Wall clock time and date at job start Mon Mar 30 2020 20:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50703 * 109.47326 * 2 1 4 4 C 1.38598 * 119.54649 * 125.00430 * 3 2 1 5 5 C 1.38585 * 119.34978 * 180.02562 * 4 3 2 6 6 C 1.38635 * 118.48675 * 0.26917 * 5 4 3 7 7 C 1.39269 * 119.06167 * 359.48561 * 6 5 4 8 8 C 1.48166 * 119.72439 * 180.22601 * 7 6 5 9 9 O 1.21511 * 120.00021 * 0.30142 * 8 7 6 10 10 N 1.34774 * 120.00050 * 180.29495 * 8 7 6 11 11 C 1.46499 * 120.00158 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47298 * 180.02562 * 11 10 8 13 13 N 1.46500 * 109.47259 * 179.97438 * 12 11 10 14 14 C 1.46504 * 119.99766 * 90.00237 * 13 12 11 15 15 C 1.36930 * 120.00619 * 270.00175 * 13 12 11 16 16 H 1.08004 * 119.99714 * 23.04474 * 15 13 12 17 17 C 1.38809 * 120.00459 * 203.04546 * 15 13 12 18 18 N 1.31622 * 119.99825 * 12.92670 * 17 15 13 19 19 Si 1.86804 * 120.00002 * 192.92601 * 17 15 13 20 20 H 1.48493 * 109.46940 * 60.00123 * 19 17 15 21 21 H 1.48502 * 109.46732 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47093 * 299.99816 * 19 17 15 23 23 N 1.31491 * 119.54859 * 305.02238 * 3 2 1 24 24 H 1.08999 * 109.47181 * 59.99272 * 1 2 3 25 25 H 1.08998 * 109.47260 * 180.02562 * 1 2 3 26 26 H 1.09009 * 109.46616 * 300.00157 * 1 2 3 27 27 H 1.09003 * 109.47229 * 240.00150 * 2 1 3 28 28 H 1.08994 * 109.47450 * 120.00358 * 2 1 3 29 29 H 1.07992 * 120.32943 * 0.02562 * 4 3 2 30 30 H 1.07995 * 120.75998 * 180.02562 * 5 4 3 31 31 H 1.08003 * 120.46978 * 179.69700 * 6 5 4 32 32 H 0.97007 * 120.00034 * 0.02562 * 10 8 7 33 33 H 1.09000 * 109.47276 * 300.00259 * 11 10 8 34 34 H 1.08999 * 109.47297 * 59.99544 * 11 10 8 35 35 H 1.09000 * 109.47530 * 300.00017 * 12 11 10 36 36 H 1.09006 * 109.47257 * 59.99821 * 12 11 10 37 37 H 1.08992 * 109.47391 * 95.12018 * 14 13 12 38 38 H 1.09001 * 109.47395 * 215.12557 * 14 13 12 39 39 H 1.09007 * 109.47094 * 335.12007 * 14 13 12 40 40 H 0.97002 * 119.99647 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.9123 1.8346 0.9876 5 6 3.3713 3.1422 0.9840 6 6 2.9253 3.9969 -0.0123 7 6 2.0449 3.5113 -0.9759 8 6 1.5628 4.4105 -2.0503 9 8 1.9401 5.5649 -2.0913 10 7 0.7061 3.9481 -2.9823 11 6 0.2299 4.8371 -4.0450 12 6 -0.7245 4.0699 -4.9622 13 7 -1.2012 4.9590 -6.0245 14 6 -0.4605 5.0573 -7.2847 15 6 -2.3389 5.6982 -5.8397 16 1 -2.6770 5.9281 -4.8400 17 6 -3.0577 6.1521 -6.9370 18 7 -2.8034 5.6705 -8.1352 19 14 -4.3860 7.4464 -6.7131 20 1 -3.7850 8.6789 -6.1432 21 1 -5.0007 7.7574 -8.0286 22 1 -5.4284 6.9312 -5.7895 23 7 1.6296 2.2510 -0.9368 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.2371 1.1449 1.7525 30 1 4.0577 3.4888 1.7424 31 1 3.2586 5.0237 -0.0428 32 1 0.4047 3.0266 -2.9495 33 1 -0.2944 5.6841 -3.6024 34 1 1.0795 5.1983 -4.6244 35 1 -0.2007 3.2227 -5.4048 36 1 -1.5742 3.7090 -4.3824 37 1 -0.8975 4.3784 -8.0169 38 1 -0.5147 6.0795 -7.6593 39 1 0.5819 4.7871 -7.1155 40 1 -3.3060 5.9874 -8.9020 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663201327.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:21:10 Heat of formation + Delta-G solvation = -7.981734 kcal Electronic energy + Delta-G solvation = -20733.804111 eV Core-core repulsion = 17548.132407 eV Total energy + Delta-G solvation = -3185.671704 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.70632 -40.15420 -37.89349 -35.84064 -35.11800 -33.73317 -33.10219 -31.00644 -29.81047 -27.94012 -26.26124 -25.39837 -24.45535 -22.48271 -22.25276 -21.67232 -19.18870 -18.65579 -17.64636 -17.06606 -16.86674 -16.68226 -16.41195 -15.85674 -15.65423 -15.23287 -15.17046 -14.87766 -14.56485 -14.30404 -14.22723 -13.96193 -13.22964 -13.07442 -12.85905 -12.77994 -12.71718 -12.52087 -12.35791 -12.21661 -11.98397 -11.93273 -11.84748 -11.43369 -10.91261 -10.68218 -10.49910 -10.24386 -9.93489 -8.85930 -7.86231 -5.37068 -0.37216 0.23861 1.45445 1.48681 1.55098 1.66941 2.00903 2.50854 2.82056 3.00565 3.27581 3.60857 3.76048 3.87943 4.01882 4.09720 4.17293 4.23508 4.40859 4.43477 4.51503 4.57372 4.61647 4.79528 4.90571 4.99459 5.04057 5.07516 5.11421 5.14953 5.25351 5.28182 5.40601 5.46382 5.60146 5.65573 5.67540 6.29073 6.38318 6.81921 7.09428 7.11757 7.80631 8.24195 9.16965 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024769 B = 0.003348 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.170319 B = 8360.684648 C = 8763.312092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.069 4.069 3 C 0.114 3.886 4 C -0.136 4.136 5 C -0.072 4.072 6 C -0.130 4.130 7 C 0.060 3.940 8 C 0.560 3.440 9 O -0.577 6.577 10 N -0.694 5.694 11 C 0.114 3.886 12 C 0.148 3.852 13 N -0.615 5.615 14 C 0.174 3.826 15 C -0.272 4.272 16 H 0.069 0.931 17 C -0.049 4.049 18 N -0.936 5.936 19 Si 0.970 3.030 20 H -0.281 1.281 21 H -0.291 1.291 22 H -0.273 1.273 23 N -0.473 5.473 24 H 0.045 0.955 25 H 0.074 0.926 26 H 0.048 0.952 27 H 0.086 0.914 28 H 0.111 0.889 29 H 0.181 0.819 30 H 0.178 0.822 31 H 0.141 0.859 32 H 0.417 0.583 33 H 0.044 0.956 34 H 0.050 0.950 35 H 0.063 0.937 36 H 0.057 0.943 37 H 0.012 0.988 38 H 0.015 0.985 39 H 0.030 0.970 40 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.610 -13.401 21.065 27.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.107 4.107 3 C -0.027 4.027 4 C -0.155 4.155 5 C -0.098 4.098 6 C -0.151 4.151 7 C -0.077 4.077 8 C 0.346 3.654 9 O -0.457 6.457 10 N -0.344 5.344 11 C -0.013 4.013 12 C 0.021 3.979 13 N -0.338 5.338 14 C 0.029 3.971 15 C -0.402 4.402 16 H 0.087 0.913 17 C -0.244 4.244 18 N -0.582 5.582 19 Si 0.798 3.202 20 H -0.208 1.208 21 H -0.217 1.217 22 H -0.198 1.198 23 N -0.186 5.186 24 H 0.064 0.936 25 H 0.093 0.907 26 H 0.068 0.932 27 H 0.104 0.896 28 H 0.130 0.870 29 H 0.198 0.802 30 H 0.196 0.804 31 H 0.159 0.841 32 H 0.255 0.745 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.031 0.969 38 H 0.034 0.966 39 H 0.049 0.951 40 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 12.180 -12.807 20.146 26.800 hybrid contribution -0.416 1.086 0.045 1.164 sum 11.764 -11.721 20.191 26.143 Atomic orbital electron populations 1.21684 0.94604 1.02502 1.01610 1.20615 0.96540 0.88583 1.04930 1.21919 0.93717 0.96861 0.90159 1.22686 0.96204 0.97257 0.99358 1.22034 0.97795 0.92897 0.97042 1.22258 0.96173 1.02338 0.94313 1.20839 0.98845 0.91514 0.96476 1.18441 0.78806 0.86415 0.81725 1.90746 1.59570 1.19314 1.76079 1.45764 1.45332 1.16153 1.27195 1.21979 0.97584 0.93576 0.88161 1.20909 0.95726 0.91666 0.89581 1.44006 1.26740 1.49183 1.13916 1.20606 0.90971 0.98633 0.86892 1.19475 1.01431 1.26608 0.92714 0.91308 1.25798 1.00668 1.02286 0.95664 1.70220 1.44065 1.44751 0.99119 0.85308 0.79083 0.79271 0.76580 1.20771 1.21681 1.19837 1.67239 1.23589 1.02416 1.25364 0.93596 0.90669 0.93247 0.89581 0.87023 0.80182 0.80419 0.84078 0.74527 0.93786 0.93193 0.91845 0.92461 0.96945 0.96598 0.95120 0.94066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.77 71.98 0.70 -1.29 16 2 C -0.07 -0.77 6.33 29.85 0.19 -0.58 16 3 C 0.11 1.92 6.18 42.70 0.26 2.19 16 4 C -0.14 -1.56 9.72 22.44 0.22 -1.34 16 5 C -0.07 -0.96 10.17 22.45 0.23 -0.73 16 6 C -0.13 -2.84 9.63 22.61 0.22 -2.63 16 7 C 0.06 1.65 6.75 41.89 0.28 1.94 16 8 C 0.56 19.41 7.81 86.88 0.68 20.09 16 9 O -0.58 -23.90 16.32 -3.75 -0.06 -23.96 16 10 N -0.69 -23.11 5.54 -465.68 -2.58 -25.69 16 11 C 0.11 4.46 6.00 86.38 0.52 4.98 16 12 C 0.15 6.10 5.76 86.38 0.50 6.60 16 13 N -0.62 -31.84 2.92 -726.93 -2.12 -33.96 16 14 C 0.17 8.86 8.98 127.77 1.15 10.01 16 15 C -0.27 -15.40 9.65 84.03 0.81 -14.59 16 16 H 0.07 3.80 7.86 -2.91 -0.02 3.77 16 17 C -0.05 -2.79 5.10 84.86 0.43 -2.35 16 18 N -0.94 -56.16 10.71 21.65 0.23 -55.92 16 19 Si 0.97 46.08 29.57 68.60 2.03 48.11 16 20 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 21 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 22 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 23 N -0.47 -11.33 9.05 -173.08 -1.57 -12.89 16 24 H 0.04 0.84 7.94 -2.39 -0.02 0.82 16 25 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 27 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.11 0.53 7.87 -2.39 -0.02 0.51 16 29 H 0.18 0.55 7.95 -2.91 -0.02 0.53 16 30 H 0.18 1.01 8.06 -2.91 -0.02 0.98 16 31 H 0.14 3.18 7.64 -2.91 -0.02 3.16 16 32 H 0.42 12.10 7.80 -92.70 -0.72 11.37 16 33 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.06 2.35 8.07 -2.39 -0.02 2.33 16 36 H 0.06 2.31 8.04 -2.38 -0.02 2.29 16 37 H 0.01 0.67 7.34 -2.39 -0.02 0.66 16 38 H 0.02 0.85 7.34 -2.39 -0.02 0.84 16 39 H 0.03 1.33 8.03 -2.38 -0.02 1.31 16 40 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -73.00 340.26 2.42 -70.58 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: 0.31 Total: 11.47 kcal Atomic # 6 Polarization: 16.09 SS G_CDS: 6.19 Total: 22.28 kcal Atomic # 7 Polarization: -122.43 SS G_CDS: -6.04 Total: -128.47 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: -0.06 Total: -23.96 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Total: -73.00 2.42 -70.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663201327.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.596 kcal (2) G-P(sol) polarization free energy of solvation -72.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds