Wall clock time and date at job start Mon Mar 30 2020 20:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.47112 * 2 1 4 4 C 1.50698 * 109.47107 * 239.99892 * 2 1 3 5 5 C 1.38270 * 119.98728 * 286.32974 * 4 2 1 6 6 C 1.38228 * 120.04956 * 179.72772 * 5 4 2 7 7 C 1.38219 * 120.02648 * 0.54459 * 6 5 4 8 8 C 1.38442 * 119.97161 * 359.72856 * 7 6 5 9 9 F 1.35099 * 120.02437 * 180.02562 * 8 7 6 10 10 C 1.38180 * 119.98859 * 106.60449 * 4 2 1 11 11 N 1.46903 * 109.46951 * 119.99705 * 2 1 3 12 12 C 1.46843 * 111.00029 * 300.47050 * 11 2 1 13 13 C 1.53041 * 109.52297 * 174.16159 * 12 11 2 14 14 C 1.53123 * 109.27691 * 59.17858 * 13 12 11 15 15 C 1.50697 * 109.51886 * 182.44327 * 14 13 12 16 16 H 1.08009 * 120.00124 * 119.68560 * 15 14 13 17 17 C 1.37878 * 119.99947 * 299.67954 * 15 14 13 18 18 N 1.31509 * 120.00364 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99742 * 180.02562 * 17 15 14 20 20 H 1.48492 * 109.47162 * 60.00362 * 19 17 15 21 21 H 1.48506 * 109.46770 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47129 * 299.99990 * 19 17 15 23 23 C 1.53124 * 109.15916 * 302.34647 * 14 13 12 24 24 C 1.46845 * 110.99599 * 176.25752 * 11 2 1 25 25 H 1.09000 * 109.46797 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47061 * 300.00054 * 1 2 3 27 27 H 1.08997 * 109.46611 * 60.00418 * 1 2 3 28 28 H 1.07994 * 119.97305 * 359.97438 * 5 4 2 29 29 H 1.07999 * 119.98429 * 180.26804 * 6 5 4 30 30 H 1.07995 * 120.01379 * 179.74553 * 7 6 5 31 31 H 1.08002 * 120.00663 * 359.97438 * 10 4 2 32 32 H 1.08998 * 109.46409 * 294.17541 * 12 11 2 33 33 H 1.09004 * 109.46401 * 54.14474 * 12 11 2 34 34 H 1.09005 * 109.50061 * 299.24036 * 13 12 11 35 35 H 1.09000 * 109.50206 * 179.11949 * 13 12 11 36 36 H 1.08999 * 109.51946 * 62.25204 * 14 13 12 37 37 H 0.96991 * 120.00391 * 180.02562 * 18 17 15 38 38 H 1.08995 * 109.50125 * 297.71115 * 23 14 13 39 39 H 1.09008 * 109.49869 * 177.59750 * 23 14 13 40 40 H 1.08994 * 109.46539 * 305.85882 * 24 11 2 41 41 H 1.09004 * 109.46490 * 65.82911 * 24 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 6 1.9453 -2.0876 -1.3172 6 6 2.4005 -2.7401 -2.4476 7 6 2.9536 -2.0173 -3.4878 8 6 3.0465 -0.6389 -3.3996 9 9 3.5865 0.0687 -4.4159 10 6 2.5851 0.0142 -2.2691 11 7 2.0197 -0.6925 1.1995 12 6 1.5397 -0.0331 2.4206 13 6 1.9456 -0.8608 3.6422 14 6 3.4706 -0.9949 3.6779 15 6 3.8728 -1.8592 4.8450 16 1 4.4156 -2.7774 4.6752 17 6 3.5480 -1.4778 6.1295 18 7 2.8868 -0.3600 6.3363 19 14 4.0473 -2.5489 7.5763 20 1 5.5258 -2.6839 7.6052 21 1 3.5822 -1.9222 8.8398 22 1 3.4302 -3.8920 7.4340 23 6 3.9489 -1.6403 2.3743 24 6 3.4849 -0.7900 1.1895 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 1.5176 -2.6536 -0.5029 29 1 2.3280 -3.8155 -2.5161 30 1 3.3130 -2.5277 -4.3691 31 1 2.6566 1.0896 -2.1993 32 1 1.9798 0.9615 2.4933 33 1 0.4536 0.0523 2.3843 34 1 1.4946 -1.8510 3.5770 35 1 1.6028 -0.3630 4.5493 36 1 3.9206 -0.0077 3.7822 37 1 2.6586 -0.0915 7.2399 38 1 3.5295 -2.6427 2.2892 39 1 5.0374 -1.6995 2.3756 40 1 3.8116 -1.2544 0.2591 41 1 3.9159 0.2081 1.2680 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335978622.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:20:51 Heat of formation + Delta-G solvation = -42.160769 kcal Electronic energy + Delta-G solvation = -21713.042364 eV Core-core repulsion = 18505.968584 eV Total energy + Delta-G solvation = -3207.073780 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.87163 -40.88408 -39.17578 -36.27002 -34.13662 -32.13216 -31.58217 -31.21715 -29.87101 -27.38644 -25.04508 -23.73319 -23.66186 -23.10255 -21.26207 -20.32711 -18.44866 -18.21379 -17.49452 -17.04065 -16.72991 -16.57180 -16.25849 -15.76688 -15.48239 -14.90755 -14.63918 -14.44910 -14.33390 -14.28557 -13.88448 -13.51712 -13.33883 -13.06281 -12.82888 -12.67219 -12.52783 -12.49489 -12.37503 -12.14897 -11.98568 -11.85508 -11.69102 -11.28665 -10.78192 -10.61883 -10.35014 -9.89612 -9.54769 -9.20155 -8.05987 -6.19160 0.24010 0.28492 1.43021 1.43930 1.51486 2.45397 2.63684 2.97211 3.20973 3.30987 3.66339 3.90557 4.12896 4.21277 4.25484 4.26092 4.33633 4.40808 4.48513 4.50203 4.62627 4.75963 4.79901 4.85448 4.96798 4.97235 5.02609 5.15132 5.15663 5.19220 5.25394 5.31569 5.38042 5.46325 5.58876 5.60976 5.67417 5.98675 6.03303 6.05385 6.31531 6.33721 6.43198 6.92100 7.48511 8.98348 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031297 B = 0.003970 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.451338 B = 7050.457597 C = 7398.394414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.115 3.885 3 H 0.042 0.958 4 C -0.050 4.050 5 C -0.106 4.106 6 C -0.090 4.090 7 C -0.155 4.155 8 C 0.078 3.922 9 F -0.150 7.150 10 C -0.159 4.159 11 N -0.524 5.524 12 C 0.066 3.934 13 C -0.093 4.093 14 C 0.044 3.956 15 C -0.533 4.533 16 H 0.050 0.950 17 C 0.014 3.986 18 N -0.917 5.917 19 Si 0.951 3.049 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.271 1.271 23 C -0.096 4.096 24 C 0.069 3.931 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.074 0.926 28 H 0.134 0.866 29 H 0.158 0.842 30 H 0.153 0.847 31 H 0.135 0.865 32 H 0.011 0.989 33 H 0.084 0.916 34 H 0.034 0.966 35 H 0.061 0.939 36 H -0.016 1.016 37 H 0.260 0.740 38 H 0.055 0.945 39 H 0.047 0.953 40 H 0.079 0.921 41 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.171 -1.557 -18.285 18.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.007 3.993 3 H 0.060 0.940 4 C -0.050 4.050 5 C -0.125 4.125 6 C -0.107 4.107 7 C -0.174 4.174 8 C 0.058 3.942 9 F -0.129 7.129 10 C -0.178 4.178 11 N -0.249 5.249 12 C -0.061 4.061 13 C -0.131 4.131 14 C 0.026 3.974 15 C -0.572 4.572 16 H 0.068 0.932 17 C -0.184 4.184 18 N -0.557 5.557 19 Si 0.777 3.223 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.196 1.196 23 C -0.134 4.134 24 C -0.058 4.058 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.093 0.907 28 H 0.152 0.848 29 H 0.175 0.825 30 H 0.171 0.829 31 H 0.153 0.847 32 H 0.029 0.971 33 H 0.102 0.898 34 H 0.053 0.947 35 H 0.079 0.921 36 H 0.002 0.998 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.097 0.903 41 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges -4.415 -1.885 -18.177 18.800 hybrid contribution 0.893 0.826 1.034 1.596 sum -3.522 -1.059 -17.143 17.533 Atomic orbital electron populations 1.21851 0.91899 1.03189 1.02426 1.20625 0.96942 0.94450 0.87272 0.94005 1.19584 0.97053 0.94349 0.94045 1.21274 0.99204 0.93707 0.98301 1.21334 0.96114 1.01470 0.91829 1.21396 1.02584 0.91597 1.01811 1.17819 0.99793 0.90580 0.85961 1.91465 1.83996 1.79053 1.58380 1.21085 1.02128 1.01181 0.93434 1.62032 1.09812 1.51794 1.01238 1.22125 0.99820 0.94496 0.89675 1.21400 0.97940 0.97925 0.95839 1.18661 0.93000 0.93754 0.92031 1.21554 1.35708 1.07552 0.92340 0.93164 1.25709 0.95146 0.96268 1.01325 1.70000 1.40578 1.23643 1.21477 0.85719 0.78645 0.79229 0.78695 1.19906 1.21004 1.19600 1.21514 0.98657 0.98915 0.94327 1.21989 0.87459 0.97631 0.98754 0.91428 0.91957 0.90741 0.84769 0.82459 0.82939 0.84693 0.97069 0.89799 0.94709 0.92086 0.99776 0.93118 0.92621 0.93418 0.90280 0.96900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 8.88 71.98 0.64 -2.38 16 2 C 0.12 3.02 2.28 44.17 0.10 3.12 16 3 H 0.04 1.13 7.94 -2.39 -0.02 1.11 16 4 C -0.05 -1.19 3.48 -19.87 -0.07 -1.26 16 5 C -0.11 -2.38 8.45 22.27 0.19 -2.19 16 6 C -0.09 -1.64 10.04 22.26 0.22 -1.41 16 7 C -0.16 -2.92 10.03 22.31 0.22 -2.69 16 8 C 0.08 1.75 7.30 22.38 0.16 1.91 16 9 F -0.15 -3.58 17.27 44.97 0.78 -2.80 16 10 C -0.16 -3.68 9.65 22.31 0.22 -3.47 16 11 N -0.52 -17.10 4.05 -875.51 -3.55 -20.65 16 12 C 0.07 2.48 5.21 86.33 0.45 2.93 16 13 C -0.09 -4.36 5.12 30.65 0.16 -4.20 16 14 C 0.04 2.23 2.16 -11.46 -0.02 2.21 16 15 C -0.53 -29.72 8.56 25.60 0.22 -29.50 16 16 H 0.05 2.75 7.75 -2.91 -0.02 2.73 16 17 C 0.01 0.78 5.31 84.66 0.45 1.23 16 18 N -0.92 -53.12 11.37 21.45 0.24 -52.87 16 19 Si 0.95 43.79 29.54 68.60 2.03 45.82 16 20 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 21 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 22 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 23 C -0.10 -4.03 5.32 30.65 0.16 -3.87 16 24 C 0.07 2.44 5.14 86.33 0.44 2.89 16 25 H 0.07 1.49 8.07 -2.39 -0.02 1.47 16 26 H 0.06 1.41 6.27 -2.39 -0.01 1.39 16 27 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.13 3.15 7.91 -2.91 -0.02 3.13 16 29 H 0.16 2.00 8.06 -2.91 -0.02 1.98 16 30 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 31 H 0.14 2.89 7.99 -2.91 -0.02 2.86 16 32 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.08 2.77 5.99 -2.39 -0.01 2.75 16 34 H 0.03 1.65 8.14 -2.38 -0.02 1.63 16 35 H 0.06 3.25 6.17 -2.39 -0.01 3.24 16 36 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 37 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 38 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 39 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 40 H 0.08 2.50 6.27 -2.39 -0.01 2.49 16 41 H 0.01 0.47 8.14 -2.38 -0.02 0.46 16 Total: -1.00 -60.33 326.25 4.04 -56.29 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: 1.00 Total: 10.90 kcal Atomic # 6 Polarization: -40.23 SS G_CDS: 3.54 Total: -36.69 kcal Atomic # 7 Polarization: -70.21 SS G_CDS: -3.30 Total: -73.52 kcal Atomic # 9 Polarization: -3.58 SS G_CDS: 0.78 Total: -2.80 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -60.33 4.04 -56.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335978622.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.126 kcal (2) G-P(sol) polarization free energy of solvation -60.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds