Wall clock time and date at job start Mon Mar 30 2020 20:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46975 * 2 1 4 4 H 1.09003 * 109.47012 * 55.00558 * 3 2 1 5 5 C 1.50701 * 109.46858 * 175.00027 * 3 2 1 6 6 H 1.07997 * 119.99834 * 120.00114 * 5 3 2 7 7 C 1.37880 * 120.00082 * 299.99998 * 5 3 2 8 8 N 1.31519 * 119.99933 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 119.99879 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47437 * 89.99953 * 9 7 5 11 11 H 1.48510 * 109.46900 * 209.99856 * 9 7 5 12 12 H 1.48502 * 109.47063 * 329.99663 * 9 7 5 13 13 N 1.46493 * 109.47123 * 295.00283 * 3 2 1 14 14 C 1.34769 * 120.00238 * 84.99803 * 13 3 2 15 15 O 1.21598 * 120.00225 * 0.02562 * 14 13 3 16 16 C 1.47437 * 120.00087 * 179.97438 * 14 13 3 17 17 C 1.39983 * 120.60449 * 5.42827 * 16 14 13 18 18 C 1.38334 * 118.36231 * 179.74717 * 17 16 14 19 19 C 1.38373 * 119.50904 * 0.24664 * 18 17 16 20 20 N 1.31852 * 121.21997 * 0.02562 * 19 18 17 21 21 C 1.32431 * 121.77408 * 359.97438 * 20 19 18 22 22 N 1.38264 * 119.82551 * 179.97438 * 21 20 19 23 23 C 1.46903 * 110.99844 * 295.12270 * 22 21 20 24 24 C 1.46896 * 111.00378 * 59.07902 * 22 21 20 25 25 H 1.09003 * 109.46871 * 300.00149 * 1 2 3 26 26 H 1.08993 * 109.47183 * 59.99966 * 1 2 3 27 27 H 1.09004 * 109.47269 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47217 * 240.00156 * 2 1 3 29 29 H 1.09001 * 109.46897 * 119.99892 * 2 1 3 30 30 H 0.96994 * 119.99949 * 180.02562 * 8 7 5 31 31 H 0.97004 * 119.99370 * 265.00255 * 13 3 2 32 32 H 1.07996 * 120.81479 * 0.02562 * 17 16 14 33 33 H 1.07997 * 120.24456 * 180.27032 * 18 17 16 34 34 H 1.08007 * 119.39244 * 179.97438 * 19 18 17 35 35 H 1.09007 * 109.47030 * 60.00112 * 23 22 21 36 36 H 1.09001 * 109.47094 * 179.97438 * 23 22 21 37 37 H 1.08994 * 109.47188 * 300.00585 * 23 22 21 38 38 H 1.08998 * 109.47118 * 64.83785 * 24 22 21 39 39 H 1.09001 * 109.47368 * 184.84792 * 24 22 21 40 40 H 1.09008 * 109.47225 * 304.84470 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9816 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3366 2.1729 9 14 6.0049 0.8813 1.3817 10 1 6.4417 2.1142 2.0849 11 1 6.4396 -0.3099 2.1549 12 1 6.6135 0.8416 0.0277 13 7 1.6524 2.0975 -1.2517 14 6 0.4351 2.6643 -1.3669 15 8 -0.3413 2.6326 -0.4316 16 6 0.0453 3.3240 -2.6265 17 6 0.8824 3.2716 -3.7472 18 6 0.4684 3.9022 -4.9067 19 6 -0.7462 4.5649 -4.9258 20 7 -1.5183 4.6076 -3.8578 21 6 -1.1708 4.0214 -2.7223 22 7 -2.0113 4.0920 -1.6267 23 6 -2.1456 5.4766 -1.1546 24 6 -3.3251 3.5103 -1.9325 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8293 -0.0612 2.9498 31 1 2.2719 2.1231 -1.9977 32 1 1.8261 2.7479 -3.7088 33 1 1.0884 3.8772 -5.7907 34 1 -1.0674 5.0570 -5.8320 35 1 -2.5586 6.0940 -1.9523 36 1 -2.8122 5.5035 -0.2926 37 1 -1.1660 5.8597 -0.8689 38 1 -3.2135 2.4439 -2.1287 39 1 -3.9934 3.6558 -1.0838 40 1 -3.7432 3.9997 -2.8123 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358056708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:17:45 Heat of formation + Delta-G solvation = 20.827841 kcal Electronic energy + Delta-G solvation = -22117.588050 eV Core-core repulsion = 18933.165622 eV Total energy + Delta-G solvation = -3184.422428 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.66078 -38.42189 -36.79043 -34.88622 -32.88587 -32.00550 -30.85418 -30.21621 -27.46318 -26.98762 -24.93840 -24.35128 -22.90878 -21.47353 -20.48765 -19.26119 -17.78637 -16.91939 -16.67752 -15.79535 -15.31731 -15.09038 -14.74028 -14.34925 -14.21792 -13.95149 -13.58381 -13.27139 -12.86059 -12.62251 -12.49622 -12.14537 -11.92615 -11.78963 -11.57038 -11.44002 -11.22253 -10.93902 -10.81764 -10.28386 -10.14287 -9.84348 -9.81924 -9.56834 -9.03457 -8.98451 -8.86850 -8.46406 -8.17576 -7.70735 -6.09836 -4.19022 0.81478 1.15008 3.25506 3.32314 3.33629 3.38301 3.75032 4.06800 4.19801 4.37070 4.53053 4.78889 4.95550 5.13750 5.21014 5.24131 5.40665 5.47629 5.63424 5.64653 5.78723 5.96302 5.99764 6.00331 6.09833 6.39097 6.45077 6.52900 6.72745 6.98958 7.10403 7.26137 7.41370 7.43228 7.52775 7.65988 7.76798 7.86522 7.95656 8.22362 8.73439 8.83394 9.24335 9.48974 10.95437 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023079 B = 0.005014 C = 0.004552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.927522 B = 5582.708753 C = 6150.209616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.273 3.727 4 H 0.050 0.950 5 C -0.533 4.533 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.709 5.709 14 C 0.541 3.459 15 O -0.500 6.500 16 C -0.143 4.143 17 C -0.047 4.047 18 C -0.184 4.184 19 C 0.120 3.880 20 N -0.520 5.520 21 C 0.339 3.661 22 N -0.469 5.469 23 C 0.037 3.963 24 C 0.036 3.964 25 H 0.050 0.950 26 H 0.039 0.961 27 H 0.020 0.980 28 H 0.029 0.971 29 H 0.098 0.902 30 H 0.264 0.736 31 H 0.383 0.617 32 H 0.143 0.857 33 H 0.139 0.861 34 H 0.155 0.845 35 H 0.033 0.967 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.340 6.584 -12.692 16.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 C 0.172 3.828 4 H 0.068 0.932 5 C -0.572 4.572 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.359 5.359 14 C 0.325 3.675 15 O -0.376 6.376 16 C -0.150 4.150 17 C -0.073 4.073 18 C -0.204 4.204 19 C -0.039 4.039 20 N -0.233 5.233 21 C 0.109 3.891 22 N -0.191 5.191 23 C -0.110 4.110 24 C -0.111 4.111 25 H 0.070 0.930 26 H 0.058 0.942 27 H 0.039 0.961 28 H 0.048 0.952 29 H 0.116 0.884 30 H 0.074 0.926 31 H 0.215 0.785 32 H 0.160 0.840 33 H 0.156 0.844 34 H 0.172 0.828 35 H 0.052 0.948 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -8.486 6.610 -11.405 15.678 hybrid contribution 1.839 -0.026 -0.980 2.084 sum -6.648 6.584 -12.385 15.522 Atomic orbital electron populations 1.21830 0.98243 0.97895 1.01375 1.21933 0.92690 0.99815 1.02122 1.18755 0.94039 0.89103 0.80932 0.93191 1.21231 0.90797 1.38917 1.06242 0.92222 1.24874 0.98476 0.94843 0.95429 1.69896 1.35060 1.37626 1.09310 0.86481 0.85024 0.77622 0.78145 1.20608 1.21101 1.19909 1.46461 1.14455 1.56469 1.18482 1.17691 0.83187 0.80053 0.86612 1.90813 1.50597 1.57577 1.38567 1.21244 0.95602 1.01579 0.96591 1.21894 0.98697 0.95066 0.91685 1.22043 0.98532 1.00630 0.99229 1.22642 0.90469 0.94941 0.95889 1.67811 1.35082 1.19983 1.00403 1.19824 0.90929 0.90421 0.87876 1.59858 1.12202 1.19811 1.27218 1.22334 1.02495 0.86575 0.99632 1.22328 0.88460 0.99975 1.00353 0.93044 0.94224 0.96068 0.95203 0.88364 0.92598 0.78458 0.83962 0.84360 0.82822 0.94804 0.90626 0.91549 0.91543 0.90812 0.94558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.51 37.16 0.32 -2.75 16 2 C -0.13 -3.08 5.45 -26.73 -0.15 -3.22 16 3 C 0.27 6.83 2.24 -69.08 -0.15 6.67 16 4 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 5 C -0.53 -13.95 8.73 -34.44 -0.30 -14.25 16 6 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.58 11.29 55.43 0.63 -23.95 16 9 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 13 N -0.71 -14.70 4.97 -56.01 -0.28 -14.98 16 14 C 0.54 11.04 6.32 -12.52 -0.08 10.96 16 15 O -0.50 -11.65 12.22 5.28 0.06 -11.58 16 16 C -0.14 -2.40 5.91 -104.64 -0.62 -3.02 16 17 C -0.05 -0.61 9.63 -38.89 -0.37 -0.98 16 18 C -0.18 -1.94 10.09 -39.50 -0.40 -2.34 16 19 C 0.12 1.35 11.16 -17.49 -0.20 1.15 16 20 N -0.52 -7.46 9.42 -12.20 -0.11 -7.58 16 21 C 0.34 5.53 5.34 -155.19 -0.83 4.70 16 22 N -0.47 -7.72 2.96 -188.74 -0.56 -8.28 16 23 C 0.04 0.52 9.46 60.07 0.57 1.08 16 24 C 0.04 0.50 9.52 60.06 0.57 1.07 16 25 H 0.05 1.23 7.84 -51.93 -0.41 0.82 16 26 H 0.04 0.88 5.64 -51.93 -0.29 0.58 16 27 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 30 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 31 H 0.38 6.88 6.67 -40.82 -0.27 6.60 16 32 H 0.14 1.60 6.55 -52.49 -0.34 1.26 16 33 H 0.14 0.99 8.06 -52.49 -0.42 0.56 16 34 H 0.15 1.20 8.06 -52.48 -0.42 0.77 16 35 H 0.03 0.44 7.93 -51.92 -0.41 0.03 16 36 H 0.07 0.95 8.07 -51.93 -0.42 0.53 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.07 0.91 8.04 -51.93 -0.42 0.49 16 40 H 0.04 0.48 7.68 -51.92 -0.40 0.08 16 LS Contribution 326.05 15.07 4.91 4.91 Total: -1.00 -30.90 326.05 -7.85 -38.74 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -5.74 Total: 6.50 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: -1.73 Total: 0.77 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: -0.33 Total: -54.79 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.06 Total: -11.58 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.90 -7.85 -38.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358056708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.571 kcal (2) G-P(sol) polarization free energy of solvation -30.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds