Wall clock time and date at job start Mon Mar 30 2020 20:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47499 * 2 1 4 4 C 1.50695 * 109.47472 * 239.99126 * 2 1 3 5 5 C 1.38651 * 120.78832 * 108.58623 * 4 2 1 6 6 C 1.38206 * 119.16102 * 179.75504 * 5 4 2 7 7 N 1.31869 * 120.76369 * 0.53587 * 6 5 4 8 8 C 1.31868 * 121.72517 * 359.74207 * 7 6 5 9 9 C 1.38206 * 120.76418 * 359.97405 * 8 7 6 10 10 N 1.46502 * 109.46661 * 119.99200 * 2 1 3 11 11 C 1.46505 * 120.00116 * 53.90857 * 10 2 1 12 12 C 1.34783 * 120.00131 * 233.90430 * 10 2 1 13 13 O 1.21582 * 119.99532 * 0.02562 * 12 10 2 14 14 N 1.34773 * 119.99765 * 180.02562 * 12 10 2 15 15 C 1.46503 * 119.99825 * 180.02562 * 14 12 10 16 16 C 1.53001 * 109.47245 * 179.97438 * 15 14 12 17 17 C 1.50705 * 109.47124 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99510 * 359.97438 * 17 16 15 19 19 C 1.37868 * 119.99994 * 180.02562 * 17 16 15 20 20 N 1.31515 * 119.99979 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00047 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47187 * 89.99589 * 21 19 17 23 23 H 1.48504 * 109.46921 * 209.99754 * 21 19 17 24 24 H 1.48500 * 109.46912 * 329.99096 * 21 19 17 25 25 H 1.09002 * 109.46910 * 60.00701 * 1 2 3 26 26 H 1.08993 * 109.47291 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47035 * 300.00846 * 1 2 3 28 28 H 1.08002 * 120.41946 * 0.02562 * 5 4 2 29 29 H 1.08000 * 119.61582 * 180.29273 * 6 5 4 30 30 H 1.08002 * 119.61717 * 180.02562 * 8 7 6 31 31 H 1.07999 * 120.41598 * 180.02562 * 9 8 7 32 32 H 1.08996 * 109.47014 * 95.62325 * 11 10 2 33 33 H 1.09007 * 109.46640 * 335.62096 * 11 10 2 34 34 H 1.08995 * 109.46771 * 215.62147 * 11 10 2 35 35 H 0.96998 * 120.00616 * 359.97438 * 14 12 10 36 36 H 1.09001 * 109.46980 * 299.99959 * 15 14 12 37 37 H 1.08997 * 109.47418 * 59.99370 * 15 14 12 38 38 H 1.09005 * 109.46470 * 299.99561 * 16 15 14 39 39 H 1.08997 * 109.47418 * 59.99382 * 16 15 14 40 40 H 0.97004 * 120.00007 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2303 5 6 2.6269 -0.0043 -2.2647 6 6 3.0803 -0.6906 -3.3754 7 7 2.9432 -1.9992 -3.4620 8 6 2.3779 -2.7024 -2.5003 9 6 1.9058 -2.0853 -1.3573 10 7 2.0182 -0.6905 1.1963 11 6 1.5577 -2.0482 1.4977 12 6 2.8912 -0.0767 2.0196 13 8 3.2730 1.0502 1.7697 14 7 3.3407 -0.7121 3.1199 15 6 4.2891 -0.0448 4.0151 16 6 4.6352 -0.9769 5.1780 17 6 5.6113 -0.2906 6.0985 18 1 5.9511 0.7101 5.8761 19 6 6.0712 -0.9406 7.2240 20 7 5.6578 -2.1594 7.4945 21 14 7.2806 -0.0897 8.3654 22 1 6.5341 0.6608 9.4070 23 1 8.1484 -1.1057 9.0135 24 1 8.1208 0.8523 7.5830 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8899 28 1 2.7383 1.0681 -2.2015 29 1 3.5489 -0.1483 -4.1833 30 1 2.2835 -3.7730 -2.6067 31 1 1.4442 -2.6668 -0.5730 32 1 2.2797 -2.7699 1.1158 33 1 0.5901 -2.2170 1.0248 34 1 1.4606 -2.1677 2.5767 35 1 3.0357 -1.6110 3.3195 36 1 5.1967 0.2019 3.4642 37 1 3.8403 0.8693 4.4038 38 1 3.7273 -1.2231 5.7288 39 1 5.0838 -1.8912 4.7897 40 1 5.9811 -2.6166 8.2866 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273024689.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:18:42 Heat of formation + Delta-G solvation = -15.050254 kcal Electronic energy + Delta-G solvation = -21085.231835 eV Core-core repulsion = 17899.253616 eV Total energy + Delta-G solvation = -3185.978219 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.74959 -40.73280 -37.75243 -36.54518 -34.99149 -33.89583 -32.16625 -31.60612 -30.63768 -28.16806 -26.75387 -25.14057 -24.32783 -23.22781 -22.38223 -20.81782 -19.26410 -18.51599 -17.93472 -17.50440 -16.90427 -16.71822 -16.48983 -16.43810 -15.49840 -15.42438 -15.15755 -14.80969 -14.58126 -14.37184 -14.29098 -14.04632 -13.45007 -13.31357 -13.12016 -12.96473 -12.92368 -12.52707 -12.44086 -12.24963 -12.11891 -11.66509 -11.48087 -11.18606 -10.60740 -10.60612 -10.52245 -10.16052 -10.07134 -9.56637 -8.24281 -6.34507 0.20935 0.21896 1.41958 1.42525 1.53644 1.64582 2.09089 2.40672 2.85514 3.07219 3.10632 3.47159 3.61236 3.82841 4.09499 4.11749 4.19221 4.26465 4.30067 4.44984 4.49700 4.57947 4.64722 4.74199 4.78411 4.83993 4.85298 4.93118 5.03595 5.20974 5.27883 5.32545 5.47251 5.54387 5.58172 5.77165 5.78459 5.90580 6.16597 6.78241 6.94888 7.02513 7.34820 7.51861 8.87630 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029034 B = 0.003203 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.167432 B = 8740.562497 C = 8841.533344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.190 3.810 3 H 0.089 0.911 4 C -0.058 4.058 5 C -0.171 4.171 6 C 0.089 3.911 7 N -0.513 5.513 8 C 0.088 3.912 9 C -0.168 4.168 10 N -0.621 5.621 11 C 0.059 3.941 12 C 0.698 3.302 13 O -0.637 6.637 14 N -0.731 5.731 15 C 0.160 3.840 16 C 0.026 3.974 17 C -0.547 4.547 18 H 0.058 0.942 19 C 0.008 3.992 20 N -0.926 5.926 21 Si 0.965 3.035 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.267 1.267 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.063 0.937 28 H 0.143 0.857 29 H 0.174 0.826 30 H 0.178 0.822 31 H 0.162 0.838 32 H 0.067 0.933 33 H 0.111 0.889 34 H 0.073 0.927 35 H 0.406 0.594 36 H 0.040 0.960 37 H 0.044 0.956 38 H 0.010 0.990 39 H 0.008 0.992 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.980 -1.748 -18.560 22.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.086 3.914 3 H 0.107 0.893 4 C -0.067 4.067 5 C -0.191 4.191 6 C -0.067 4.067 7 N -0.223 5.223 8 C -0.068 4.068 9 C -0.188 4.188 10 N -0.357 5.357 11 C -0.082 4.082 12 C 0.399 3.601 13 O -0.519 6.519 14 N -0.387 5.387 15 C 0.035 3.965 16 C -0.012 4.012 17 C -0.586 4.586 18 H 0.076 0.924 19 C -0.191 4.191 20 N -0.565 5.565 21 Si 0.789 3.211 22 H -0.197 1.197 23 H -0.205 1.205 24 H -0.192 1.192 25 H 0.102 0.898 26 H 0.100 0.900 27 H 0.082 0.918 28 H 0.161 0.839 29 H 0.191 0.809 30 H 0.195 0.805 31 H 0.179 0.821 32 H 0.086 0.914 33 H 0.129 0.871 34 H 0.092 0.908 35 H 0.243 0.757 36 H 0.059 0.941 37 H 0.063 0.937 38 H 0.028 0.972 39 H 0.026 0.974 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.385 -1.522 -19.335 23.011 hybrid contribution 0.430 0.379 1.630 1.728 sum -11.954 -1.143 -17.705 21.393 Atomic orbital electron populations 1.22106 0.91075 1.04055 1.03424 1.19860 0.95819 0.95907 0.79832 0.89316 1.20742 0.95745 0.95026 0.95229 1.22269 0.99560 1.02332 0.94940 1.23089 0.96001 0.90171 0.97462 1.67692 1.14828 1.08922 1.30868 1.23217 0.93179 1.01385 0.89052 1.22534 1.01564 0.94568 1.00110 1.47044 1.46426 1.17691 1.24561 1.22228 1.01981 0.81428 1.02575 1.16133 0.79558 0.84002 0.80397 1.90838 1.64241 1.20323 1.76513 1.45347 1.48614 1.20025 1.24710 1.21082 0.90071 0.95569 0.89731 1.19113 0.95942 0.94377 0.91770 1.21455 1.26810 1.01764 1.08523 0.92366 1.25850 0.98343 0.95538 0.99324 1.70053 1.45417 1.13314 1.27729 0.85452 0.78686 0.78284 0.78676 1.19696 1.20484 1.19154 0.89805 0.90004 0.91814 0.83881 0.80866 0.80453 0.82086 0.91443 0.87068 0.90816 0.75709 0.94124 0.93739 0.97173 0.97413 0.92517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 8.98 71.98 0.65 -1.49 16 2 C 0.19 4.05 2.97 44.24 0.13 4.18 16 3 H 0.09 2.37 6.76 -2.39 -0.02 2.35 16 4 C -0.06 -1.16 4.97 -19.67 -0.10 -1.26 16 5 C -0.17 -3.41 9.77 22.36 0.22 -3.19 16 6 C 0.09 1.75 11.18 84.68 0.95 2.70 16 7 N -0.51 -11.24 10.36 -195.84 -2.03 -13.27 16 8 C 0.09 1.58 11.18 84.68 0.95 2.52 16 9 C -0.17 -2.83 8.70 22.36 0.19 -2.64 16 10 N -0.62 -15.25 2.74 -844.84 -2.32 -17.57 16 11 C 0.06 0.95 7.79 127.77 1.00 1.94 16 12 C 0.70 24.62 8.28 179.05 1.48 26.10 16 13 O -0.64 -27.74 15.68 -3.97 -0.06 -27.81 16 14 N -0.73 -26.24 5.42 -478.53 -2.59 -28.84 16 15 C 0.16 7.05 5.61 86.38 0.48 7.54 16 16 C 0.03 1.29 5.09 29.85 0.15 1.44 16 17 C -0.55 -30.70 9.11 25.60 0.23 -30.47 16 18 H 0.06 3.21 7.74 -2.91 -0.02 3.18 16 19 C 0.01 0.46 5.46 84.65 0.46 0.93 16 20 N -0.93 -54.01 13.29 21.44 0.28 -53.72 16 21 Si 0.96 43.61 29.54 68.60 2.03 45.64 16 22 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 23 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 24 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 25 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.08 0.85 6.35 -2.39 -0.02 0.84 16 27 H 0.06 1.01 8.14 -2.39 -0.02 1.00 16 28 H 0.14 2.52 8.03 -2.91 -0.02 2.50 16 29 H 0.17 2.50 8.06 -2.91 -0.02 2.48 16 30 H 0.18 2.13 8.06 -2.91 -0.02 2.11 16 31 H 0.16 1.87 4.64 -2.91 -0.01 1.85 16 32 H 0.07 0.99 7.20 -2.39 -0.02 0.98 16 33 H 0.11 1.04 5.31 -2.38 -0.01 1.03 16 34 H 0.07 1.19 6.67 -2.39 -0.02 1.17 16 35 H 0.41 12.40 6.33 -92.71 -0.59 11.82 16 36 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.01 0.52 8.14 -2.38 -0.02 0.50 16 39 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 40 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 Total: -1.00 -72.76 329.75 2.57 -70.19 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: 0.46 Total: 17.07 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: 6.80 Total: 8.31 kcal Atomic # 7 Polarization: -106.74 SS G_CDS: -6.66 Total: -113.40 kcal Atomic # 8 Polarization: -27.74 SS G_CDS: -0.06 Total: -27.81 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -72.76 2.57 -70.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273024689.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.138 kcal (2) G-P(sol) polarization free energy of solvation -72.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds