Wall clock time and date at job start Mon Mar 30 2020 20:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46901 * 2 1 4 4 N 1.46496 * 109.47234 * 119.99509 * 2 1 3 5 5 C 1.34777 * 120.00258 * 275.00436 * 4 2 1 6 6 O 1.21579 * 119.99978 * 359.97438 * 5 4 2 7 7 N 1.34784 * 119.99908 * 179.97438 * 5 4 2 8 8 C 1.46494 * 119.99635 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.47001 * 180.02562 * 8 7 5 10 10 C 1.52997 * 109.47535 * 180.02562 * 9 8 7 11 11 C 1.50697 * 109.47471 * 179.97438 * 10 9 8 12 12 H 1.08002 * 119.99869 * 359.97438 * 11 10 9 13 13 C 1.37876 * 119.99922 * 179.97438 * 11 10 9 14 14 N 1.31512 * 120.00388 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99824 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47195 * 89.99983 * 15 13 11 17 17 H 1.48499 * 109.47159 * 209.99893 * 15 13 11 18 18 H 1.48498 * 109.47267 * 329.99963 * 15 13 11 19 19 C 1.50694 * 109.47384 * 239.99869 * 2 1 3 20 20 C 1.38235 * 119.62067 * 84.99719 * 19 2 1 21 21 C 1.38620 * 119.16161 * 179.97438 * 20 19 2 22 22 C 1.38670 * 118.42113 * 359.97438 * 21 20 19 23 23 C 1.38180 * 119.16439 * 359.97438 * 22 21 20 24 24 N 1.31854 * 119.61874 * 264.73183 * 19 2 1 25 25 H 1.09002 * 109.47121 * 60.00104 * 1 2 3 26 26 H 1.08994 * 109.47090 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47093 * 300.00316 * 1 2 3 28 28 H 0.96999 * 119.99694 * 94.99826 * 4 2 1 29 29 H 0.96995 * 120.00015 * 359.72369 * 7 5 4 30 30 H 1.09005 * 109.47306 * 299.99972 * 8 7 5 31 31 H 1.09002 * 109.47518 * 60.00210 * 8 7 5 32 32 H 1.09005 * 109.46767 * 299.99934 * 9 8 7 33 33 H 1.08996 * 109.47766 * 59.99412 * 9 8 7 34 34 H 1.09005 * 109.46889 * 299.99675 * 10 9 8 35 35 H 1.09004 * 109.47073 * 59.99170 * 10 9 8 36 36 H 0.96998 * 120.00131 * 180.02562 * 14 13 11 37 37 H 1.07998 * 120.41592 * 0.02562 * 20 19 2 38 38 H 1.08004 * 120.79004 * 180.02562 * 21 20 19 39 39 H 1.08007 * 120.41702 * 180.02562 * 22 21 20 40 40 H 1.08000 * 119.61633 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1470 -0.0181 2.3571 6 8 1.8582 1.1616 2.4116 7 7 2.5958 -0.6536 3.4578 8 6 2.7362 0.0775 4.7195 9 6 3.2605 -0.8688 5.8015 10 6 3.4065 -0.1055 7.1195 11 6 3.9224 -1.0377 8.1853 12 1 4.1253 -2.0712 7.9467 13 6 4.1352 -0.5710 9.4651 14 7 3.8876 0.6875 9.7559 15 14 4.7739 -1.7266 10.7865 16 1 6.2586 -1.6962 10.7951 17 1 4.2623 -1.2942 12.1118 18 1 4.3087 -3.1080 10.5030 19 6 2.0324 -0.7104 -1.2304 20 6 2.1613 -0.0132 -2.4171 21 6 2.6249 -0.6760 -3.5429 22 6 2.9433 -2.0211 -3.4326 23 6 2.7897 -2.6516 -2.2126 24 7 2.3488 -1.9885 -1.1613 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 2.2490 -1.6316 1.1527 29 1 2.8224 -1.5957 3.4153 30 1 3.4379 0.9009 4.5863 31 1 1.7658 0.4722 5.0207 32 1 2.5591 -1.6924 5.9348 33 1 4.2309 -1.2632 5.5002 34 1 4.1078 0.7183 6.9864 35 1 2.4359 0.2886 7.4206 36 1 4.0377 1.0159 10.6562 37 1 1.9050 1.0347 -2.4662 38 1 2.7361 -0.1568 -4.4834 39 1 3.3077 -2.5688 -4.2892 40 1 3.0351 -3.6991 -2.1186 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171731890.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:17:47 Heat of formation + Delta-G solvation = -11.813140 kcal Electronic energy + Delta-G solvation = -20219.487537 eV Core-core repulsion = 17033.649690 eV Total energy + Delta-G solvation = -3185.837847 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.80031 -39.58167 -36.11661 -34.97562 -33.28957 -32.80068 -32.09393 -30.89370 -29.51469 -26.55381 -24.73017 -23.95769 -23.06294 -21.55235 -20.65094 -20.17660 -18.35070 -17.18210 -16.81108 -16.34025 -15.91447 -15.45816 -15.33778 -14.71499 -14.50400 -14.29195 -14.05161 -13.89553 -13.62944 -13.35995 -12.92348 -12.48770 -12.24617 -12.11406 -11.75204 -11.64899 -11.38975 -10.87407 -10.66826 -10.55853 -10.28843 -10.03008 -9.88957 -9.80572 -9.45852 -9.38844 -9.08489 -9.07591 -8.51497 -8.33778 -5.98475 -4.01307 0.68567 0.87752 2.87609 3.33165 3.37428 3.39376 3.42445 3.47501 3.79653 4.30580 4.44768 4.46864 4.53877 4.68553 4.78084 5.00443 5.09463 5.17329 5.30569 5.37219 5.47402 5.64325 5.72821 5.76451 5.82372 5.88279 6.02977 6.25221 6.28267 6.54912 6.61523 6.68876 6.89983 7.08471 7.21941 7.58372 7.68037 7.81388 8.00888 8.27777 8.42069 8.85185 9.05482 9.62594 11.12854 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036974 B = 0.002502 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.097161 B =11187.023962 C =11675.347584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.214 3.786 3 H 0.104 0.896 4 N -0.739 5.739 5 C 0.701 3.299 6 O -0.597 6.597 7 N -0.741 5.741 8 C 0.136 3.864 9 C -0.120 4.120 10 C 0.024 3.976 11 C -0.521 4.521 12 H 0.055 0.945 13 C 0.056 3.944 14 N -0.894 5.894 15 Si 0.893 3.107 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.274 1.274 19 C 0.127 3.873 20 C -0.163 4.163 21 C -0.071 4.071 22 C -0.178 4.178 23 C 0.105 3.895 24 N -0.481 5.481 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.073 0.927 28 H 0.405 0.595 29 H 0.394 0.606 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.019 0.981 35 H 0.019 0.981 36 H 0.261 0.739 37 H 0.138 0.862 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.107 -5.286 -28.757 29.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.107 3.893 3 H 0.122 0.878 4 N -0.397 5.397 5 C 0.401 3.599 6 O -0.476 6.476 7 N -0.395 5.395 8 C 0.012 3.988 9 C -0.158 4.158 10 C -0.014 4.014 11 C -0.559 4.559 12 H 0.073 0.927 13 C -0.145 4.145 14 N -0.533 5.533 15 Si 0.721 3.279 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.012 4.012 20 C -0.183 4.183 21 C -0.097 4.097 22 C -0.198 4.198 23 C -0.052 4.052 24 N -0.190 5.190 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.092 0.908 28 H 0.241 0.759 29 H 0.227 0.773 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.037 0.963 35 H 0.038 0.962 36 H 0.070 0.930 37 H 0.156 0.844 38 H 0.154 0.846 39 H 0.153 0.847 40 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -4.451 -4.488 -27.724 28.435 hybrid contribution 0.723 -1.089 -0.176 1.319 sum -3.728 -5.577 -27.900 28.695 Atomic orbital electron populations 1.22181 0.93876 1.02612 1.03029 1.19529 0.94176 0.95813 0.79765 0.87842 1.45030 1.72120 1.14356 1.08156 1.16006 0.78444 0.85109 0.80357 1.90899 1.57506 1.14413 1.84733 1.45366 1.70621 1.13797 1.09739 1.21495 1.01204 0.95194 0.80862 1.21888 0.99670 0.98221 0.96067 1.19030 0.97496 0.95476 0.89387 1.21212 1.43837 0.96366 0.94533 0.92662 1.25032 0.95683 0.95114 0.98692 1.69966 1.48777 1.14179 1.20387 0.86583 0.79048 0.81093 0.81187 1.20687 1.21230 1.19912 1.21386 0.94674 0.90357 0.94764 1.21888 1.01447 1.01721 0.93251 1.21590 0.94953 0.94491 0.98673 1.22164 1.02246 0.95794 0.99595 1.22767 0.94281 1.00084 0.88098 1.67280 1.11079 1.08429 1.32216 0.91682 0.92201 0.90773 0.75930 0.77272 0.92018 0.91985 0.92770 0.92793 0.96260 0.96235 0.92956 0.84382 0.84626 0.84723 0.82519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 9.47 37.16 0.35 -1.23 16 2 C 0.21 2.36 2.82 -69.09 -0.20 2.16 16 3 H 0.10 1.23 7.55 -51.93 -0.39 0.84 16 4 N -0.74 -9.30 5.05 -59.82 -0.30 -9.60 16 5 C 0.70 11.35 8.53 -86.91 -0.74 10.61 16 6 O -0.60 -11.86 16.00 5.30 0.08 -11.77 16 7 N -0.74 -11.51 5.56 -65.23 -0.36 -11.87 16 8 C 0.14 2.51 5.67 -4.04 -0.02 2.49 16 9 C -0.12 -2.43 5.27 -26.73 -0.14 -2.57 16 10 C 0.02 0.62 4.97 -27.89 -0.14 0.48 16 11 C -0.52 -14.76 9.11 -34.44 -0.31 -15.07 16 12 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 14 N -0.89 -27.13 13.29 55.43 0.74 -26.39 16 15 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 19 C 0.13 1.22 5.89 -82.59 -0.49 0.73 16 20 C -0.16 -1.23 9.77 -39.44 -0.39 -1.62 16 21 C -0.07 -0.44 10.18 -39.28 -0.40 -0.84 16 22 C -0.18 -1.07 10.11 -39.44 -0.40 -1.47 16 23 C 0.10 0.78 11.18 -17.55 -0.20 0.58 16 24 N -0.48 -4.70 9.03 -9.48 -0.09 -4.79 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.40 4.55 7.64 -40.82 -0.31 4.24 16 29 H 0.39 5.06 8.49 -40.82 -0.35 4.71 16 30 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.14 0.79 8.06 -52.49 -0.42 0.36 16 38 H 0.14 0.48 8.06 -52.48 -0.42 0.06 16 39 H 0.13 0.46 8.06 -52.48 -0.42 0.04 16 40 H 0.16 0.78 8.06 -52.49 -0.42 0.36 16 LS Contribution 343.45 15.07 5.18 5.18 Total: -1.00 -34.08 343.45 -9.03 -43.11 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -6.09 Total: 3.65 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: -3.16 Total: -4.21 kcal Atomic # 7 Polarization: -52.64 SS G_CDS: -0.01 Total: -52.65 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.08 Total: -11.77 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.08 -9.03 -43.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171731890.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.294 kcal (2) G-P(sol) polarization free energy of solvation -34.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds