Wall clock time and date at job start Mon Mar 30 2020 20:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.45715 * 2 1 4 4 C 1.53359 * 109.46193 * 240.02956 * 2 1 3 5 5 C 1.50859 * 108.41144 * 190.00261 * 4 2 1 6 6 N 1.33582 * 128.03200 * 196.73946 * 5 4 2 7 7 C 1.30754 * 109.14530 * 179.84810 * 6 5 4 8 8 N 1.35310 * 108.76849 * 0.02562 * 7 6 5 9 9 C 1.46501 * 126.49547 * 180.02562 * 8 7 6 10 10 C 1.50697 * 109.47044 * 265.02613 * 9 8 7 11 11 O 1.21291 * 120.00369 * 0.02562 * 10 9 8 12 12 N 1.34783 * 120.00034 * 180.02562 * 10 9 8 13 13 C 1.37095 * 120.00053 * 179.97438 * 12 10 9 14 14 H 1.07993 * 120.00080 * 0.02562 * 13 12 10 15 15 C 1.38949 * 119.99483 * 180.02562 * 13 12 10 16 16 N 1.31412 * 120.00422 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 119.99706 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47245 * 59.99947 * 17 15 13 19 19 H 1.48497 * 109.47186 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.46934 * 299.99880 * 17 15 13 21 21 C 1.35030 * 123.99008 * 16.62260 * 5 4 2 22 22 C 1.50647 * 124.45368 * 0.23727 * 21 5 4 23 23 C 1.53113 * 109.46410 * 119.97441 * 2 1 3 24 24 H 1.09003 * 109.47880 * 70.04887 * 23 2 1 25 25 C 1.52998 * 109.47658 * 310.03807 * 23 2 1 26 26 H 1.08996 * 109.47362 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47102 * 299.97179 * 1 2 3 28 28 H 1.09004 * 109.47278 * 59.96554 * 1 2 3 29 29 H 1.09002 * 109.67690 * 70.27369 * 4 2 1 30 30 H 1.08996 * 109.67508 * 309.73646 * 4 2 1 31 31 H 1.08005 * 125.60993 * 180.02562 * 7 6 5 32 32 H 1.09003 * 109.46815 * 25.02581 * 9 8 7 33 33 H 1.08996 * 109.47187 * 145.02680 * 9 8 7 34 34 H 0.97003 * 119.99257 * 359.97438 * 12 10 9 35 35 H 0.97005 * 119.99759 * 180.02562 * 16 15 13 36 36 H 1.09002 * 109.68187 * 136.07681 * 22 21 5 37 37 H 1.09000 * 109.68483 * 256.62577 * 22 21 5 38 38 H 1.09001 * 109.47482 * 59.99601 * 25 23 2 39 39 H 1.08997 * 109.47431 * 180.02562 * 25 23 2 40 40 H 1.09007 * 109.47064 * 299.99772 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0409 -0.7223 -1.2526 5 6 3.5287 -0.9275 -1.1107 6 7 4.4131 -1.2267 -2.0662 7 6 5.6045 -1.3165 -1.5349 8 7 5.5085 -1.0737 -0.2072 9 6 6.6085 -1.0740 0.7603 10 6 6.6974 -2.4262 1.4195 11 8 5.9188 -3.3036 1.1110 12 7 7.6420 -2.6608 2.3518 13 6 7.7225 -3.8908 2.9518 14 1 7.0293 -4.6720 2.6771 15 6 8.6961 -4.1323 3.9133 16 7 9.5400 -3.1819 4.2471 17 14 8.8063 -5.8086 4.7304 18 1 9.0558 -6.8469 3.6985 19 1 9.9201 -5.8083 5.7125 20 1 7.5300 -6.1029 5.4302 21 6 4.1963 -0.8287 0.0589 22 6 3.5533 -0.5063 1.3825 23 6 2.0402 -0.7213 1.2505 24 1 1.8307 -1.7876 1.1660 25 6 1.3353 -0.1594 2.4868 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5134 0.8902 28 1 -0.3634 0.5144 -0.8897 29 1 1.8366 -0.1159 -2.1350 30 1 1.5446 -1.6881 -1.3475 31 1 6.5151 -1.5465 -2.0681 32 1 7.5450 -0.8583 0.2458 33 1 6.4263 -0.3118 1.5179 34 1 8.2649 -1.9592 2.5981 35 1 10.2199 -3.3507 4.9181 36 1 3.9517 -1.1649 2.1543 37 1 3.7550 0.5321 1.6454 38 1 0.2601 -0.3118 2.3927 39 1 1.6988 -0.6725 3.3770 40 1 1.5450 0.9069 2.5714 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335917795.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:20:26 Heat of formation + Delta-G solvation = -16.984515 kcal Electronic energy + Delta-G solvation = -21748.951756 eV Core-core repulsion = 18562.889662 eV Total energy + Delta-G solvation = -3186.062094 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.27078 -40.16258 -38.87456 -36.18899 -35.09118 -33.40959 -32.60770 -31.88790 -29.43706 -27.47693 -26.79019 -26.32617 -23.33790 -22.25739 -21.54213 -21.02520 -20.10333 -19.76358 -18.17186 -17.73424 -16.69835 -16.25676 -15.96951 -15.83090 -15.60765 -15.46240 -15.34067 -14.63692 -14.38458 -14.23961 -13.88854 -13.57544 -13.31469 -13.30425 -13.17019 -12.92317 -12.74067 -12.62376 -12.52097 -12.16895 -12.08128 -11.61118 -11.58719 -11.47161 -11.33503 -10.95784 -10.74770 -10.19478 -10.12823 -8.98804 -8.55088 -6.04710 1.05151 1.33653 1.39610 1.49348 1.84023 1.86445 2.16628 2.26072 3.06397 3.10493 3.48803 3.73620 3.79949 3.82027 3.95561 4.11804 4.16822 4.21963 4.29239 4.47163 4.53223 4.64372 4.68482 4.74042 4.81673 4.90082 4.91667 5.11014 5.15685 5.18662 5.25582 5.33111 5.33615 5.49001 5.57426 5.62213 5.85190 5.91682 6.27709 6.48218 7.01963 7.15790 7.39792 7.94874 8.60931 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023486 B = 0.004363 C = 0.003962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.894005 B = 6416.598172 C = 7066.023771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.075 4.075 3 H 0.078 0.922 4 C -0.023 4.023 5 C -0.029 4.029 6 N -0.520 5.520 7 C 0.170 3.830 8 N -0.430 5.430 9 C 0.102 3.898 10 C 0.419 3.581 11 O -0.626 6.626 12 N -0.556 5.556 13 C -0.338 4.338 14 H 0.075 0.925 15 C -0.003 4.003 16 N -0.911 5.911 17 Si 0.989 3.011 18 H -0.273 1.273 19 H -0.267 1.267 20 H -0.273 1.273 21 C -0.023 4.023 22 C -0.036 4.036 23 C -0.077 4.077 24 H 0.051 0.949 25 C -0.142 4.142 26 H 0.052 0.948 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.225 0.775 32 H 0.148 0.852 33 H 0.132 0.868 34 H 0.401 0.599 35 H 0.281 0.719 36 H 0.049 0.951 37 H 0.094 0.906 38 H 0.078 0.922 39 H 0.047 0.953 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.783 10.946 -3.641 15.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.094 4.094 3 H 0.097 0.903 4 C -0.061 4.061 5 C -0.159 4.159 6 N -0.238 5.238 7 C -0.111 4.111 8 N -0.110 5.110 9 C -0.024 4.024 10 C 0.206 3.794 11 O -0.513 6.513 12 N -0.193 5.193 13 C -0.467 4.467 14 H 0.093 0.907 15 C -0.204 4.204 16 N -0.551 5.551 17 Si 0.813 3.187 18 H -0.199 1.199 19 H -0.191 1.191 20 H -0.198 1.198 21 C -0.139 4.139 22 C -0.074 4.074 23 C -0.096 4.096 24 H 0.069 0.931 25 C -0.199 4.199 26 H 0.071 0.929 27 H 0.095 0.905 28 H 0.084 0.916 29 H 0.098 0.902 30 H 0.082 0.918 31 H 0.242 0.758 32 H 0.165 0.835 33 H 0.150 0.850 34 H 0.236 0.764 35 H 0.091 0.909 36 H 0.068 0.932 37 H 0.112 0.888 38 H 0.097 0.903 39 H 0.066 0.934 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.170 10.265 -4.429 15.804 hybrid contribution 1.270 -0.880 1.246 1.985 sum -9.900 9.385 -3.182 14.008 Atomic orbital electron populations 1.21877 0.92915 1.02237 1.03013 1.21148 0.96957 0.99148 0.92110 0.90328 1.20025 0.86258 1.00585 0.99230 1.20928 0.97316 1.08694 0.88914 1.69892 0.99802 1.20606 1.33550 1.25403 0.99187 1.05416 0.81115 1.44678 1.07174 1.50543 1.08622 1.21673 0.91322 0.95887 0.93526 1.20839 0.83828 0.90901 0.83857 1.90586 1.45299 1.48384 1.67039 1.41798 1.29238 1.13718 1.34520 1.19557 1.16283 0.90982 1.19886 0.90653 1.25972 0.94685 1.02746 0.96999 1.69634 1.18490 1.34369 1.32601 0.85046 0.78240 0.77404 0.78040 1.19869 1.19121 1.19811 1.21298 0.83889 1.09684 0.99077 1.20194 0.95583 1.01671 0.89932 1.21116 0.92080 0.99746 0.96687 0.93078 1.21874 1.01112 1.01455 0.95504 0.92864 0.90548 0.91648 0.90168 0.91758 0.75832 0.83466 0.85002 0.76404 0.90948 0.93229 0.88757 0.90348 0.93413 0.91157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 8.53 71.98 0.61 -1.63 16 2 C -0.07 -1.58 2.34 -10.64 -0.02 -1.61 16 3 H 0.08 1.58 8.11 -2.39 -0.02 1.56 16 4 C -0.02 -0.62 5.60 30.02 0.17 -0.45 16 5 C -0.03 -1.03 6.98 41.60 0.29 -0.74 16 6 N -0.52 -19.68 11.25 -187.89 -2.11 -21.80 16 7 C 0.17 5.89 12.57 180.10 2.26 8.15 16 8 N -0.43 -14.97 2.23 -518.57 -1.16 -16.13 16 9 C 0.10 3.23 6.48 85.63 0.55 3.78 16 10 C 0.42 18.93 7.85 87.66 0.69 19.62 16 11 O -0.63 -34.71 16.00 -3.06 -0.05 -34.76 16 12 N -0.56 -26.71 5.29 -306.99 -1.62 -28.33 16 13 C -0.34 -18.45 9.68 84.04 0.81 -17.64 16 14 H 0.08 4.48 7.16 -2.91 -0.02 4.46 16 15 C 0.00 -0.14 5.50 84.93 0.47 0.33 16 16 N -0.91 -46.58 13.05 21.66 0.28 -46.30 16 17 Si 0.99 41.51 29.55 68.60 2.03 43.54 16 18 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 19 H -0.27 -10.46 7.11 99.48 0.71 -9.76 16 20 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 21 C -0.02 -0.82 6.73 41.14 0.28 -0.54 16 22 C -0.04 -1.03 5.36 29.97 0.16 -0.87 16 23 C -0.08 -1.88 2.35 -10.62 -0.02 -1.91 16 24 H 0.05 1.48 8.12 -2.39 -0.02 1.46 16 25 C -0.14 -2.62 8.53 71.98 0.61 -2.01 16 26 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.08 0.97 6.31 -2.39 -0.02 0.95 16 28 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.06 1.79 8.12 -2.39 -0.02 1.77 16 31 H 0.23 6.11 8.06 -2.91 -0.02 6.08 16 32 H 0.15 3.55 8.13 -2.39 -0.02 3.53 16 33 H 0.13 3.44 8.11 -2.39 -0.02 3.42 16 34 H 0.40 17.77 7.90 -92.71 -0.73 17.04 16 35 H 0.28 13.48 8.31 -92.70 -0.77 12.71 16 36 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.09 2.25 8.12 -2.39 -0.02 2.24 16 38 H 0.08 1.18 6.31 -2.39 -0.02 1.17 16 39 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 Total: -1.00 -71.30 328.81 4.54 -66.76 By element: Atomic # 1 Polarization: 32.22 SS G_CDS: 0.31 Total: 32.53 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: 6.86 Total: 4.49 kcal Atomic # 7 Polarization: -107.94 SS G_CDS: -4.61 Total: -112.55 kcal Atomic # 8 Polarization: -34.71 SS G_CDS: -0.05 Total: -34.76 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.54 kcal Total: -71.30 4.54 -66.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335917795.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.779 kcal (2) G-P(sol) polarization free energy of solvation -71.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds