Wall clock time and date at job start Mon Mar 30 2020 20:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46760 * 2 1 4 4 C 1.50694 * 109.47029 * 119.99820 * 2 1 3 5 5 C 1.38244 * 119.97757 * 73.45255 * 4 2 1 6 6 C 1.38202 * 120.02781 * 179.72567 * 5 4 2 7 7 C 1.38458 * 119.97261 * 0.56698 * 6 5 4 8 8 F 1.35097 * 120.02378 * 179.68492 * 7 6 5 9 9 C 1.38461 * 119.94999 * 359.70358 * 7 6 5 10 10 C 1.38201 * 119.97102 * 0.02562 * 9 7 6 11 11 N 1.46902 * 109.46838 * 239.99790 * 2 1 3 12 12 C 1.46841 * 110.99318 * 53.08940 * 11 2 1 13 13 C 1.53039 * 109.51579 * 185.84879 * 12 11 2 14 14 C 1.53116 * 109.27417 * 300.81130 * 13 12 11 15 15 C 1.53119 * 109.16151 * 57.65715 * 14 13 12 16 16 H 1.08997 * 109.50610 * 62.27994 * 15 14 13 17 17 C 1.50699 * 109.53786 * 182.38395 * 15 14 13 18 18 H 1.08004 * 120.00281 * 119.81774 * 17 15 14 19 19 C 1.37874 * 119.99977 * 299.82200 * 17 15 14 20 20 N 1.31518 * 120.00193 * 359.97438 * 19 17 15 21 21 Si 1.86802 * 120.00360 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46776 * 59.99806 * 21 19 17 23 23 H 1.48496 * 109.47178 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.46951 * 300.00178 * 21 19 17 25 25 C 1.46846 * 110.99474 * 177.28746 * 11 2 1 26 26 H 1.09000 * 109.47518 * 300.00195 * 1 2 3 27 27 H 1.08999 * 109.47360 * 60.00293 * 1 2 3 28 28 H 1.09002 * 109.47181 * 180.02562 * 1 2 3 29 29 H 1.08004 * 119.98571 * 359.96918 * 5 4 2 30 30 H 1.08001 * 120.00919 * 180.24652 * 6 5 4 31 31 H 1.07997 * 120.01844 * 180.02562 * 9 7 6 32 32 H 1.08007 * 119.98491 * 180.02562 * 10 9 7 33 33 H 1.08995 * 109.47683 * 65.82905 * 12 11 2 34 34 H 1.09008 * 109.46392 * 305.85991 * 12 11 2 35 35 H 1.09003 * 109.50364 * 180.87246 * 13 12 11 36 36 H 1.08995 * 109.50353 * 60.75051 * 13 12 11 37 37 H 1.09000 * 109.52621 * 297.75113 * 14 13 12 38 38 H 1.09004 * 109.52456 * 177.55999 * 14 13 12 39 39 H 0.97001 * 120.00736 * 179.97438 * 20 19 17 40 40 H 1.09003 * 109.46209 * 54.14572 * 25 11 2 41 41 H 1.08991 * 109.46653 * 294.16876 * 25 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2304 5 6 1.9410 -2.0869 1.3190 6 6 2.4065 -2.7399 2.4445 7 6 2.9537 -2.0139 3.4888 8 9 3.4033 -2.6507 4.5922 9 6 3.0396 -0.6347 3.4014 10 6 2.5785 0.0156 2.2725 11 7 2.0196 -0.6926 -1.1994 12 6 1.4187 -0.1285 -2.4147 13 6 1.8362 -0.9643 -3.6269 14 6 3.3631 -0.9610 -3.7412 15 6 3.9654 -1.5078 -2.4440 16 1 3.6455 -2.5398 -2.3009 17 6 5.4693 -1.4538 -2.5247 18 1 6.0280 -0.8704 -1.8077 19 6 6.1320 -2.1490 -3.5138 20 7 5.4518 -2.8597 -4.3867 21 14 7.9961 -2.0816 -3.6144 22 1 8.5790 -2.6077 -2.3539 23 1 8.4604 -2.9086 -4.7570 24 1 8.4306 -0.6754 -3.8116 25 6 3.4861 -0.6562 -1.2662 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.5092 -2.6526 0.5065 30 1 2.3386 -3.8157 2.5117 31 1 3.4667 -0.0674 4.2151 32 1 2.6458 1.0914 2.2039 33 1 1.7604 0.8981 -2.5463 34 1 0.3326 -0.1404 -2.3221 35 1 1.4026 -0.5363 -4.5308 36 1 1.4828 -1.9878 -3.5023 37 1 3.7140 0.0579 -3.9047 38 1 3.6671 -1.5905 -4.5776 39 1 5.9179 -3.3486 -5.0829 40 1 3.9017 -1.0515 -0.3393 41 1 3.8180 0.3729 -1.4032 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259819554.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:18:13 Heat of formation + Delta-G solvation = -28.226720 kcal Electronic energy + Delta-G solvation = -21906.605617 eV Core-core repulsion = 18700.136063 eV Total energy + Delta-G solvation = -3206.469555 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.77279 -39.61845 -37.81486 -34.54802 -32.45222 -31.00171 -30.18524 -30.01230 -28.39207 -24.96927 -23.88975 -22.98663 -22.39553 -21.17506 -19.94660 -18.61822 -17.53528 -16.57023 -16.19770 -15.61372 -15.46137 -15.11064 -14.60071 -14.21494 -14.00743 -13.59679 -13.34787 -12.96240 -12.86406 -12.69725 -12.52878 -12.47856 -12.20922 -11.75241 -11.42073 -11.32205 -10.96685 -10.91961 -10.81118 -10.66456 -10.53557 -10.04376 -9.81672 -9.45742 -9.02162 -8.94626 -8.70680 -8.38213 -8.27635 -7.70020 -5.96047 -4.01884 1.27395 1.39538 3.33157 3.37732 3.40518 3.71524 4.34119 4.39065 4.50506 4.82578 4.90428 5.00076 5.33694 5.35691 5.36737 5.47347 5.56514 5.62994 5.77740 5.81213 5.92332 6.05648 6.09808 6.17035 6.19906 6.25115 6.34969 6.39599 6.44843 6.54140 6.70608 6.71963 6.77998 6.98335 7.04343 7.22469 7.40803 7.65968 7.76141 7.81809 8.09931 8.18692 8.49974 9.01862 9.62321 11.09922 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014872 B = 0.005808 C = 0.004527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.223518 B = 4820.038335 C = 6183.174625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.117 3.883 3 H 0.042 0.958 4 C -0.076 4.076 5 C -0.055 4.055 6 C -0.156 4.156 7 C 0.088 3.912 8 F -0.146 7.146 9 C -0.158 4.158 10 C -0.091 4.091 11 N -0.530 5.530 12 C 0.059 3.941 13 C -0.117 4.117 14 C -0.111 4.111 15 C 0.057 3.943 16 H 0.033 0.967 17 C -0.514 4.514 18 H 0.052 0.948 19 C 0.064 3.936 20 N -0.889 5.889 21 Si 0.888 3.112 22 H -0.278 1.278 23 H -0.287 1.287 24 H -0.278 1.278 25 C 0.069 3.931 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.141 0.859 30 H 0.132 0.868 31 H 0.130 0.870 32 H 0.127 0.873 33 H 0.022 0.978 34 H 0.065 0.935 35 H 0.046 0.954 36 H 0.060 0.940 37 H 0.029 0.971 38 H 0.090 0.910 39 H 0.260 0.740 40 H 0.060 0.940 41 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.041 4.875 10.335 15.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.009 3.991 3 H 0.060 0.940 4 C -0.077 4.077 5 C -0.073 4.073 6 C -0.174 4.174 7 C 0.069 3.931 8 F -0.125 7.125 9 C -0.177 4.177 10 C -0.109 4.109 11 N -0.255 5.255 12 C -0.069 4.069 13 C -0.154 4.154 14 C -0.149 4.149 15 C 0.038 3.962 16 H 0.052 0.948 17 C -0.553 4.553 18 H 0.070 0.930 19 C -0.137 4.137 20 N -0.528 5.528 21 Si 0.716 3.284 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.204 1.204 25 C -0.058 4.058 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.159 0.841 30 H 0.150 0.850 31 H 0.148 0.852 32 H 0.145 0.855 33 H 0.040 0.960 34 H 0.083 0.917 35 H 0.064 0.936 36 H 0.079 0.921 37 H 0.048 0.952 38 H 0.108 0.892 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -10.141 4.247 10.240 15.024 hybrid contribution 1.555 0.796 0.063 1.748 sum -8.586 5.044 10.303 14.328 Atomic orbital electron populations 1.21928 0.93962 1.02730 1.01417 1.20493 0.95072 0.94712 0.88851 0.93976 1.19854 0.98590 0.94124 0.95119 1.20956 0.96315 0.93933 0.96138 1.21188 1.01777 1.00708 0.93761 1.17729 1.00201 0.90811 0.84331 1.91467 1.87226 1.82355 1.51448 1.20996 1.03976 0.92596 1.00094 1.20869 0.97527 0.99931 0.92590 1.62091 1.09186 1.53888 1.00368 1.22124 0.98078 0.96011 0.90655 1.21671 0.99618 0.99461 0.94693 1.21660 0.90403 0.99790 1.03084 1.18635 0.94102 0.94753 0.88674 0.94843 1.21109 0.91492 1.29439 1.13257 0.93017 1.24912 0.97938 0.95183 0.95690 1.69877 1.35030 1.31110 1.16745 0.86718 0.86158 0.77949 0.77527 1.20318 1.21295 1.20401 1.22311 0.83717 0.98568 1.01218 0.92615 0.92001 0.91606 0.84107 0.84962 0.85217 0.85532 0.95959 0.91719 0.93574 0.92098 0.95244 0.89177 0.93031 0.92137 0.96499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 8.66 37.16 0.32 -1.34 16 2 C 0.12 1.67 2.28 -68.87 -0.16 1.51 16 3 H 0.04 0.60 7.94 -51.93 -0.41 0.19 16 4 C -0.08 -1.08 3.55 -104.62 -0.37 -1.45 16 5 C -0.06 -0.80 8.96 -39.59 -0.35 -1.15 16 6 C -0.16 -2.15 10.03 -39.51 -0.40 -2.55 16 7 C 0.09 1.24 7.30 -39.42 -0.29 0.95 16 8 F -0.15 -2.09 17.27 2.25 0.04 -2.05 16 9 C -0.16 -2.02 10.03 -39.51 -0.40 -2.41 16 10 C -0.09 -1.16 9.66 -39.59 -0.38 -1.55 16 11 N -0.53 -9.17 4.03 -228.08 -0.92 -10.09 16 12 C 0.06 0.98 5.07 -3.84 -0.02 0.96 16 13 C -0.12 -2.20 6.09 -26.65 -0.16 -2.36 16 14 C -0.11 -2.59 5.03 -26.61 -0.13 -2.73 16 15 C 0.06 1.41 2.26 -91.69 -0.21 1.20 16 16 H 0.03 0.92 8.14 -51.93 -0.42 0.49 16 17 C -0.51 -14.11 8.56 -34.44 -0.29 -14.41 16 18 H 0.05 1.41 7.74 -52.48 -0.41 1.01 16 19 C 0.06 1.77 5.31 -17.82 -0.09 1.68 16 20 N -0.89 -25.30 11.36 55.43 0.63 -24.67 16 21 Si 0.89 21.40 29.54 -169.99 -5.02 16.37 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 C 0.07 1.43 4.49 -3.83 -0.02 1.42 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.68 6.19 -51.93 -0.32 0.36 16 28 H 0.06 0.78 8.06 -51.93 -0.42 0.36 16 29 H 0.14 2.06 7.92 -52.48 -0.42 1.64 16 30 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 31 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 32 H 0.13 1.37 7.99 -52.48 -0.42 0.95 16 33 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.92 5.85 -51.92 -0.30 0.61 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.09 2.36 6.17 -51.93 -0.32 2.04 16 39 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 40 H 0.06 1.30 6.82 -51.93 -0.35 0.95 16 41 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 326.90 15.07 4.93 4.93 Total: -1.00 -28.15 326.90 -9.61 -37.76 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -6.31 Total: -0.03 kcal Atomic # 6 Polarization: -19.27 SS G_CDS: -2.95 Total: -22.22 kcal Atomic # 7 Polarization: -34.47 SS G_CDS: -0.29 Total: -34.75 kcal Atomic # 9 Polarization: -2.09 SS G_CDS: 0.04 Total: -2.05 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -28.15 -9.61 -37.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259819554.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.533 kcal (2) G-P(sol) polarization free energy of solvation -28.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds