Wall clock time and date at job start Mon Mar 30 2020 20:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 110.43213 * 2 1 4 4 C 1.54265 * 110.48514 * 237.31984 * 2 1 3 5 5 C 1.53877 * 106.59605 * 217.71057 * 4 2 1 6 6 C 1.54463 * 106.68421 * 0.15594 * 5 4 2 7 7 H 1.09003 * 110.40626 * 264.75463 * 6 5 4 8 8 C 1.50709 * 110.65945 * 142.05352 * 6 5 4 9 9 O 1.21588 * 120.00030 * 245.23903 * 8 6 5 10 10 N 1.32903 * 119.99886 * 65.24028 * 8 6 5 11 11 C 1.33301 * 120.00082 * 179.97438 * 10 8 6 12 12 C 1.40987 * 126.35585 * 359.69084 * 11 10 8 13 13 C 1.35130 * 108.23882 * 179.86140 * 12 11 10 14 14 N 1.36334 * 108.89667 * 0.40245 * 13 12 11 15 15 C 1.46504 * 125.85886 * 179.78162 * 14 13 12 16 16 C 1.50700 * 109.47262 * 274.95603 * 15 14 13 17 17 H 1.07994 * 119.99862 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00171 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99737 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00048 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47218 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.46942 * 119.99913 * 20 18 16 23 23 H 1.48499 * 109.46753 * 239.99684 * 20 18 16 24 24 N 1.37288 * 126.36134 * 179.97438 * 11 10 8 25 25 H 0.97003 * 126.34063 * 359.97438 * 24 11 10 26 26 C 1.54887 * 110.48663 * 122.53966 * 2 1 3 27 27 H 1.09003 * 109.46875 * 297.45693 * 1 2 3 28 28 H 1.09002 * 109.47508 * 57.45561 * 1 2 3 29 29 H 1.09000 * 109.47112 * 177.45744 * 1 2 3 30 30 H 1.08995 * 110.03137 * 336.98981 * 4 2 1 31 31 H 1.08993 * 110.03408 * 98.42715 * 4 2 1 32 32 H 1.08999 * 110.03493 * 119.28247 * 5 4 2 33 33 H 1.08997 * 110.03317 * 240.71381 * 5 4 2 34 34 H 1.07996 * 125.87992 * 0.02562 * 12 11 10 35 35 H 1.07995 * 125.54892 * 180.14771 * 13 12 11 36 36 H 1.08998 * 109.47102 * 34.96164 * 15 14 13 37 37 H 1.09005 * 109.46522 * 154.95772 * 15 14 13 38 38 H 0.96998 * 119.99947 * 180.02562 * 19 18 16 39 39 H 1.09002 * 110.75856 * 274.93753 * 26 2 1 40 40 H 1.09006 * 110.75640 * 38.12739 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9105 1.0215 0.0000 4 6 2.0699 -0.7803 -1.2163 5 6 3.3165 -1.5414 -0.7322 6 6 3.4905 -1.2010 0.7644 7 1 4.1917 -0.3756 0.8875 8 6 3.9568 -2.4100 1.5339 9 8 3.2372 -2.9081 2.3781 10 7 5.1545 -2.9318 1.2898 11 6 5.5672 -4.0008 1.9708 12 6 4.8498 -4.6785 2.9777 13 6 5.6074 -5.7076 3.4171 14 7 6.7879 -5.7094 2.7351 15 6 7.8845 -6.6631 2.9203 16 6 8.7648 -6.2026 4.0536 17 1 8.5305 -5.2910 4.5831 18 6 9.8691 -6.9451 4.4143 19 7 10.1540 -8.0555 3.7697 20 14 10.9598 -6.3746 5.8194 21 1 10.4262 -5.1058 6.3764 22 1 10.9812 -7.4119 6.8818 23 1 12.3392 -6.1526 5.3164 24 7 6.7718 -4.6432 1.8257 25 1 7.4804 -4.4033 1.2082 26 6 2.0721 -0.7804 1.2231 27 1 -0.3633 0.4739 0.9119 28 1 -0.3634 0.5528 -0.8663 29 1 -0.3633 -1.0267 -0.0456 30 1 1.3176 -1.4841 -1.5722 31 1 2.3411 -0.0882 -2.0135 32 1 3.1693 -2.6146 -0.8531 33 1 4.1928 -1.2186 -1.2944 34 1 3.8634 -4.4212 3.3345 35 1 5.3254 -6.4113 4.1862 36 1 7.4756 -7.6460 3.1541 37 1 8.4727 -6.7227 2.0045 38 1 10.9308 -8.5780 4.0236 39 1 2.1251 -0.1355 2.1003 40 1 1.4562 -1.6566 1.4263 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345297098.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:21:12 Heat of formation + Delta-G solvation = 25.483418 kcal Electronic energy + Delta-G solvation = -20821.157042 eV Core-core repulsion = 17636.936495 eV Total energy + Delta-G solvation = -3184.220547 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.35943 -40.50114 -38.38305 -35.93585 -34.60742 -32.70471 -32.55945 -31.92159 -29.75339 -28.51498 -26.35396 -24.93165 -23.52194 -22.76407 -21.93278 -20.69067 -19.91006 -18.89490 -18.30952 -17.22473 -16.91962 -16.76254 -16.36463 -16.18366 -15.70039 -15.15396 -14.72634 -14.49551 -14.40167 -14.26650 -14.07390 -13.90363 -13.68565 -13.09186 -13.04681 -12.76930 -12.44552 -12.33047 -12.07024 -11.95061 -11.69211 -11.62177 -11.42885 -11.22608 -11.20588 -10.80411 -10.64938 -10.53343 -9.84355 -8.62176 -8.29109 -6.58177 0.16575 0.56530 1.36214 1.41590 1.50280 1.53353 2.29340 2.74582 2.87849 2.93295 3.46755 3.72841 3.80510 3.88201 4.11475 4.34074 4.42395 4.48206 4.54602 4.60976 4.69309 4.77062 4.79979 4.83102 4.89236 4.97278 5.05251 5.11074 5.19135 5.21337 5.25102 5.37264 5.41949 5.48442 5.49676 5.63632 5.67989 5.96680 6.09954 6.41356 6.61298 6.86942 7.15834 7.90510 8.64605 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.045443 B = 0.002967 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.008674 B = 9434.720289 C = 9492.404340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.093 4.093 3 H 0.086 0.914 4 C -0.115 4.115 5 C -0.096 4.096 6 C -0.088 4.088 7 H 0.096 0.904 8 C 0.485 3.515 9 O -0.615 6.615 10 N -0.711 5.711 11 C 0.451 3.549 12 C -0.347 4.347 13 C 0.179 3.821 14 N -0.344 5.344 15 C 0.266 3.734 16 C -0.565 4.565 17 H 0.059 0.941 18 C 0.030 3.970 19 N -0.913 5.913 20 Si 0.965 3.035 21 H -0.273 1.273 22 H -0.273 1.273 23 H -0.278 1.278 24 N -0.462 5.462 25 H 0.452 0.548 26 C -0.100 4.100 27 H 0.057 0.943 28 H 0.069 0.931 29 H 0.047 0.953 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.040 0.960 33 H 0.074 0.926 34 H 0.174 0.826 35 H 0.226 0.774 36 H 0.074 0.926 37 H 0.045 0.955 38 H 0.274 0.726 39 H 0.062 0.938 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.072 9.179 -6.285 15.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.111 4.111 3 H 0.105 0.895 4 C -0.152 4.152 5 C -0.135 4.135 6 C -0.109 4.109 7 H 0.114 0.886 8 C 0.272 3.728 9 O -0.499 6.499 10 N -0.475 5.475 11 C 0.202 3.798 12 C -0.379 4.379 13 C 0.033 3.967 14 N -0.129 5.129 15 C 0.149 3.851 16 C -0.604 4.604 17 H 0.077 0.923 18 C -0.172 4.172 19 N -0.550 5.550 20 Si 0.790 3.210 21 H -0.198 1.198 22 H -0.198 1.198 23 H -0.204 1.204 24 N -0.185 5.185 25 H 0.301 0.699 26 C -0.138 4.138 27 H 0.076 0.924 28 H 0.088 0.912 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.101 0.899 32 H 0.059 0.941 33 H 0.093 0.907 34 H 0.191 0.809 35 H 0.242 0.758 36 H 0.091 0.909 37 H 0.063 0.937 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.515 8.973 -6.531 15.289 hybrid contribution 0.956 -0.269 0.973 1.390 sum -9.559 8.704 -5.558 14.073 Atomic orbital electron populations 1.21777 0.94054 1.01690 1.02271 1.21980 0.96273 0.99281 0.93578 0.89526 1.22231 0.96187 0.98887 0.97917 1.21919 0.99227 0.99408 0.92900 1.21796 0.98035 0.94953 0.96088 0.88573 1.21438 0.82979 0.86512 0.81843 1.90484 1.59822 1.63470 1.36136 1.68877 1.22472 1.17298 1.38873 1.19555 0.83178 0.88359 0.88727 1.22403 1.05683 1.02575 1.07193 1.23440 0.82366 0.97627 0.93251 1.47940 1.17231 1.19774 1.27937 1.19799 0.81965 0.85531 0.97823 1.21613 1.11045 1.10032 1.17677 0.92284 1.25598 0.98187 0.94546 0.98895 1.69964 1.28490 1.14995 1.41572 0.85391 0.78311 0.78439 0.78885 1.19780 1.19821 1.20407 1.44581 1.17588 1.22511 1.33774 0.69897 1.22419 0.93927 0.99486 0.98013 0.92438 0.91222 0.93348 0.91650 0.89905 0.94088 0.90690 0.80902 0.75776 0.90869 0.93726 0.91651 0.91948 0.92550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 9.14 71.98 0.66 -1.70 16 2 C -0.09 -1.82 3.46 -9.72 -0.03 -1.86 16 3 H 0.09 1.48 8.14 -2.38 -0.02 1.46 16 4 C -0.11 -2.27 6.37 31.32 0.20 -2.07 16 5 C -0.10 -2.51 6.37 31.39 0.20 -2.31 16 6 C -0.09 -2.66 3.34 -10.39 -0.03 -2.70 16 7 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 8 C 0.48 19.15 6.89 87.95 0.61 19.76 16 9 O -0.61 -26.95 12.62 -3.99 -0.05 -27.00 16 10 N -0.71 -28.52 10.49 -309.87 -3.25 -31.77 16 11 C 0.45 17.68 8.07 133.83 1.08 18.76 16 12 C -0.35 -12.94 9.51 22.23 0.21 -12.73 16 13 C 0.18 5.80 11.46 83.28 0.95 6.75 16 14 N -0.34 -12.40 3.63 -350.79 -1.27 -13.68 16 15 C 0.27 10.75 6.19 85.63 0.53 11.28 16 16 C -0.57 -26.24 9.39 25.60 0.24 -26.00 16 17 H 0.06 2.84 7.81 -2.91 -0.02 2.82 16 18 C 0.03 1.44 5.46 84.65 0.46 1.90 16 19 N -0.91 -45.40 13.29 21.45 0.28 -45.12 16 20 Si 0.96 38.63 29.54 68.60 2.03 40.65 16 21 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 22 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 23 H -0.28 -11.05 7.11 99.48 0.71 -10.35 16 24 N -0.46 -16.40 7.37 -54.81 -0.40 -16.81 16 25 H 0.45 14.21 8.96 -213.28 -1.91 12.30 16 26 C -0.10 -2.71 5.36 31.88 0.17 -2.54 16 27 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.05 0.88 8.08 -2.39 -0.02 0.86 16 30 H 0.06 1.26 7.79 -2.39 -0.02 1.24 16 31 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.04 1.22 7.83 -2.39 -0.02 1.20 16 33 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.17 6.89 5.77 -2.91 -0.02 6.88 16 35 H 0.23 5.37 8.06 -2.91 -0.02 5.35 16 36 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 37 H 0.04 1.88 8.14 -2.38 -0.02 1.86 16 38 H 0.27 12.94 8.31 -92.71 -0.77 12.17 16 39 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.06 1.76 7.37 -2.38 -0.02 1.75 16 Total: -1.00 -59.40 332.52 1.70 -57.70 By element: Atomic # 1 Polarization: 30.33 SS G_CDS: -0.87 Total: 29.46 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: 5.24 Total: 6.56 kcal Atomic # 7 Polarization: -102.73 SS G_CDS: -4.64 Total: -107.37 kcal Atomic # 8 Polarization: -26.95 SS G_CDS: -0.05 Total: -27.00 kcal Atomic # 14 Polarization: 38.63 SS G_CDS: 2.03 Total: 40.65 kcal Total: -59.40 1.70 -57.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345297098.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.183 kcal (2) G-P(sol) polarization free energy of solvation -59.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds