Wall clock time and date at job start Mon Mar 30 2020 20:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.47359 * 2 1 4 4 C 1.53001 * 109.46812 * 240.00029 * 2 1 3 5 5 C 1.50697 * 109.47174 * 65.53043 * 4 2 1 6 6 H 1.07995 * 120.00134 * 5.04880 * 5 4 2 7 7 C 1.37883 * 120.00189 * 185.04616 * 5 4 2 8 8 N 1.31512 * 119.99595 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00161 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47114 * 60.00185 * 9 7 5 11 11 H 1.48503 * 109.47217 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47140 * 300.00245 * 9 7 5 13 13 N 1.46900 * 109.47070 * 120.00236 * 2 1 3 14 14 C 1.47902 * 110.99958 * 182.21552 * 13 2 1 15 15 C 1.53994 * 107.05772 * 145.84249 * 14 13 2 16 16 C 1.54598 * 105.13790 * 358.77472 * 15 14 13 17 17 H 1.09003 * 110.72166 * 96.57993 * 16 15 14 18 18 C 1.50704 * 110.72013 * 219.68121 * 16 15 14 19 19 C 1.38219 * 120.01196 * 58.55192 * 18 16 15 20 20 C 1.38220 * 120.02338 * 179.71722 * 19 18 16 21 21 C 1.38264 * 120.05244 * 0.02562 * 20 19 18 22 22 C 1.38173 * 120.02516 * 359.97438 * 21 20 19 23 23 C 1.38440 * 120.00912 * 238.26852 * 18 16 15 24 24 F 1.35096 * 120.02930 * 0.26153 * 23 18 16 25 25 C 1.48531 * 111.00085 * 299.61148 * 13 2 1 26 26 H 1.09000 * 109.46839 * 300.00370 * 1 2 3 27 27 H 1.09000 * 109.46769 * 59.99613 * 1 2 3 28 28 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47272 * 185.52865 * 4 2 1 30 30 H 1.09000 * 109.47497 * 305.53262 * 4 2 1 31 31 H 0.97006 * 119.99974 * 179.97438 * 8 7 5 32 32 H 1.08998 * 109.91439 * 26.48911 * 14 13 2 33 33 H 1.09001 * 109.91897 * 265.19933 * 14 13 2 34 34 H 1.09001 * 110.31003 * 239.85861 * 15 14 13 35 35 H 1.09000 * 110.38783 * 117.73178 * 15 14 13 36 36 H 1.07999 * 119.98441 * 359.70097 * 19 18 16 37 37 H 1.08003 * 119.97091 * 180.02562 * 20 19 18 38 38 H 1.08001 * 119.98524 * 179.97438 * 21 20 19 39 39 H 1.08006 * 120.01188 * 179.97438 * 22 21 20 40 40 H 1.09007 * 110.66391 * 81.84150 * 25 13 2 41 41 H 1.09006 * 110.66559 * 318.71885 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6525 0.0638 -2.4759 6 1 1.1703 1.0245 -2.3721 7 6 1.9137 -0.4445 -3.7307 8 7 2.5006 -1.6146 -3.8571 9 14 1.4328 0.5283 -5.2512 10 1 2.1319 1.8385 -5.2422 11 1 1.8192 -0.2311 -6.4674 12 1 -0.0354 0.7507 -5.2526 13 7 2.0197 -0.6925 1.1994 14 6 3.4972 -0.6662 1.2606 15 6 3.8862 -0.5717 2.7476 16 6 2.5442 -0.5148 3.5131 17 1 2.2620 -1.5050 3.8709 18 6 2.6248 0.4611 4.6586 19 6 2.9344 1.7864 4.4173 20 6 3.0026 2.6829 5.4671 21 6 2.7618 2.2552 6.7597 22 6 2.4521 0.9308 7.0033 23 6 2.3829 0.0318 5.9523 24 9 2.0797 -1.2632 6.1893 25 6 1.5511 -0.0137 2.4346 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1255 -0.8078 -1.2012 30 1 1.5980 -1.7163 -1.3002 31 1 2.6840 -1.9724 -4.7399 32 1 3.8757 0.2024 0.7218 33 1 3.9032 -1.5806 0.8279 34 1 4.4648 0.3338 2.9305 35 1 4.4559 -1.4512 3.0477 36 1 3.1234 2.1214 3.4081 37 1 3.2443 3.7184 5.2775 38 1 2.8158 2.9565 7.5792 39 1 2.2644 0.5968 8.0131 40 1 0.5330 -0.3177 2.6781 41 1 1.6149 1.0691 2.3263 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299441504.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:20:10 Heat of formation + Delta-G solvation = -29.632262 kcal Electronic energy + Delta-G solvation = -21353.196994 eV Core-core repulsion = 18146.666491 eV Total energy + Delta-G solvation = -3206.530503 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.99317 -39.81701 -38.23970 -34.71674 -32.58972 -31.23825 -30.67885 -28.87961 -27.92603 -26.58250 -23.95658 -23.05769 -22.29241 -21.37239 -19.94374 -19.04315 -17.78491 -16.68891 -16.54558 -15.98091 -15.68177 -15.23259 -14.76397 -14.48349 -14.27698 -13.67065 -13.57568 -13.23825 -12.98834 -12.78009 -12.64740 -12.20575 -12.00977 -11.80356 -11.50900 -11.36851 -11.29425 -10.93257 -10.84557 -10.74561 -10.68457 -10.38852 -10.33144 -9.85833 -9.21916 -9.11855 -9.08125 -8.75190 -8.32630 -7.77621 -5.97990 -3.99919 0.97865 1.01142 3.33462 3.38258 3.38597 3.40182 4.09841 4.29255 4.47580 4.52909 4.72131 4.79886 4.92948 5.03651 5.07332 5.16939 5.27699 5.37633 5.55020 5.65554 5.75351 5.84961 5.92104 5.97857 5.98481 6.03011 6.06443 6.14253 6.20220 6.32319 6.34130 6.38912 6.51200 6.67803 6.71425 6.92539 7.13347 7.50375 7.55257 7.76850 7.88788 8.09989 8.45351 9.06472 9.63054 11.13324 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034347 B = 0.003527 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.022416 B = 7936.110043 C = 8165.020955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.078 3.922 3 H 0.028 0.972 4 C 0.034 3.966 5 C -0.518 4.518 6 H 0.054 0.946 7 C 0.058 3.942 8 N -0.893 5.893 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.277 1.277 13 N -0.512 5.512 14 C 0.042 3.958 15 C -0.120 4.120 16 C -0.059 4.059 17 H 0.093 0.907 18 C -0.097 4.097 19 C -0.087 4.087 20 C -0.128 4.128 21 C -0.100 4.100 22 C -0.155 4.155 23 C 0.099 3.901 24 F -0.138 7.138 25 C 0.048 3.952 26 H 0.030 0.970 27 H 0.066 0.934 28 H 0.054 0.946 29 H 0.013 0.987 30 H 0.028 0.972 31 H 0.261 0.739 32 H 0.047 0.953 33 H 0.080 0.920 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.132 0.868 37 H 0.128 0.872 38 H 0.130 0.870 39 H 0.133 0.867 40 H 0.078 0.922 41 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.408 6.586 20.764 21.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.030 4.030 3 H 0.045 0.955 4 C -0.004 4.004 5 C -0.557 4.557 6 H 0.072 0.928 7 C -0.143 4.143 8 N -0.532 5.532 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.202 1.202 13 N -0.237 5.237 14 C -0.086 4.086 15 C -0.158 4.158 16 C -0.078 4.078 17 H 0.112 0.888 18 C -0.099 4.099 19 C -0.105 4.105 20 C -0.146 4.146 21 C -0.118 4.118 22 C -0.173 4.173 23 C 0.080 3.920 24 F -0.116 7.116 25 C -0.080 4.080 26 H 0.049 0.951 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.031 0.969 30 H 0.046 0.954 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.098 0.902 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.150 0.850 37 H 0.146 0.854 38 H 0.147 0.853 39 H 0.151 0.849 40 H 0.096 0.904 41 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 1.258 5.865 20.574 21.431 hybrid contribution 0.017 1.116 -0.829 1.390 sum 1.275 6.981 19.744 20.981 Atomic orbital electron populations 1.21723 0.95271 1.01639 1.00063 1.22042 0.95167 0.95114 0.90634 0.95452 1.19118 0.96015 0.96195 0.89044 1.21152 1.39202 1.04429 0.90918 0.92824 1.24986 0.95323 0.94975 0.99001 1.69962 1.42298 1.17602 1.23364 0.86691 0.78968 0.80021 0.82505 1.20347 1.21312 1.20247 1.64867 1.06643 1.50504 1.01681 1.22776 0.89452 1.01984 0.94408 1.22549 0.95926 1.02099 0.95275 1.21065 0.96834 0.97746 0.92139 0.88820 1.19946 1.01139 0.95724 0.93049 1.20981 0.97896 0.91771 0.99878 1.21208 1.00790 1.00039 0.92580 1.20975 0.98770 0.94848 0.97233 1.21120 1.03836 0.93773 0.98605 1.17582 1.02026 0.78809 0.93616 1.91486 1.90627 1.34405 1.95087 1.23240 0.98421 0.96555 0.89827 0.95123 0.91546 0.92647 0.96853 0.95397 0.92975 0.93508 0.90169 0.91562 0.91068 0.85006 0.85405 0.85251 0.84939 0.90376 0.93960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.53 8.88 37.16 0.33 -2.20 16 2 C 0.08 1.64 1.77 -67.71 -0.12 1.52 16 3 H 0.03 0.59 7.99 -51.93 -0.42 0.17 16 4 C 0.03 0.87 4.48 -27.88 -0.12 0.75 16 5 C -0.52 -14.47 8.31 -34.44 -0.29 -14.75 16 6 H 0.05 1.45 7.29 -52.49 -0.38 1.07 16 7 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 8 N -0.89 -26.84 13.29 55.43 0.74 -26.11 16 9 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 N -0.51 -9.44 5.11 -222.50 -1.14 -10.58 16 14 C 0.04 0.71 5.38 -2.75 -0.01 0.69 16 15 C -0.12 -1.62 6.41 -25.37 -0.16 -1.79 16 16 C -0.06 -0.79 3.25 -89.91 -0.29 -1.09 16 17 H 0.09 1.33 7.22 -51.93 -0.37 0.96 16 18 C -0.10 -1.17 4.94 -104.55 -0.52 -1.69 16 19 C -0.09 -0.93 8.15 -39.59 -0.32 -1.26 16 20 C -0.13 -1.13 10.04 -39.58 -0.40 -1.53 16 21 C -0.10 -0.83 10.04 -39.60 -0.40 -1.23 16 22 C -0.15 -1.47 10.03 -39.52 -0.40 -1.87 16 23 C 0.10 1.17 7.25 -39.42 -0.29 0.88 16 24 F -0.14 -1.77 16.24 2.25 0.04 -1.74 16 25 C 0.05 0.73 4.81 -1.90 -0.01 0.72 16 26 H 0.03 0.51 6.94 -51.93 -0.36 0.15 16 27 H 0.07 1.36 7.10 -51.93 -0.37 0.99 16 28 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 29 H 0.01 0.36 6.99 -51.93 -0.36 0.00 16 30 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.05 0.83 7.63 -51.93 -0.40 0.43 16 33 H 0.08 1.44 8.09 -51.93 -0.42 1.02 16 34 H 0.07 0.81 7.05 -51.93 -0.37 0.44 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.13 1.38 7.27 -52.49 -0.38 1.00 16 37 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16 38 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 39 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 40 H 0.08 1.18 7.66 -51.92 -0.40 0.79 16 41 H 0.04 0.63 6.68 -51.93 -0.35 0.28 16 LS Contribution 329.52 15.07 4.97 4.97 Total: -1.00 -30.12 329.52 -9.76 -39.87 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -6.24 Total: -1.72 kcal Atomic # 6 Polarization: -18.18 SS G_CDS: -3.09 Total: -21.27 kcal Atomic # 7 Polarization: -36.29 SS G_CDS: -0.40 Total: -36.69 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.74 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.12 -9.76 -39.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299441504.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.242 kcal (2) G-P(sol) polarization free energy of solvation -30.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds