Wall clock time and date at job start Mon Mar 30 2020 20:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.47112 * 2 1 4 4 C 1.50698 * 109.47107 * 239.99892 * 2 1 3 5 5 C 1.38270 * 119.98728 * 286.32974 * 4 2 1 6 6 C 1.38228 * 120.04956 * 179.72772 * 5 4 2 7 7 C 1.38219 * 120.02648 * 0.54459 * 6 5 4 8 8 C 1.38442 * 119.97161 * 359.72856 * 7 6 5 9 9 F 1.35099 * 120.02437 * 180.02562 * 8 7 6 10 10 C 1.38180 * 119.98859 * 106.60449 * 4 2 1 11 11 N 1.46903 * 109.46951 * 119.99705 * 2 1 3 12 12 C 1.46843 * 111.00029 * 300.47050 * 11 2 1 13 13 C 1.53041 * 109.52297 * 174.16159 * 12 11 2 14 14 C 1.53123 * 109.27691 * 59.17858 * 13 12 11 15 15 C 1.50697 * 109.51886 * 182.44327 * 14 13 12 16 16 H 1.08009 * 120.00124 * 119.68560 * 15 14 13 17 17 C 1.37878 * 119.99947 * 299.67954 * 15 14 13 18 18 N 1.31509 * 120.00364 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99742 * 180.02562 * 17 15 14 20 20 H 1.48492 * 109.47162 * 60.00362 * 19 17 15 21 21 H 1.48506 * 109.46770 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47129 * 299.99990 * 19 17 15 23 23 C 1.53124 * 109.15916 * 302.34647 * 14 13 12 24 24 C 1.46845 * 110.99599 * 176.25752 * 11 2 1 25 25 H 1.09000 * 109.46797 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47061 * 300.00054 * 1 2 3 27 27 H 1.08997 * 109.46611 * 60.00418 * 1 2 3 28 28 H 1.07994 * 119.97305 * 359.97438 * 5 4 2 29 29 H 1.07999 * 119.98429 * 180.26804 * 6 5 4 30 30 H 1.07995 * 120.01379 * 179.74553 * 7 6 5 31 31 H 1.08002 * 120.00663 * 359.97438 * 10 4 2 32 32 H 1.08998 * 109.46409 * 294.17541 * 12 11 2 33 33 H 1.09004 * 109.46401 * 54.14474 * 12 11 2 34 34 H 1.09005 * 109.50061 * 299.24036 * 13 12 11 35 35 H 1.09000 * 109.50206 * 179.11949 * 13 12 11 36 36 H 1.08999 * 109.51946 * 62.25204 * 14 13 12 37 37 H 0.96991 * 120.00391 * 180.02562 * 18 17 15 38 38 H 1.08995 * 109.50125 * 297.71115 * 23 14 13 39 39 H 1.09008 * 109.49869 * 177.59750 * 23 14 13 40 40 H 1.08994 * 109.46539 * 305.85882 * 24 11 2 41 41 H 1.09004 * 109.46490 * 65.82911 * 24 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 6 1.9453 -2.0876 -1.3172 6 6 2.4005 -2.7401 -2.4476 7 6 2.9536 -2.0173 -3.4878 8 6 3.0465 -0.6389 -3.3996 9 9 3.5865 0.0687 -4.4159 10 6 2.5851 0.0142 -2.2691 11 7 2.0197 -0.6925 1.1995 12 6 1.5397 -0.0331 2.4206 13 6 1.9456 -0.8608 3.6422 14 6 3.4706 -0.9949 3.6779 15 6 3.8728 -1.8592 4.8450 16 1 4.4156 -2.7774 4.6752 17 6 3.5480 -1.4778 6.1295 18 7 2.8868 -0.3600 6.3363 19 14 4.0473 -2.5489 7.5763 20 1 5.5258 -2.6839 7.6052 21 1 3.5822 -1.9222 8.8398 22 1 3.4302 -3.8920 7.4340 23 6 3.9489 -1.6403 2.3743 24 6 3.4849 -0.7900 1.1895 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 1.5176 -2.6536 -0.5029 29 1 2.3280 -3.8155 -2.5161 30 1 3.3130 -2.5277 -4.3691 31 1 2.6566 1.0896 -2.1993 32 1 1.9798 0.9615 2.4933 33 1 0.4536 0.0523 2.3843 34 1 1.4946 -1.8510 3.5770 35 1 1.6028 -0.3630 4.5493 36 1 3.9206 -0.0077 3.7822 37 1 2.6586 -0.0915 7.2399 38 1 3.5295 -2.6427 2.2892 39 1 5.0374 -1.6995 2.3756 40 1 3.8116 -1.2544 0.2591 41 1 3.9159 0.2081 1.2680 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335978622.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:20:52 Heat of formation + Delta-G solvation = -28.726307 kcal Electronic energy + Delta-G solvation = -21712.459802 eV Core-core repulsion = 18505.968584 eV Total energy + Delta-G solvation = -3206.491218 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.92810 -39.75949 -37.85595 -34.71940 -32.40143 -30.88201 -30.39489 -29.69694 -28.70131 -25.56648 -23.80765 -22.77717 -22.05140 -21.63592 -20.08637 -18.59860 -17.24224 -16.56850 -16.28259 -16.11367 -15.64480 -15.23794 -14.62314 -14.46797 -14.16454 -13.73105 -13.30933 -13.11288 -12.81834 -12.65675 -12.56473 -12.31133 -12.06868 -11.76667 -11.61078 -11.29763 -11.18585 -10.89002 -10.78873 -10.66967 -10.44957 -10.19523 -9.96832 -9.41126 -9.02136 -8.94297 -8.70282 -8.58499 -8.27844 -7.79243 -5.96029 -4.01215 1.15448 1.18471 3.33588 3.38097 3.41019 3.56734 4.10594 4.39110 4.46513 4.61833 4.80600 5.00145 5.26769 5.31581 5.33900 5.35106 5.41249 5.62587 5.73953 5.86802 5.88751 5.99557 6.03579 6.07688 6.12893 6.21463 6.27352 6.34069 6.35413 6.55968 6.63632 6.65796 6.87136 6.88910 7.09130 7.16965 7.44085 7.61693 7.67797 7.83555 8.06257 8.16934 8.49876 9.02234 9.63104 11.10143 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031297 B = 0.003970 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.451338 B = 7050.457597 C = 7398.394414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.114 3.886 3 H 0.044 0.956 4 C -0.039 4.039 5 C -0.098 4.098 6 C -0.096 4.096 7 C -0.160 4.160 8 C 0.091 3.909 9 F -0.145 7.145 10 C -0.154 4.154 11 N -0.525 5.525 12 C 0.054 3.946 13 C -0.103 4.103 14 C 0.048 3.952 15 C -0.510 4.510 16 H 0.053 0.947 17 C 0.061 3.939 18 N -0.893 5.893 19 Si 0.889 3.111 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.278 1.278 23 C -0.104 4.104 24 C 0.059 3.941 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.055 0.945 28 H 0.140 0.860 29 H 0.131 0.869 30 H 0.130 0.870 31 H 0.130 0.870 32 H 0.022 0.978 33 H 0.061 0.939 34 H 0.043 0.957 35 H 0.092 0.908 36 H 0.019 0.981 37 H 0.259 0.741 38 H 0.056 0.944 39 H 0.048 0.952 40 H 0.059 0.941 41 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.876 -0.435 -16.769 17.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.006 3.994 3 H 0.062 0.938 4 C -0.040 4.040 5 C -0.117 4.117 6 C -0.114 4.114 7 C -0.179 4.179 8 C 0.072 3.928 9 F -0.124 7.124 10 C -0.173 4.173 11 N -0.251 5.251 12 C -0.073 4.073 13 C -0.141 4.141 14 C 0.029 3.971 15 C -0.549 4.549 16 H 0.072 0.928 17 C -0.139 4.139 18 N -0.532 5.532 19 Si 0.717 3.283 20 H -0.204 1.204 21 H -0.214 1.214 22 H -0.203 1.203 23 C -0.142 4.142 24 C -0.069 4.069 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.157 0.843 29 H 0.149 0.851 30 H 0.148 0.852 31 H 0.148 0.852 32 H 0.040 0.960 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.110 0.890 36 H 0.038 0.962 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.078 0.922 41 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -4.120 -0.761 -16.643 17.162 hybrid contribution 0.786 0.480 0.607 1.103 sum -3.334 -0.281 -16.036 16.382 Atomic orbital electron populations 1.21872 0.93420 1.02881 1.01630 1.20566 0.95746 0.94779 0.88346 0.93842 1.19706 0.95930 0.94019 0.94333 1.21209 0.98827 0.93949 0.97684 1.21059 0.97355 1.00136 0.92808 1.21099 1.03624 0.92145 1.01067 1.17625 0.99288 0.89868 0.86015 1.91477 1.83853 1.78815 1.58221 1.21020 1.02142 1.00764 0.93358 1.62099 1.10669 1.51439 1.00866 1.22361 0.98558 0.96006 0.90335 1.21658 0.99264 0.98202 0.94967 1.18682 0.92011 0.95731 0.90643 1.21175 1.35482 1.07243 0.90958 0.92849 1.24956 0.95159 0.95062 0.98761 1.69857 1.39934 1.22354 1.21041 0.86707 0.78895 0.80752 0.81913 1.20401 1.21390 1.20319 1.21662 0.98721 0.98870 0.94972 1.22148 0.86644 0.98644 0.99447 0.91521 0.91660 0.92637 0.84255 0.85122 0.85201 0.85190 0.95967 0.92035 0.93797 0.88958 0.96242 0.93070 0.92511 0.93328 0.92231 0.95989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 8.88 37.16 0.33 -1.37 16 2 C 0.11 1.59 2.28 -68.86 -0.16 1.43 16 3 H 0.04 0.62 7.94 -51.93 -0.41 0.21 16 4 C -0.04 -0.51 3.48 -104.63 -0.36 -0.87 16 5 C -0.10 -1.22 8.45 -39.57 -0.33 -1.55 16 6 C -0.10 -1.02 10.04 -39.59 -0.40 -1.42 16 7 C -0.16 -1.75 10.03 -39.51 -0.40 -2.15 16 8 C 0.09 1.13 7.30 -39.42 -0.29 0.84 16 9 F -0.14 -1.85 17.27 2.25 0.04 -1.81 16 10 C -0.15 -1.92 9.65 -39.52 -0.38 -2.30 16 11 N -0.53 -8.82 4.05 -228.08 -0.92 -9.74 16 12 C 0.05 1.02 5.21 -3.83 -0.02 1.00 16 13 C -0.10 -2.36 5.12 -26.65 -0.14 -2.49 16 14 C 0.05 1.18 2.16 -91.65 -0.20 0.98 16 15 C -0.51 -13.92 8.56 -34.44 -0.29 -14.22 16 16 H 0.05 1.44 7.75 -52.48 -0.41 1.04 16 17 C 0.06 1.69 5.31 -17.82 -0.09 1.59 16 18 N -0.89 -25.23 11.37 55.43 0.63 -24.60 16 19 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 C -0.10 -2.18 5.32 -26.65 -0.14 -2.32 16 24 C 0.06 1.05 5.14 -3.84 -0.02 1.03 16 25 H 0.07 0.81 8.07 -51.93 -0.42 0.39 16 26 H 0.06 0.80 6.27 -51.93 -0.33 0.47 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.14 1.78 7.91 -52.49 -0.42 1.37 16 29 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 30 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 31 H 0.13 1.48 7.99 -52.49 -0.42 1.06 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 1.04 5.99 -51.93 -0.31 0.73 16 34 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.09 2.37 6.17 -51.93 -0.32 2.05 16 36 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.05 1.00 8.14 -51.92 -0.42 0.57 16 40 H 0.06 0.99 6.27 -51.93 -0.33 0.67 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 326.25 15.07 4.92 4.92 Total: -1.00 -27.81 326.25 -9.55 -37.35 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -6.29 Total: -0.48 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: -2.89 Total: -21.82 kcal Atomic # 7 Polarization: -34.05 SS G_CDS: -0.29 Total: -34.34 kcal Atomic # 9 Polarization: -1.85 SS G_CDS: 0.04 Total: -1.81 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -27.81 -9.55 -37.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335978622.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.627 kcal (2) G-P(sol) polarization free energy of solvation -27.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds