Wall clock time and date at job start Mon Mar 30 2020 20:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47499 * 2 1 4 4 C 1.50695 * 109.47472 * 239.99126 * 2 1 3 5 5 C 1.38651 * 120.78832 * 108.58623 * 4 2 1 6 6 C 1.38206 * 119.16102 * 179.75504 * 5 4 2 7 7 N 1.31869 * 120.76369 * 0.53587 * 6 5 4 8 8 C 1.31868 * 121.72517 * 359.74207 * 7 6 5 9 9 C 1.38206 * 120.76418 * 359.97405 * 8 7 6 10 10 N 1.46502 * 109.46661 * 119.99200 * 2 1 3 11 11 C 1.46505 * 120.00116 * 53.90857 * 10 2 1 12 12 C 1.34783 * 120.00131 * 233.90430 * 10 2 1 13 13 O 1.21582 * 119.99532 * 0.02562 * 12 10 2 14 14 N 1.34773 * 119.99765 * 180.02562 * 12 10 2 15 15 C 1.46503 * 119.99825 * 180.02562 * 14 12 10 16 16 C 1.53001 * 109.47245 * 179.97438 * 15 14 12 17 17 C 1.50705 * 109.47124 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99510 * 359.97438 * 17 16 15 19 19 C 1.37868 * 119.99994 * 180.02562 * 17 16 15 20 20 N 1.31515 * 119.99979 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00047 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47187 * 89.99589 * 21 19 17 23 23 H 1.48504 * 109.46921 * 209.99754 * 21 19 17 24 24 H 1.48500 * 109.46912 * 329.99096 * 21 19 17 25 25 H 1.09002 * 109.46910 * 60.00701 * 1 2 3 26 26 H 1.08993 * 109.47291 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47035 * 300.00846 * 1 2 3 28 28 H 1.08002 * 120.41946 * 0.02562 * 5 4 2 29 29 H 1.08000 * 119.61582 * 180.29273 * 6 5 4 30 30 H 1.08002 * 119.61717 * 180.02562 * 8 7 6 31 31 H 1.07999 * 120.41598 * 180.02562 * 9 8 7 32 32 H 1.08996 * 109.47014 * 95.62325 * 11 10 2 33 33 H 1.09007 * 109.46640 * 335.62096 * 11 10 2 34 34 H 1.08995 * 109.46771 * 215.62147 * 11 10 2 35 35 H 0.96998 * 120.00616 * 359.97438 * 14 12 10 36 36 H 1.09001 * 109.46980 * 299.99959 * 15 14 12 37 37 H 1.08997 * 109.47418 * 59.99370 * 15 14 12 38 38 H 1.09005 * 109.46470 * 299.99561 * 16 15 14 39 39 H 1.08997 * 109.47418 * 59.99382 * 16 15 14 40 40 H 0.97004 * 120.00007 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2303 5 6 2.6269 -0.0043 -2.2647 6 6 3.0803 -0.6906 -3.3754 7 7 2.9432 -1.9992 -3.4620 8 6 2.3779 -2.7024 -2.5003 9 6 1.9058 -2.0853 -1.3573 10 7 2.0182 -0.6905 1.1963 11 6 1.5577 -2.0482 1.4977 12 6 2.8912 -0.0767 2.0196 13 8 3.2730 1.0502 1.7697 14 7 3.3407 -0.7121 3.1199 15 6 4.2891 -0.0448 4.0151 16 6 4.6352 -0.9769 5.1780 17 6 5.6113 -0.2906 6.0985 18 1 5.9511 0.7101 5.8761 19 6 6.0712 -0.9406 7.2240 20 7 5.6578 -2.1594 7.4945 21 14 7.2806 -0.0897 8.3654 22 1 6.5341 0.6608 9.4070 23 1 8.1484 -1.1057 9.0135 24 1 8.1208 0.8523 7.5830 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8899 28 1 2.7383 1.0681 -2.2015 29 1 3.5489 -0.1483 -4.1833 30 1 2.2835 -3.7730 -2.6067 31 1 1.4442 -2.6668 -0.5730 32 1 2.2797 -2.7699 1.1158 33 1 0.5901 -2.2170 1.0248 34 1 1.4606 -2.1677 2.5767 35 1 3.0357 -1.6110 3.3195 36 1 5.1967 0.2019 3.4642 37 1 3.8403 0.8693 4.4038 38 1 3.7273 -1.2231 5.7288 39 1 5.0838 -1.8912 4.7897 40 1 5.9811 -2.6166 8.2866 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273024689.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:18:43 Heat of formation + Delta-G solvation = 6.957579 kcal Electronic energy + Delta-G solvation = -21084.277503 eV Core-core repulsion = 17899.253616 eV Total energy + Delta-G solvation = -3185.023887 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.77493 -39.62023 -36.63275 -34.86285 -33.36998 -32.53659 -31.40006 -30.42702 -29.18701 -27.26434 -24.99357 -24.12294 -23.56349 -21.80290 -20.88575 -19.61532 -18.02982 -17.05064 -16.68578 -16.25867 -16.05107 -15.49612 -15.42358 -14.54044 -14.33043 -14.15513 -14.05479 -13.79434 -13.56683 -13.40895 -12.77272 -12.56414 -12.55839 -12.30915 -12.18602 -11.69562 -11.33110 -11.17061 -11.04210 -10.63782 -10.34204 -9.96667 -9.80965 -9.69977 -9.55014 -9.32709 -9.27177 -8.80762 -8.48707 -8.26501 -6.10054 -4.12707 0.95789 1.02527 2.80219 3.29274 3.35416 3.39965 3.46893 3.65709 4.23038 4.28491 4.33457 4.46007 4.58660 4.85588 4.86844 4.91742 5.01494 5.04555 5.27191 5.30744 5.32786 5.45651 5.52047 5.55371 5.66088 5.75891 5.90068 6.11416 6.22196 6.37819 6.49926 6.52877 6.75286 6.96223 7.08630 7.53841 7.61542 7.78533 7.88866 8.21625 8.33108 8.88588 8.94668 9.52159 11.01633 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029034 B = 0.003203 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.167432 B = 8740.562497 C = 8841.533344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.191 3.809 3 H 0.114 0.886 4 C -0.046 4.046 5 C -0.160 4.160 6 C 0.098 3.902 7 N -0.489 5.489 8 C 0.096 3.904 9 C -0.170 4.170 10 N -0.631 5.631 11 C 0.070 3.930 12 C 0.702 3.298 13 O -0.595 6.595 14 N -0.735 5.735 15 C 0.139 3.861 16 C 0.013 3.987 17 C -0.521 4.521 18 H 0.060 0.940 19 C 0.059 3.941 20 N -0.895 5.895 21 Si 0.897 3.103 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.272 1.272 25 H 0.070 0.930 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.136 0.864 29 H 0.155 0.845 30 H 0.154 0.846 31 H 0.140 0.860 32 H 0.057 0.943 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.394 0.606 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.022 0.978 39 H 0.022 0.978 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.216 -1.051 -18.180 21.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.087 3.913 3 H 0.132 0.868 4 C -0.055 4.055 5 C -0.180 4.180 6 C -0.059 4.059 7 N -0.198 5.198 8 C -0.061 4.061 9 C -0.190 4.190 10 N -0.369 5.369 11 C -0.073 4.073 12 C 0.404 3.596 13 O -0.474 6.474 14 N -0.389 5.389 15 C 0.016 3.984 16 C -0.024 4.024 17 C -0.559 4.559 18 H 0.078 0.922 19 C -0.143 4.143 20 N -0.534 5.534 21 Si 0.725 3.275 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.197 1.197 25 H 0.088 0.912 26 H 0.080 0.920 27 H 0.088 0.912 28 H 0.154 0.846 29 H 0.172 0.828 30 H 0.171 0.829 31 H 0.157 0.843 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.090 0.910 35 H 0.228 0.772 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.040 0.960 39 H 0.040 0.960 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.575 -0.786 -18.920 22.194 hybrid contribution 0.237 0.200 1.581 1.611 sum -11.338 -0.586 -17.339 20.726 Atomic orbital electron populations 1.22150 0.93673 1.02652 1.03031 1.19760 0.93953 0.97280 0.80325 0.86782 1.20707 0.95102 0.94300 0.95440 1.22088 0.99487 1.01732 0.94730 1.22747 0.96057 0.90226 0.96891 1.67657 1.13978 1.08315 1.29889 1.22753 0.93801 1.00190 0.89328 1.22321 1.01971 0.95048 0.99677 1.47013 1.48137 1.16549 1.25187 1.21907 1.00068 0.83516 1.01826 1.15979 0.79062 0.84388 0.80216 1.90869 1.62583 1.18355 1.75548 1.45661 1.48955 1.19560 1.24765 1.21619 0.89849 0.96578 0.90365 1.19321 0.97163 0.94658 0.91264 1.21047 1.25922 1.01459 1.07511 0.92208 1.24992 0.96616 0.94884 0.97791 1.69956 1.44310 1.12056 1.27034 0.86507 0.80992 0.79235 0.80799 1.20556 1.21173 1.19701 0.91154 0.91991 0.91222 0.84579 0.82756 0.82855 0.84265 0.92453 0.90430 0.91034 0.77172 0.92758 0.92719 0.96003 0.96003 0.92856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.31 8.98 37.16 0.33 -0.97 16 2 C 0.19 2.15 2.97 -69.08 -0.20 1.94 16 3 H 0.11 1.50 6.76 -51.93 -0.35 1.15 16 4 C -0.05 -0.49 4.97 -104.32 -0.52 -1.01 16 5 C -0.16 -1.65 9.77 -39.44 -0.39 -2.04 16 6 C 0.10 1.01 11.18 -17.55 -0.20 0.81 16 7 N -0.49 -5.68 10.36 -13.25 -0.14 -5.82 16 8 C 0.10 0.96 11.18 -17.55 -0.20 0.76 16 9 C -0.17 -1.64 8.70 -39.44 -0.34 -1.98 16 10 N -0.63 -8.15 2.74 -181.00 -0.50 -8.65 16 11 C 0.07 0.65 7.79 59.85 0.47 1.12 16 12 C 0.70 12.41 8.28 -86.92 -0.72 11.69 16 13 O -0.59 -12.68 15.68 5.29 0.08 -12.59 16 14 N -0.74 -13.20 5.42 -65.22 -0.35 -13.55 16 15 C 0.14 3.00 5.61 -4.04 -0.02 2.98 16 16 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 17 C -0.52 -14.47 9.11 -34.44 -0.31 -14.78 16 18 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 19 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 20 N -0.89 -26.07 13.29 55.43 0.74 -25.33 16 21 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 24 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 25 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.44 6.35 -51.93 -0.33 0.11 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.14 1.20 8.03 -52.49 -0.42 0.78 16 29 H 0.16 1.18 8.06 -52.49 -0.42 0.76 16 30 H 0.15 1.13 8.06 -52.49 -0.42 0.71 16 31 H 0.14 1.06 4.64 -52.49 -0.24 0.82 16 32 H 0.06 0.51 7.20 -51.93 -0.37 0.13 16 33 H 0.08 0.52 5.31 -51.93 -0.28 0.25 16 34 H 0.07 0.66 6.67 -51.93 -0.35 0.31 16 35 H 0.39 6.13 6.33 -40.82 -0.26 5.88 16 36 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 38 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.26 7.20 8.31 -40.82 -0.34 6.87 16 LS Contribution 329.75 15.07 4.97 4.97 Total: -1.00 -33.62 329.75 -8.08 -41.71 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -5.52 Total: 2.65 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: -2.34 Total: 0.26 kcal Atomic # 7 Polarization: -53.10 SS G_CDS: -0.25 Total: -53.35 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: 0.08 Total: -12.59 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.62 -8.08 -41.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273024689.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.664 kcal (2) G-P(sol) polarization free energy of solvation -33.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds