Wall clock time and date at job start Mon Mar 30 2020 20:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 110.43213 * 2 1 4 4 C 1.54265 * 110.48514 * 237.31984 * 2 1 3 5 5 C 1.53877 * 106.59605 * 217.71057 * 4 2 1 6 6 C 1.54463 * 106.68421 * 0.15594 * 5 4 2 7 7 H 1.09003 * 110.40626 * 264.75463 * 6 5 4 8 8 C 1.50709 * 110.65945 * 142.05352 * 6 5 4 9 9 O 1.21588 * 120.00030 * 245.23903 * 8 6 5 10 10 N 1.32903 * 119.99886 * 65.24028 * 8 6 5 11 11 C 1.33301 * 120.00082 * 179.97438 * 10 8 6 12 12 C 1.40987 * 126.35585 * 359.69084 * 11 10 8 13 13 C 1.35130 * 108.23882 * 179.86140 * 12 11 10 14 14 N 1.36334 * 108.89667 * 0.40245 * 13 12 11 15 15 C 1.46504 * 125.85886 * 179.78162 * 14 13 12 16 16 C 1.50700 * 109.47262 * 274.95603 * 15 14 13 17 17 H 1.07994 * 119.99862 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00171 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99737 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00048 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47218 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.46942 * 119.99913 * 20 18 16 23 23 H 1.48499 * 109.46753 * 239.99684 * 20 18 16 24 24 N 1.37288 * 126.36134 * 179.97438 * 11 10 8 25 25 H 0.97003 * 126.34063 * 359.97438 * 24 11 10 26 26 C 1.54887 * 110.48663 * 122.53966 * 2 1 3 27 27 H 1.09003 * 109.46875 * 297.45693 * 1 2 3 28 28 H 1.09002 * 109.47508 * 57.45561 * 1 2 3 29 29 H 1.09000 * 109.47112 * 177.45744 * 1 2 3 30 30 H 1.08995 * 110.03137 * 336.98981 * 4 2 1 31 31 H 1.08993 * 110.03408 * 98.42715 * 4 2 1 32 32 H 1.08999 * 110.03493 * 119.28247 * 5 4 2 33 33 H 1.08997 * 110.03317 * 240.71381 * 5 4 2 34 34 H 1.07996 * 125.87992 * 0.02562 * 12 11 10 35 35 H 1.07995 * 125.54892 * 180.14771 * 13 12 11 36 36 H 1.08998 * 109.47102 * 34.96164 * 15 14 13 37 37 H 1.09005 * 109.46522 * 154.95772 * 15 14 13 38 38 H 0.96998 * 119.99947 * 180.02562 * 19 18 16 39 39 H 1.09002 * 110.75856 * 274.93753 * 26 2 1 40 40 H 1.09006 * 110.75640 * 38.12739 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9105 1.0215 0.0000 4 6 2.0699 -0.7803 -1.2163 5 6 3.3165 -1.5414 -0.7322 6 6 3.4905 -1.2010 0.7644 7 1 4.1917 -0.3756 0.8875 8 6 3.9568 -2.4100 1.5339 9 8 3.2372 -2.9081 2.3781 10 7 5.1545 -2.9318 1.2898 11 6 5.5672 -4.0008 1.9708 12 6 4.8498 -4.6785 2.9777 13 6 5.6074 -5.7076 3.4171 14 7 6.7879 -5.7094 2.7351 15 6 7.8845 -6.6631 2.9203 16 6 8.7648 -6.2026 4.0536 17 1 8.5305 -5.2910 4.5831 18 6 9.8691 -6.9451 4.4143 19 7 10.1540 -8.0555 3.7697 20 14 10.9598 -6.3746 5.8194 21 1 10.4262 -5.1058 6.3764 22 1 10.9812 -7.4119 6.8818 23 1 12.3392 -6.1526 5.3164 24 7 6.7718 -4.6432 1.8257 25 1 7.4804 -4.4033 1.2082 26 6 2.0721 -0.7804 1.2231 27 1 -0.3633 0.4739 0.9119 28 1 -0.3634 0.5528 -0.8663 29 1 -0.3633 -1.0267 -0.0456 30 1 1.3176 -1.4841 -1.5722 31 1 2.3411 -0.0882 -2.0135 32 1 3.1693 -2.6146 -0.8531 33 1 4.1928 -1.2186 -1.2944 34 1 3.8634 -4.4212 3.3345 35 1 5.3254 -6.4113 4.1862 36 1 7.4756 -7.6460 3.1541 37 1 8.4727 -6.7227 2.0045 38 1 10.9308 -8.5780 4.0236 39 1 2.1251 -0.1355 2.1003 40 1 1.4562 -1.6566 1.4263 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345297098.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:21:13 Heat of formation + Delta-G solvation = 41.018954 kcal Electronic energy + Delta-G solvation = -20820.483370 eV Core-core repulsion = 17636.936495 eV Total energy + Delta-G solvation = -3183.546875 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.87450 -39.18596 -37.18273 -34.25057 -32.94305 -31.50345 -31.09917 -30.50326 -28.69325 -26.88263 -25.25531 -23.35492 -22.14070 -21.33530 -20.60387 -19.74856 -18.54193 -17.12128 -16.74605 -16.02934 -15.53018 -15.24514 -14.85071 -14.76610 -14.19322 -13.91563 -13.44857 -13.35711 -13.12512 -12.91403 -12.78627 -12.52619 -12.11056 -12.00176 -11.38118 -11.36340 -11.10641 -10.88441 -10.77148 -10.60194 -10.55474 -10.49617 -10.37593 -10.26579 -9.58969 -9.19527 -9.04801 -8.95428 -8.29891 -6.98886 -6.53089 -4.69101 1.64312 2.04825 2.98690 3.02675 3.12383 3.17433 4.02958 4.22388 4.33134 4.65419 4.76354 4.78188 4.81077 5.15342 5.22513 5.37504 5.47618 5.57896 5.67453 5.71894 5.78530 5.81906 5.91362 5.96390 6.01675 6.07576 6.15183 6.18247 6.40983 6.45308 6.47944 6.51669 6.56462 6.65707 6.74066 7.34725 7.44904 7.48428 7.60992 7.95311 8.34491 8.41225 9.01842 9.41966 10.49387 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.045443 B = 0.002967 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.008674 B = 9434.720289 C = 9492.404340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.100 4.100 3 H 0.071 0.929 4 C -0.120 4.120 5 C -0.100 4.100 6 C -0.086 4.086 7 H 0.088 0.912 8 C 0.500 3.500 9 O -0.587 6.587 10 N -0.701 5.701 11 C 0.468 3.532 12 C -0.333 4.333 13 C 0.162 3.838 14 N -0.340 5.340 15 C 0.253 3.747 16 C -0.558 4.558 17 H 0.070 0.930 18 C 0.070 3.930 19 N -0.886 5.886 20 Si 0.910 3.090 21 H -0.269 1.269 22 H -0.278 1.278 23 H -0.279 1.279 24 N -0.466 5.466 25 H 0.445 0.555 26 C -0.102 4.102 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.184 0.816 35 H 0.188 0.812 36 H 0.069 0.931 37 H 0.052 0.948 38 H 0.272 0.728 39 H 0.062 0.938 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.778 8.316 -6.044 14.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.118 4.118 3 H 0.089 0.911 4 C -0.158 4.158 5 C -0.138 4.138 6 C -0.107 4.107 7 H 0.107 0.893 8 C 0.286 3.714 9 O -0.470 6.470 10 N -0.465 5.465 11 C 0.219 3.781 12 C -0.366 4.366 13 C 0.016 3.984 14 N -0.125 5.125 15 C 0.137 3.863 16 C -0.596 4.596 17 H 0.089 0.911 18 C -0.135 4.135 19 N -0.523 5.523 20 Si 0.736 3.264 21 H -0.194 1.194 22 H -0.204 1.204 23 H -0.205 1.205 24 N -0.188 5.188 25 H 0.292 0.708 26 C -0.140 4.140 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.200 0.800 35 H 0.205 0.795 36 H 0.087 0.913 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.223 8.103 -6.275 14.476 hybrid contribution 0.863 0.018 0.888 1.239 sum -9.360 8.120 -5.386 13.512 Atomic orbital electron populations 1.21790 0.95252 1.01739 1.01189 1.21987 0.95293 0.99118 0.95424 0.91056 1.22243 0.97481 0.98688 0.97376 1.21938 0.97465 1.00302 0.94129 1.21706 0.97120 0.96603 0.95263 0.89331 1.20653 0.83347 0.85559 0.81885 1.90508 1.59292 1.62320 1.34870 1.68787 1.22113 1.17010 1.38568 1.19302 0.82581 0.88033 0.88230 1.22481 1.05702 1.01668 1.06703 1.22892 0.83765 0.98021 0.93721 1.48055 1.17157 1.19779 1.27513 1.20096 0.81924 0.85189 0.99120 1.21438 1.10502 1.10569 1.17120 0.91148 1.24962 0.97076 0.94434 0.97065 1.69905 1.27853 1.14157 1.40371 0.86230 0.79901 0.79083 0.81147 1.19371 1.20359 1.20490 1.44594 1.17689 1.22797 1.33755 0.70785 1.22447 0.95117 0.99967 0.96485 0.92807 0.93070 0.92620 0.91957 0.92138 0.91975 0.91440 0.79956 0.79470 0.91307 0.93007 0.91854 0.91916 0.90326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.14 37.16 0.34 -1.00 16 2 C -0.10 -1.08 3.46 -88.96 -0.31 -1.39 16 3 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 4 C -0.12 -1.31 6.37 -25.61 -0.16 -1.48 16 5 C -0.10 -1.34 6.37 -25.51 -0.16 -1.50 16 6 C -0.09 -1.31 3.34 -90.00 -0.30 -1.61 16 7 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 8 C 0.50 9.69 6.89 -11.81 -0.08 9.60 16 9 O -0.59 -12.52 12.62 5.29 0.07 -12.45 16 10 N -0.70 -13.88 10.49 -11.59 -0.12 -14.00 16 11 C 0.47 9.12 8.07 -155.18 -1.25 7.87 16 12 C -0.33 -6.23 9.51 -39.65 -0.38 -6.60 16 13 C 0.16 2.73 11.46 -16.66 -0.19 2.54 16 14 N -0.34 -6.28 3.63 -62.23 -0.23 -6.51 16 15 C 0.25 5.23 6.19 -5.19 -0.03 5.19 16 16 C -0.56 -13.20 9.39 -34.44 -0.32 -13.52 16 17 H 0.07 1.73 7.81 -52.49 -0.41 1.32 16 18 C 0.07 1.69 5.46 -17.82 -0.10 1.60 16 19 N -0.89 -22.38 13.29 55.43 0.74 -21.64 16 20 Si 0.91 19.18 29.54 -169.99 -5.02 14.16 16 21 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 22 H -0.28 -5.81 7.11 56.52 0.40 -5.40 16 23 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 24 N -0.47 -8.35 7.37 31.33 0.23 -8.11 16 25 H 0.45 7.02 8.96 -182.56 -1.64 5.38 16 26 C -0.10 -1.40 5.36 -24.74 -0.13 -1.53 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.54 8.08 -51.93 -0.42 0.12 16 30 H 0.06 0.66 7.79 -51.93 -0.40 0.25 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.92 7.83 -51.93 -0.41 0.51 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.18 3.57 5.77 -52.49 -0.30 3.27 16 35 H 0.19 2.47 8.06 -52.49 -0.42 2.05 16 36 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 37 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.08 1.21 7.37 -51.93 -0.38 0.82 16 LS Contribution 332.52 15.07 5.01 5.01 Total: -1.00 -28.06 332.52 -9.73 -37.79 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -7.33 Total: 7.60 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: -3.08 Total: -1.84 kcal Atomic # 7 Polarization: -50.88 SS G_CDS: 0.62 Total: -50.26 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: 0.07 Total: -12.45 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.02 Total: 14.16 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.06 -9.73 -37.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345297098.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.810 kcal (2) G-P(sol) polarization free energy of solvation -28.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds