Wall clock time and date at job start Mon Mar 30 2020 20:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.46828 * 2 1 4 4 N 1.46499 * 109.47670 * 239.99731 * 2 1 3 5 5 C 1.34778 * 119.99821 * 84.99511 * 4 2 1 6 6 O 1.21587 * 120.00132 * 0.02562 * 5 4 2 7 7 N 1.34779 * 119.99720 * 180.02562 * 5 4 2 8 8 C 1.46503 * 119.99742 * 179.97438 * 7 5 4 9 9 C 1.52996 * 109.46782 * 179.97438 * 8 7 5 10 10 C 1.52999 * 109.46959 * 180.02562 * 9 8 7 11 11 C 1.50709 * 109.47243 * 180.02562 * 10 9 8 12 12 H 1.08002 * 119.99732 * 0.02562 * 11 10 9 13 13 C 1.37873 * 119.99905 * 179.97438 * 11 10 9 14 14 N 1.31513 * 120.00324 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99829 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47077 * 59.99779 * 15 13 11 17 17 H 1.48496 * 109.47167 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47189 * 300.00005 * 15 13 11 19 19 C 1.50703 * 109.47330 * 119.99391 * 2 1 3 20 20 C 1.38230 * 119.61556 * 274.72874 * 19 2 1 21 21 C 1.38628 * 119.15851 * 180.30022 * 20 19 2 22 22 C 1.38678 * 118.42181 * 359.97438 * 21 20 19 23 23 C 1.38183 * 119.15888 * 359.97438 * 22 21 20 24 24 N 1.31854 * 119.61803 * 95.00556 * 19 2 1 25 25 H 1.09005 * 109.46705 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47008 * 300.00212 * 1 2 3 27 27 H 1.08998 * 109.47429 * 60.00868 * 1 2 3 28 28 H 0.97002 * 119.99878 * 265.00413 * 4 2 1 29 29 H 0.97002 * 120.00257 * 359.97438 * 7 5 4 30 30 H 1.08991 * 109.47057 * 299.99928 * 8 7 5 31 31 H 1.09002 * 109.46909 * 60.00526 * 8 7 5 32 32 H 1.09001 * 109.47359 * 300.00457 * 9 8 7 33 33 H 1.09000 * 109.47383 * 60.00277 * 9 8 7 34 34 H 1.08996 * 109.47030 * 299.99761 * 10 9 8 35 35 H 1.08999 * 109.47625 * 60.00584 * 10 9 8 36 36 H 0.97005 * 120.00118 * 179.97438 * 14 13 11 37 37 H 1.07992 * 120.42429 * 0.25914 * 20 19 2 38 38 H 1.08001 * 120.79095 * 179.97438 * 21 20 19 39 39 H 1.08002 * 120.42216 * 179.97438 * 22 21 20 40 40 H 1.08001 * 119.61474 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0185 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8583 1.1615 -2.4117 7 7 2.5960 -0.6538 -3.4576 8 6 2.7354 0.0768 -4.7198 9 6 3.2600 -0.8694 -5.8015 10 6 3.4061 -0.1062 -7.1195 11 6 3.9224 -1.0384 -8.1852 12 1 4.1254 -2.0720 -7.9464 13 6 4.1343 -0.5721 -9.4653 14 7 3.8856 0.6861 -9.7564 15 14 4.7735 -1.7277 -10.7864 16 1 3.8178 -2.8499 -10.9670 17 1 4.9143 -0.9873 -12.0659 18 1 6.0959 -2.2649 -10.3767 19 6 2.0324 -0.7103 1.2305 20 6 2.1667 -0.0115 2.4156 21 6 2.6356 -0.6727 3.5402 22 6 2.9529 -2.0183 3.4304 23 6 2.7916 -2.6508 2.2125 24 7 2.3439 -1.9897 1.1629 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 2.2491 -1.6318 -1.1525 29 1 2.8268 -1.5950 -3.4140 30 1 1.7646 0.4706 -5.0206 31 1 3.4366 0.9008 -4.5871 32 1 4.2308 -1.2630 -5.5003 33 1 2.5592 -1.6937 -5.9343 34 1 2.4355 0.2875 -7.4208 35 1 4.1072 0.7177 -6.9865 36 1 4.0351 1.0142 -10.6569 37 1 1.9102 1.0364 2.4647 38 1 2.7512 -0.1524 4.4795 39 1 3.3213 -2.5649 4.2860 40 1 3.0361 -3.6986 2.1188 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171731887.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:17:43 Heat of formation + Delta-G solvation = -11.786040 kcal Electronic energy + Delta-G solvation = -20219.430330 eV Core-core repulsion = 17033.593659 eV Total energy + Delta-G solvation = -3185.836672 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.79954 -39.58060 -36.11574 -34.97454 -33.28826 -32.80014 -32.09358 -30.89327 -29.51425 -26.55254 -24.72923 -23.95788 -23.06204 -21.55235 -20.65081 -20.17621 -18.35013 -17.18204 -16.81130 -16.33761 -15.91373 -15.45582 -15.33787 -14.71441 -14.50609 -14.29263 -14.05263 -13.89576 -13.62877 -13.36136 -12.92123 -12.48800 -12.23701 -12.11261 -11.75569 -11.64818 -11.38901 -10.85254 -10.66540 -10.58674 -10.28827 -10.02951 -9.88989 -9.80232 -9.45885 -9.38592 -9.09499 -9.07572 -8.51539 -8.33392 -5.98190 -4.01143 0.68551 0.87730 2.87601 3.34581 3.37377 3.39107 3.41267 3.47562 3.79644 4.30563 4.44788 4.46938 4.53863 4.68539 4.78055 5.00483 5.09505 5.17341 5.30574 5.37369 5.47451 5.64413 5.72866 5.76443 5.82414 5.88302 6.03046 6.25229 6.28266 6.54871 6.61513 6.68912 6.89932 7.08462 7.21890 7.58363 7.67903 7.81521 8.01003 8.27733 8.42123 8.85151 9.05395 9.62687 11.13080 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036924 B = 0.002503 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.129788 B =11184.964705 C =11672.850693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.214 3.786 3 H 0.104 0.896 4 N -0.739 5.739 5 C 0.701 3.299 6 O -0.597 6.597 7 N -0.741 5.741 8 C 0.136 3.864 9 C -0.120 4.120 10 C 0.024 3.976 11 C -0.522 4.522 12 H 0.055 0.945 13 C 0.056 3.944 14 N -0.894 5.894 15 Si 0.893 3.107 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 C 0.126 3.874 20 C -0.163 4.163 21 C -0.071 4.071 22 C -0.178 4.178 23 C 0.105 3.895 24 N -0.481 5.481 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.405 0.595 29 H 0.394 0.606 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.019 0.981 35 H 0.019 0.981 36 H 0.261 0.739 37 H 0.138 0.862 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.068 -5.265 28.740 29.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.107 3.893 3 H 0.122 0.878 4 N -0.397 5.397 5 C 0.401 3.599 6 O -0.476 6.476 7 N -0.395 5.395 8 C 0.012 3.988 9 C -0.158 4.158 10 C -0.014 4.014 11 C -0.560 4.560 12 H 0.073 0.927 13 C -0.145 4.145 14 N -0.533 5.533 15 Si 0.721 3.279 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.203 1.203 19 C -0.012 4.012 20 C -0.183 4.183 21 C -0.097 4.097 22 C -0.198 4.198 23 C -0.052 4.052 24 N -0.190 5.190 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.092 0.908 28 H 0.241 0.759 29 H 0.227 0.773 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.038 0.962 35 H 0.037 0.963 36 H 0.071 0.929 37 H 0.156 0.844 38 H 0.154 0.846 39 H 0.153 0.847 40 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -4.419 -4.464 27.706 28.409 hybrid contribution 0.723 -1.102 0.181 1.330 sum -3.697 -5.566 27.887 28.676 Atomic orbital electron populations 1.22182 0.93881 1.02613 1.03023 1.19532 0.94182 0.95803 0.79763 0.87841 1.45032 1.72119 1.14351 1.08160 1.16007 0.78457 0.85105 0.80349 1.90901 1.57527 1.14400 1.84726 1.45369 1.70532 1.13902 1.09719 1.21494 1.01212 0.95197 0.80848 1.21888 0.99663 0.98222 0.96077 1.19025 0.97487 0.95470 0.89374 1.21178 1.43973 0.96344 0.94538 0.92715 1.25029 0.95674 0.95109 0.98678 1.69958 1.48741 1.14185 1.20430 0.86642 0.79410 0.80846 0.80983 1.20263 1.21298 1.20268 1.21387 0.94700 0.90328 0.94770 1.21889 1.01409 1.01725 0.93281 1.21594 0.94952 0.94499 0.98663 1.22166 1.02254 0.95778 0.99599 1.22767 0.94235 1.00103 0.88128 1.67281 1.11096 1.08468 1.32154 0.92198 0.91691 0.90772 0.75934 0.77272 0.91973 0.92025 0.92799 0.92765 0.96244 0.96257 0.92897 0.84381 0.84626 0.84722 0.82520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 9.47 37.16 0.35 -1.23 16 2 C 0.21 2.36 2.82 -69.08 -0.20 2.16 16 3 H 0.10 1.23 7.54 -51.93 -0.39 0.84 16 4 N -0.74 -9.30 5.05 -59.81 -0.30 -9.60 16 5 C 0.70 11.35 8.53 -86.91 -0.74 10.61 16 6 O -0.60 -11.86 16.01 5.29 0.08 -11.78 16 7 N -0.74 -11.51 5.56 -65.23 -0.36 -11.87 16 8 C 0.14 2.51 5.67 -4.04 -0.02 2.49 16 9 C -0.12 -2.43 5.27 -26.73 -0.14 -2.57 16 10 C 0.02 0.62 4.97 -27.88 -0.14 0.49 16 11 C -0.52 -14.79 9.11 -34.44 -0.31 -15.10 16 12 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 14 N -0.89 -27.13 13.29 55.43 0.74 -26.40 16 15 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 C 0.13 1.22 5.89 -82.58 -0.49 0.73 16 20 C -0.16 -1.23 9.76 -39.44 -0.39 -1.62 16 21 C -0.07 -0.44 10.18 -39.27 -0.40 -0.84 16 22 C -0.18 -1.07 10.11 -39.44 -0.40 -1.47 16 23 C 0.10 0.78 11.18 -17.55 -0.20 0.58 16 24 N -0.48 -4.70 9.04 -9.47 -0.09 -4.79 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.40 4.55 7.64 -40.82 -0.31 4.24 16 29 H 0.39 5.06 8.49 -40.82 -0.35 4.71 16 30 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 37 H 0.14 0.79 8.06 -52.49 -0.42 0.36 16 38 H 0.14 0.48 8.06 -52.49 -0.42 0.06 16 39 H 0.13 0.46 8.06 -52.49 -0.42 0.04 16 40 H 0.16 0.78 8.06 -52.49 -0.42 0.36 16 LS Contribution 343.46 15.07 5.18 5.18 Total: -1.00 -34.05 343.46 -9.03 -43.08 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -6.09 Total: 3.69 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: -3.16 Total: -4.22 kcal Atomic # 7 Polarization: -52.64 SS G_CDS: -0.01 Total: -52.65 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.08 Total: -11.78 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.05 -9.03 -43.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171731887.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.294 kcal (2) G-P(sol) polarization free energy of solvation -34.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds