Wall clock time and date at job start Mon Mar 30 2020 20:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50701 * 119.99922 * 2 1 4 4 N 1.46904 * 109.47045 * 125.58698 * 3 2 1 5 5 C 1.46899 * 110.99803 * 294.21966 * 4 3 2 6 6 C 1.50698 * 109.47248 * 294.20328 * 5 4 3 7 7 C 1.38220 * 120.01431 * 106.89676 * 6 5 4 8 8 C 1.38223 * 120.02797 * 179.97438 * 7 6 5 9 9 C 1.38273 * 120.05067 * 0.02562 * 8 7 6 10 10 C 1.38170 * 120.02385 * 359.97438 * 9 8 7 11 11 C 1.38441 * 120.01294 * 286.88219 * 6 5 4 12 12 F 1.35095 * 120.02829 * 359.97438 * 11 6 5 13 13 C 1.46893 * 110.99717 * 58.17209 * 4 3 2 14 14 H 1.09005 * 109.47543 * 298.33748 * 13 4 3 15 15 C 1.53000 * 109.46900 * 178.33988 * 13 4 3 16 16 C 1.52998 * 109.47224 * 58.33934 * 13 4 3 17 17 C 1.50700 * 109.47130 * 184.02304 * 16 13 4 18 18 H 1.08000 * 120.00091 * 5.13156 * 17 16 13 19 19 C 1.37888 * 120.00060 * 185.13800 * 17 16 13 20 20 N 1.31510 * 119.99652 * 180.02562 * 19 17 16 21 21 Si 1.86793 * 119.99736 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.46940 * 90.00380 * 21 19 17 23 23 H 1.48498 * 109.47337 * 209.99947 * 21 19 17 24 24 H 1.48496 * 109.47635 * 330.00252 * 21 19 17 25 25 H 1.08003 * 119.99553 * 179.97438 * 1 2 3 26 26 H 1.07997 * 119.99880 * 359.97438 * 1 2 3 27 27 H 1.07997 * 119.99880 * 180.02562 * 2 1 3 28 28 H 1.08998 * 109.47043 * 5.58643 * 3 2 1 29 29 H 1.08997 * 109.47257 * 245.58907 * 3 2 1 30 30 H 1.08998 * 109.46960 * 174.20856 * 5 4 3 31 31 H 1.08996 * 109.47586 * 54.20314 * 5 4 3 32 32 H 1.07999 * 119.98579 * 359.96406 * 7 6 5 33 33 H 1.07996 * 119.97376 * 179.72854 * 8 7 6 34 34 H 1.07997 * 119.98451 * 179.97438 * 9 8 7 35 35 H 1.08000 * 120.00948 * 180.02562 * 10 9 8 36 36 H 1.09002 * 109.47044 * 299.99719 * 15 13 4 37 37 H 1.08994 * 109.47118 * 59.99794 * 15 13 4 38 38 H 1.09006 * 109.47109 * 180.02562 * 15 13 4 39 39 H 1.09006 * 109.47185 * 304.02248 * 16 13 4 40 40 H 1.09004 * 109.47201 * 64.02323 * 16 13 4 41 41 H 0.97001 * 119.99452 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0064 1.3262 1.1264 5 6 2.2927 1.3284 2.4103 6 6 1.5237 2.6162 2.5554 7 6 0.1473 2.6176 2.4292 8 6 -0.5584 3.7986 2.5628 9 6 0.1116 4.9800 2.8223 10 6 1.4875 4.9811 2.9489 11 6 2.1956 3.7984 2.8155 12 9 3.5408 3.7982 2.9399 13 6 3.9454 0.1993 1.0479 14 1 3.3929 -0.7387 1.1038 15 6 4.9352 0.2783 2.2120 16 6 4.7092 0.2631 -0.2762 17 6 5.6004 -0.9457 -0.4009 18 1 5.5593 -1.7261 0.3446 19 6 6.4683 -1.0555 -1.4667 20 7 7.2456 -2.1107 -1.5756 21 14 6.5390 0.2940 -2.7563 22 1 7.5494 1.3068 -2.3581 23 1 6.9167 -0.2931 -4.0670 24 1 5.2072 0.9411 -2.8693 25 1 -0.5399 -0.9354 -0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3594 2.1311 0.1000 29 1 2.6130 1.4074 -0.9358 30 1 3.0110 1.2403 3.2254 31 1 1.6010 0.4866 2.4430 32 1 -0.3771 1.6956 2.2260 33 1 -1.6334 3.7994 2.4597 34 1 -0.4407 5.9022 2.9261 35 1 2.0106 5.9039 3.1519 36 1 5.4877 1.2162 2.1560 37 1 4.3910 0.2328 3.1552 38 1 5.6323 -0.5577 2.1535 39 1 4.0004 0.2789 -1.1042 40 1 5.3177 1.1672 -0.3015 41 1 7.8564 -2.1877 -2.3252 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298078041.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:19:43 Heat of formation + Delta-G solvation = -13.404966 kcal Electronic energy + Delta-G solvation = -21972.777156 eV Core-core repulsion = 18766.950321 eV Total energy + Delta-G solvation = -3205.826835 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.69963 -40.54355 -39.12414 -35.57971 -34.38748 -33.55895 -31.57903 -31.07792 -29.68223 -27.50295 -25.49039 -24.35891 -23.60133 -22.07045 -21.75471 -19.65572 -19.12636 -18.33189 -17.36272 -16.94527 -16.86409 -16.53104 -16.28606 -16.04202 -15.51163 -15.16895 -14.92243 -14.71318 -14.23095 -14.09331 -13.98133 -13.62546 -13.46567 -13.21456 -13.06545 -12.84005 -12.70487 -12.30907 -12.22317 -12.07600 -11.91845 -11.75501 -11.67930 -11.41537 -11.21706 -10.74892 -10.29244 -9.85166 -9.50369 -9.15068 -8.28562 -6.29980 0.28880 0.33946 1.33942 1.34496 1.35589 1.46842 2.35376 2.66983 3.07241 3.18438 3.48068 3.75948 3.86801 4.04587 4.14121 4.14690 4.21311 4.33811 4.37427 4.46521 4.53013 4.63615 4.65269 4.76023 4.90144 4.98868 5.04817 5.07294 5.13949 5.22662 5.26850 5.33481 5.35912 5.46719 5.52049 5.55481 5.65656 5.71315 5.77879 6.04537 6.15559 6.28240 6.35676 6.76213 7.33417 8.87920 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021962 B = 0.005076 C = 0.004722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.642297 B = 5514.609356 C = 5927.715991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.203 4.203 3 C 0.081 3.919 4 N -0.530 5.530 5 C 0.091 3.909 6 C -0.121 4.121 7 C -0.091 4.091 8 C -0.127 4.127 9 C -0.089 4.089 10 C -0.166 4.166 11 C 0.090 3.910 12 F -0.151 7.151 13 C 0.104 3.896 14 H 0.030 0.970 15 C -0.127 4.127 16 C 0.006 3.994 17 C -0.516 4.516 18 H 0.038 0.962 19 C 0.010 3.990 20 N -0.949 5.949 21 Si 0.942 3.058 22 H -0.271 1.271 23 H -0.283 1.283 24 H -0.253 1.253 25 H 0.106 0.894 26 H 0.115 0.885 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.053 0.947 32 H 0.141 0.859 33 H 0.159 0.841 34 H 0.161 0.839 35 H 0.143 0.857 36 H 0.048 0.952 37 H 0.061 0.939 38 H 0.046 0.954 39 H 0.017 0.983 40 H 0.012 0.988 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.804 14.221 8.738 25.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.223 4.223 3 C -0.046 4.046 4 N -0.253 5.253 5 C -0.036 4.036 6 C -0.123 4.123 7 C -0.109 4.109 8 C -0.145 4.145 9 C -0.107 4.107 10 C -0.185 4.185 11 C 0.070 3.930 12 F -0.130 7.130 13 C -0.004 4.004 14 H 0.048 0.952 15 C -0.184 4.184 16 C -0.032 4.032 17 C -0.554 4.554 18 H 0.056 0.944 19 C -0.186 4.186 20 N -0.590 5.590 21 Si 0.766 3.234 22 H -0.196 1.196 23 H -0.209 1.209 24 H -0.176 1.176 25 H 0.125 0.875 26 H 0.133 0.867 27 H 0.106 0.894 28 H 0.107 0.893 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.071 0.929 32 H 0.159 0.841 33 H 0.176 0.824 34 H 0.179 0.821 35 H 0.161 0.839 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.065 0.935 39 H 0.036 0.964 40 H 0.030 0.970 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -19.314 14.577 8.620 25.687 hybrid contribution 0.822 -0.901 -0.678 1.396 sum -18.492 13.676 7.942 24.332 Atomic orbital electron populations 1.23994 0.94676 1.02911 0.98635 1.23560 0.97484 0.99259 1.01950 1.21350 0.93976 0.94897 0.94367 1.62329 1.16990 1.44014 1.01950 1.20986 0.96254 0.93856 0.92528 1.19912 0.95132 0.93803 1.03414 1.21215 0.91599 1.00071 0.98017 1.21539 1.01693 0.91647 0.99629 1.21376 0.92520 0.99900 0.96944 1.21410 0.96118 0.96745 1.04191 1.17955 0.76834 0.95358 1.02812 1.91473 1.30768 1.97347 1.93368 1.21328 0.92301 0.90391 0.96378 0.95240 1.21712 0.98656 1.01392 0.96658 1.19490 0.94773 0.95062 0.93863 1.21329 1.20465 1.05043 1.08613 0.94401 1.25837 0.94866 0.97822 1.00115 1.70047 1.25695 1.30850 1.32438 0.85776 0.79668 0.79558 0.78353 1.19620 1.20883 1.17628 0.87540 0.86650 0.89420 0.89284 0.91648 0.90326 0.92888 0.84085 0.82387 0.82149 0.83885 0.93249 0.92028 0.93462 0.96445 0.96954 0.92595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.53 13.99 67.77 0.95 -2.59 16 2 C -0.20 -5.90 7.66 25.64 0.20 -5.70 16 3 C 0.08 2.57 5.20 85.56 0.44 3.01 16 4 N -0.53 -18.35 4.57 -880.09 -4.02 -22.37 16 5 C 0.09 2.63 4.40 85.56 0.38 3.01 16 6 C -0.12 -3.02 4.37 -19.82 -0.09 -3.10 16 7 C -0.09 -1.66 9.08 22.26 0.20 -1.46 16 8 C -0.13 -1.75 10.04 22.27 0.22 -1.53 16 9 C -0.09 -1.27 10.04 22.26 0.22 -1.04 16 10 C -0.17 -3.28 10.03 22.31 0.22 -3.05 16 11 C 0.09 2.38 7.25 22.38 0.16 2.54 16 12 F -0.15 -4.86 16.79 44.97 0.75 -4.11 16 13 C 0.10 4.26 1.72 44.92 0.08 4.34 16 14 H 0.03 1.26 6.42 -2.38 -0.02 1.25 16 15 C -0.13 -5.06 8.72 71.98 0.63 -4.43 16 16 C 0.01 0.28 3.36 29.85 0.10 0.38 16 17 C -0.52 -30.06 8.85 25.60 0.23 -29.83 16 18 H 0.04 2.40 7.43 -2.91 -0.02 2.38 16 19 C 0.01 0.62 5.47 84.66 0.46 1.08 16 20 N -0.95 -60.29 13.96 21.45 0.30 -59.99 16 21 Si 0.94 46.08 27.37 68.60 1.88 47.96 16 22 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 23 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 24 H -0.25 -11.69 6.69 99.48 0.67 -11.02 16 25 H 0.11 2.01 8.06 -2.91 -0.02 1.99 16 26 H 0.12 1.97 7.70 -2.91 -0.02 1.95 16 27 H 0.09 3.04 6.75 -2.91 -0.02 3.02 16 28 H 0.09 2.44 6.30 -2.39 -0.02 2.42 16 29 H 0.07 2.36 6.29 -2.39 -0.02 2.34 16 30 H 0.08 2.40 5.74 -2.39 -0.01 2.38 16 31 H 0.05 1.44 6.90 -2.39 -0.02 1.42 16 32 H 0.14 2.18 7.51 -2.91 -0.02 2.16 16 33 H 0.16 1.16 8.06 -2.91 -0.02 1.14 16 34 H 0.16 1.21 8.06 -2.91 -0.02 1.18 16 35 H 0.14 2.37 8.06 -2.91 -0.02 2.35 16 36 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.06 2.08 6.16 -2.39 -0.01 2.07 16 38 H 0.05 2.09 6.99 -2.38 -0.02 2.07 16 39 H 0.02 0.85 5.61 -2.38 -0.01 0.83 16 40 H 0.01 0.61 7.29 -2.39 -0.02 0.60 16 41 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 Total: -1.00 -68.65 329.54 4.29 -64.36 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: 0.97 Total: 12.54 kcal Atomic # 6 Polarization: -42.79 SS G_CDS: 4.41 Total: -38.38 kcal Atomic # 7 Polarization: -78.64 SS G_CDS: -3.73 Total: -82.36 kcal Atomic # 9 Polarization: -4.86 SS G_CDS: 0.75 Total: -4.11 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 1.88 Total: 47.96 kcal Total: -68.65 4.29 -64.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298078041.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.951 kcal (2) G-P(sol) polarization free energy of solvation -68.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds