-G solvation = -3184.731539 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.78306 -38.92586 -36.05678 -34.46968 -34.19540 -32.76173 -31.24467 -30.20188 -28.16738 -25.85082 -25.15198 -24.52356 -22.97534 -21.59864 -20.65126 -20.38674 -17.96140 -16.72162 -16.64726 -16.13816 -15.48120 -15.37385 -14.92454 -14.69855 -14.45641 -14.04051 -13.82470 -13.57792 -13.28402 -13.17546 -12.57049 -12.41683 -12.31446 -12.17617 -11.69796 -11.36327 -11.14974 -10.86708 -10.82031 -10.59627 -10.33864 -10.20829 -10.17021 -9.94719 -9.87820 -9.58519 -9.23998 -8.66434 -8.53381 -6.77040 -5.71625 -3.19643 0.49565 0.96584 2.77814 3.27487 3.41655 3.46379 3.48664 3.74592 3.88787 4.32012 4.51708 4.65104 4.72143 4.83165 4.97226 5.09378 5.14045 5.23995 5.42083 5.53243 5.64165 5.66532 5.70268 5.81595 5.85833 5.87735 5.96370 6.07167 6.28885 6.35744 6.61487 6.68060 6.78924 6.91359 7.38982 7.50138 7.73670 7.82295 7.84094 8.37251 8.42134 9.23872 9.86221 10.34600 11.33255 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024769 B = 0.003348 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.170319 B = 8360.684648 C = 8763.312092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.072 4.072 3 C 0.128 3.872 4 C -0.154 4.154 5 C -0.079 4.079 6 C -0.121 4.121 7 C 0.092 3.908 8 C 0.562 3.438 9 O -0.538 6.538 10 N -0.700 5.700 11 C 0.092 3.908 12 C 0.144 3.856 13 N -0.597 5.597 14 C 0.161 3.839 15 C -0.260 4.260 16 H 0.069 0.931 17 C 0.004 3.996 18 N -0.907 5.907 19 Si 0.906 3.094 20 H -0.283 1.283 21 H -0.290 1.290 22 H -0.283 1.283 23 N -0.455 5.455 24 H 0.069 0.931 25 H 0.059 0.941 26 H 0.052 0.948 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.138 0.862 30 H 0.141 0.859 31 H 0.148 0.852 32 H 0.407 0.593 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.042 0.958 36 H 0.053 0.947 37 H 0.033 0.967 38 H 0.042 0.958 39 H -0.001 1.001 40 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.639 -11.627 18.306 24.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.110 4.110 3 C -0.012 4.012 4 C -0.174 4.174 5 C -0.105 4.105 6 C -0.142 4.142 7 C -0.047 4.047 8 C 0.346 3.654 9 O -0.415 6.415 10 N -0.350 5.350 11 C -0.033 4.033 12 C 0.015 3.985 13 N -0.320 5.320 14 C 0.016 3.984 15 C -0.390 4.390 16 H 0.086 0.914 17 C -0.194 4.194 18 N -0.552 5.552 19 Si 0.736 3.264 20 H -0.210 1.210 21 H -0.216 1.216 22 H -0.209 1.209 23 N -0.167 5.167 24 H 0.088 0.912 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.103 0.897 28 H 0.097 0.903 29 H 0.156 0.844 30 H 0.159 0.841 31 H 0.166 0.834 32 H 0.242 0.758 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.051 0.949 38 H 0.061 0.939 39 H 0.017 0.983 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 11.201 -10.998 17.355 23.401 hybrid contribution -0.194 0.656 0.773 1.032 sum 11.007 -10.342 18.127 23.595 Atomic orbital electron populations 1.21697 0.93810 1.01932 1.02957 1.20504 0.97302 0.89941 1.03232 1.21324 0.93391 0.96180 0.90311 1.22182 0.98458 0.96968 0.99835 1.21611 0.98078 0.93200 0.97633 1.22145 0.96363 1.01894 0.93787 1.21303 0.96345 0.90962 0.96101 1.17888 0.79722 0.86374 0.81426 1.90785 1.58232 1.17459 1.74983 1.45953 1.45204 1.16118 1.27744 1.22515 0.98711 0.94167 0.87953 1.20835 0.95320 0.91810 0.90514 1.43777 1.26952 1.48352 1.12883 1.20840 0.89469 1.00777 0.87272 1.19160 1.00862 1.26356 0.92591 0.91365 1.25025 0.98270 1.00290 0.95857 1.70067 1.42925 1.43561 0.98601 0.86311 0.81520 0.81846 0.76725 1.20974 1.21603 1.20878 1.67334 1.22857 1.02725 1.23827 0.91209 0.92193 0.92933 0.89737 0.90338 0.84442 0.84132 0.83433 0.75753 0.91315 0.91992 0.93974 0.92831 0.94857 0.93946 0.98255 0.93654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.77 37.16 0.36 -0.78 16 2 C -0.07 -0.52 6.33 -27.88 -0.18 -0.69 16 3 C 0.13 1.25 6.18 -82.60 -0.51 0.74 16 4 C -0.15 -1.22 9.72 -39.32 -0.38 -1.61 16 5 C -0.08 -0.67 10.17 -39.31 -0.40 -1.07 16 6 C -0.12 -1.39 9.63 -39.05 -0.38 -1.76 16 7 C 0.09 1.26 6.75 -83.01 -0.56 0.70 16 8 C 0.56 9.46 7.81 -12.18 -0.10 9.37 16 9 O -0.54 -10.68 16.32 5.36 0.09 -10.59 16 10 N -0.70 -11.44 5.54 -61.15 -0.34 -11.78 16 11 C 0.09 1.77 6.00 -4.04 -0.02 1.75 16 12 C 0.14 2.95 5.76 -4.04 -0.02 2.93 16 13 N -0.60 -15.26 2.92 -181.12 -0.53 -15.79 16 14 C 0.16 4.04 8.98 59.85 0.54 4.58 16 15 C -0.26 -7.27 9.65 -15.06 -0.15 -7.41 16 16 H 0.07 1.86 7.86 -52.48 -0.41 1.45 16 17 C 0.00 0.12 5.10 -17.43 -0.09 0.03 16 18 N -0.91 -26.71 10.71 55.49 0.59 -26.11 16 19 Si 0.91 22.17 29.57 -169.99 -5.03 17.15 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 N -0.46 -5.66 9.05 -6.06 -0.05 -5.71 16 24 H 0.07 0.66 7.94 -51.93 -0.41 0.25 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.42 8.14 -51.92 -0.42 -0.01 16 27 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.08 0.38 7.87 -51.93 -0.41 -0.03 16 29 H 0.14 0.66 7.95 -52.49 -0.42 0.24 16 30 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 31 H 0.15 1.65 7.64 -52.48 -0.40 1.25 16 32 H 0.41 5.86 7.80 -40.82 -0.32 5.54 16 33 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 34 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.04 0.80 8.07 -51.93 -0.42 0.38 16 36 H 0.05 1.08 8.04 -51.93 -0.42 0.67 16 37 H 0.03 0.89 7.34 -51.93 -0.38 0.51 16 38 H 0.04 1.14 7.34 -51.93 -0.38 0.76 16 39 H 0.00 -0.03 8.03 -51.92 -0.42 -0.44 16 40 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 340.26 15.07 5.13 5.13 Total: -1.00 -32.69 340.26 -8.08 -40.77 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -6.06 Total: 0.17 kcal Atomic # 6 Polarization: 8.66 SS G_CDS: -1.88 Total: 6.77 kcal Atomic # 7 Polarization: -59.07 SS G_CDS: -0.33 Total: -59.40 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.09 Total: -10.59 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.03 Total: 17.15 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.69 -8.08 -40.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663201327.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.468 kcal (2) G-P(sol) polarization free energy of solvation -32.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds