Wall clock time and date at job start Mon Mar 30 2020 20:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.79178 * 2 1 4 4 C 1.50941 * 109.75271 * 120.71746 * 2 1 3 5 5 C 1.34120 * 128.18625 * 315.32111 * 4 2 1 6 6 C 1.41097 * 107.32674 * 179.74374 * 5 4 2 7 7 C 1.35070 * 107.48365 * 0.03979 * 6 5 4 8 8 N 1.35726 * 108.16324 * 0.07100 * 7 6 5 9 9 C 1.46808 * 128.02812 * 179.76390 * 8 7 6 10 10 C 1.53367 * 108.20685 * 196.61302 * 9 8 7 11 11 N 1.46960 * 109.78009 * 309.80297 * 10 9 8 12 12 C 1.46899 * 110.99932 * 307.24372 * 11 10 9 13 13 C 1.50704 * 109.47253 * 294.32146 * 12 11 10 14 14 O 1.21282 * 119.99745 * 354.48715 * 13 12 11 15 15 N 1.34771 * 119.99932 * 174.49007 * 13 12 11 16 16 C 1.46501 * 119.99660 * 179.97438 * 15 13 12 17 17 C 1.50699 * 109.47126 * 180.02562 * 16 15 13 18 18 H 1.08010 * 119.99930 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00302 * 180.02562 * 17 16 15 20 20 N 1.31510 * 119.99901 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 120.00094 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46894 * 90.00087 * 21 19 17 23 23 H 1.48495 * 109.46690 * 209.99704 * 21 19 17 24 24 H 1.48495 * 109.46967 * 329.99728 * 21 19 17 25 25 H 1.09001 * 109.47321 * 180.72200 * 1 2 3 26 26 H 1.08999 * 109.47170 * 300.72879 * 1 2 3 27 27 H 1.09003 * 109.47112 * 60.72746 * 1 2 3 28 28 H 1.08010 * 126.33817 * 359.74486 * 5 4 2 29 29 H 1.08001 * 126.26194 * 180.02562 * 6 5 4 30 30 H 1.08007 * 125.91812 * 180.02562 * 7 6 5 31 31 H 1.08998 * 109.71653 * 76.93655 * 9 8 7 32 32 H 1.08998 * 109.72002 * 316.28913 * 9 8 7 33 33 H 1.08999 * 109.41732 * 189.71361 * 10 9 8 34 34 H 1.08996 * 109.37004 * 69.86739 * 10 9 8 35 35 H 1.08998 * 109.47074 * 174.31820 * 12 11 10 36 36 H 1.08999 * 109.47102 * 54.31785 * 12 11 10 37 37 H 0.96997 * 120.00190 * 0.02562 * 15 13 12 38 38 H 1.08997 * 109.47067 * 60.00269 * 16 15 13 39 39 H 1.09001 * 109.47611 * 299.99953 * 16 15 13 40 40 H 0.97001 * 120.00209 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8991 1.0256 0.0000 4 6 2.0401 -0.7256 1.2213 5 6 1.6148 -0.6164 2.4886 6 6 2.3927 -1.4967 3.2702 7 6 3.2664 -2.1099 2.4426 8 7 3.0586 -1.6416 1.1857 9 6 3.7687 -2.0095 -0.0454 10 6 3.4767 -0.9398 -1.1049 11 7 2.0280 -0.7086 -1.1921 12 6 1.3047 -1.9710 -1.3946 13 6 1.6654 -2.5464 -2.7400 14 8 2.3685 -1.9155 -3.5006 15 7 1.2065 -3.7620 -3.0979 16 6 1.5567 -4.3210 -4.4060 17 6 0.9216 -5.6792 -4.5582 18 1 0.3172 -6.0852 -3.7604 19 6 1.1122 -6.4036 -5.7158 20 7 1.8477 -5.9091 -6.6873 21 14 0.3243 -8.0868 -5.9046 22 1 -1.0216 -7.9378 -6.5142 23 1 1.1729 -8.9350 -6.7796 24 1 0.1955 -8.7255 -4.5703 25 1 -0.3634 -1.0276 0.0129 26 1 -0.3633 0.5251 0.8834 27 1 -0.3633 0.5025 -0.8965 28 1 0.8234 0.0264 2.8449 29 1 2.3055 -1.6518 4.3354 30 1 4.0034 -2.8449 2.7311 31 1 3.4178 -2.9800 -0.3963 32 1 4.8406 -2.0531 0.1473 33 1 3.8487 -1.2770 -2.0724 34 1 3.9759 -0.0112 -0.8283 35 1 0.2314 -1.7852 -1.3548 36 1 1.5804 -2.6774 -0.6117 37 1 0.6438 -4.2664 -2.4898 38 1 2.6399 -4.4154 -4.4826 39 1 1.1931 -3.6602 -5.1929 40 1 1.9815 -6.4186 -7.5019 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000139470780.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:17:30 Heat of formation + Delta-G solvation = 31.452344 kcal Electronic energy + Delta-G solvation = -21835.526669 eV Core-core repulsion = 18651.564954 eV Total energy + Delta-G solvation = -3183.961715 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.87325 -39.15782 -37.19448 -34.21179 -33.95415 -32.36861 -30.80281 -29.20717 -27.96624 -27.44891 -26.31660 -22.94767 -22.84404 -21.50986 -20.50899 -19.80149 -18.42282 -17.40383 -17.07162 -16.28101 -15.93558 -15.34525 -14.86061 -14.69773 -14.37143 -14.10133 -14.01144 -13.66294 -13.47490 -12.84612 -12.67489 -12.45568 -12.23061 -12.15070 -11.97017 -11.86668 -11.66637 -11.60690 -11.17088 -11.03140 -10.99655 -10.83187 -10.34112 -9.43173 -9.10694 -8.76626 -8.65134 -8.38446 -8.07362 -7.90947 -6.19849 -4.26952 2.19526 2.78663 2.97855 3.21964 3.28194 3.30325 3.31694 3.57855 4.18874 4.36536 4.45201 4.67966 4.75747 4.88563 5.03888 5.07890 5.16359 5.19234 5.19683 5.42490 5.51111 5.55751 5.56225 5.65662 5.69719 5.80288 5.96403 6.01820 6.20134 6.27181 6.77014 6.83788 7.03906 7.18354 7.27457 7.32409 7.40090 7.47810 7.63651 7.93597 8.58684 8.75112 9.06715 9.39980 10.90281 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026965 B = 0.003860 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.117320 B = 7251.686497 C = 7488.006488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.150 3.850 3 H 0.101 0.899 4 C -0.018 4.018 5 C -0.186 4.186 6 C -0.209 4.209 7 C -0.009 4.009 8 N -0.444 5.444 9 C 0.063 3.937 10 C 0.041 3.959 11 N -0.506 5.506 12 C 0.022 3.978 13 C 0.498 3.502 14 O -0.539 6.539 15 N -0.714 5.714 16 C 0.252 3.748 17 C -0.544 4.544 18 H 0.062 0.938 19 C 0.064 3.936 20 N -0.885 5.885 21 Si 0.903 3.097 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.273 1.273 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.133 0.867 29 H 0.133 0.867 30 H 0.158 0.842 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.120 0.880 34 H 0.082 0.918 35 H 0.109 0.891 36 H 0.059 0.941 37 H 0.389 0.611 38 H 0.026 0.974 39 H 0.027 0.973 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.311 9.396 17.498 19.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.041 3.959 3 H 0.118 0.882 4 C -0.131 4.131 5 C -0.211 4.211 6 C -0.234 4.234 7 C -0.139 4.139 8 N -0.120 5.120 9 C -0.060 4.060 10 C -0.088 4.088 11 N -0.227 5.227 12 C -0.109 4.109 13 C 0.282 3.718 14 O -0.417 6.417 15 N -0.363 5.363 16 C 0.131 3.869 17 C -0.583 4.583 18 H 0.081 0.919 19 C -0.139 4.139 20 N -0.522 5.522 21 Si 0.730 3.270 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.198 1.198 25 H 0.081 0.919 26 H 0.086 0.914 27 H 0.091 0.909 28 H 0.151 0.849 29 H 0.151 0.849 30 H 0.175 0.825 31 H 0.103 0.897 32 H 0.110 0.890 33 H 0.138 0.862 34 H 0.101 0.899 35 H 0.127 0.873 36 H 0.076 0.924 37 H 0.222 0.778 38 H 0.044 0.956 39 H 0.045 0.955 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.020 9.974 15.978 18.863 hybrid contribution -0.395 -1.898 0.973 2.169 sum 0.625 8.076 16.951 18.787 Atomic orbital electron populations 1.21957 0.92762 1.02797 1.02818 1.20609 0.95848 0.96988 0.82498 0.88163 1.21246 0.95254 0.98875 0.97699 1.20402 1.04020 1.04728 0.91937 1.20924 1.00676 1.02771 0.98983 1.21684 1.04550 1.04416 0.83259 1.44235 1.27953 1.32772 1.07089 1.22743 0.97935 1.01328 0.84027 1.22697 0.88979 0.97724 0.99389 1.62110 1.03212 1.21013 1.36405 1.22270 1.01196 0.91359 0.96082 1.20278 0.81368 0.82044 0.88115 1.90630 1.38017 1.59734 1.53343 1.46475 1.51253 1.17350 1.21240 1.19089 0.96421 0.93061 0.78334 1.21226 1.32708 1.01850 1.02476 0.91949 1.24944 0.95019 0.98539 0.95436 1.69970 1.37809 1.38199 1.06271 0.86422 0.79199 0.83160 0.78189 1.20404 1.20981 1.19771 0.91880 0.91398 0.90887 0.84907 0.84938 0.82461 0.89745 0.88966 0.86227 0.89930 0.87273 0.92351 0.77847 0.95623 0.95483 0.92423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 8.23 37.16 0.31 -1.12 16 2 C 0.15 1.72 3.22 -68.50 -0.22 1.50 16 3 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 4 C -0.02 -0.22 5.60 -81.60 -0.46 -0.68 16 5 C -0.19 -2.18 10.28 -39.95 -0.41 -2.59 16 6 C -0.21 -2.40 10.87 -39.62 -0.43 -2.83 16 7 C -0.01 -0.10 11.55 -16.96 -0.20 -0.30 16 8 N -0.44 -5.46 2.92 -112.13 -0.33 -5.79 16 9 C 0.06 0.74 6.24 -3.68 -0.02 0.72 16 10 C 0.04 0.53 5.50 -3.60 -0.02 0.51 16 11 N -0.51 -7.00 4.57 -228.68 -1.05 -8.05 16 12 C 0.02 0.32 4.34 -4.97 -0.02 0.30 16 13 C 0.50 9.58 7.50 -10.99 -0.08 9.50 16 14 O -0.54 -12.35 14.55 5.56 0.08 -12.27 16 15 N -0.71 -14.66 5.55 -61.47 -0.34 -15.00 16 16 C 0.25 6.55 5.43 -5.19 -0.03 6.52 16 17 C -0.54 -14.59 9.28 -34.44 -0.32 -14.91 16 18 H 0.06 1.57 7.60 -52.48 -0.40 1.17 16 19 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 20 N -0.89 -25.82 13.29 55.43 0.74 -25.08 16 21 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 25 H 0.06 0.65 6.16 -51.93 -0.32 0.33 16 26 H 0.07 0.55 7.82 -51.93 -0.41 0.15 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.13 1.32 7.89 -52.48 -0.41 0.91 16 29 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 30 H 0.16 1.44 8.06 -52.48 -0.42 1.02 16 31 H 0.08 1.08 6.84 -51.93 -0.36 0.73 16 32 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.12 1.86 6.21 -51.93 -0.32 1.53 16 34 H 0.08 0.98 8.07 -51.93 -0.42 0.56 16 35 H 0.11 1.43 5.60 -51.93 -0.29 1.14 16 36 H 0.06 0.82 5.68 -51.93 -0.29 0.53 16 37 H 0.39 6.94 8.32 -40.82 -0.34 6.60 16 38 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 320.54 15.07 4.83 4.83 Total: -1.00 -31.75 320.54 -8.74 -40.50 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -5.65 Total: 6.93 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: -2.00 Total: -1.71 kcal Atomic # 7 Polarization: -52.94 SS G_CDS: -0.98 Total: -53.92 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: 0.08 Total: -12.27 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.75 -8.74 -40.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139470780.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.948 kcal (2) G-P(sol) polarization free energy of solvation -31.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds