Wall clock time and date at job start Mon Mar 30 2020 20:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09008 * 110.72609 * 2 1 4 4 C 1.54347 * 110.99090 * 123.52337 * 2 1 3 5 5 C 1.51379 * 105.17164 * 144.66058 * 4 2 1 6 6 C 1.38508 * 130.36046 * 163.08955 * 5 4 2 7 7 C 1.38060 * 120.25166 * 180.12171 * 6 5 4 8 8 C 1.38473 * 119.90784 * 359.57759 * 7 6 5 9 9 F 1.35106 * 120.05957 * 180.19204 * 8 7 6 10 10 C 1.38329 * 119.88169 * 0.20516 * 8 7 6 11 11 C 1.38235 * 109.74879 * 342.80814 * 5 4 2 12 12 C 1.51369 * 109.76217 * 0.02562 * 11 5 4 13 13 H 1.08993 * 110.30743 * 136.11646 * 12 11 5 14 14 N 1.46904 * 110.30311 * 258.17618 * 12 11 5 15 15 C 1.46904 * 110.99767 * 273.54640 * 14 12 11 16 16 C 1.52997 * 109.47099 * 180.02562 * 15 14 12 17 17 C 1.52999 * 109.47168 * 180.02562 * 16 15 14 18 18 C 1.50696 * 109.47261 * 179.97438 * 17 16 15 19 19 H 1.07998 * 120.00062 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00085 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00139 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00213 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47046 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47340 * 120.00205 * 22 20 18 25 25 H 1.48497 * 109.47552 * 240.00560 * 22 20 18 26 26 H 1.08998 * 109.47241 * 183.40846 * 1 2 3 27 27 H 1.09001 * 109.47287 * 303.40684 * 1 2 3 28 28 H 1.09003 * 109.46914 * 63.40475 * 1 2 3 29 29 H 1.09003 * 110.30086 * 25.73294 * 4 2 1 30 30 H 1.08998 * 110.30184 * 263.58448 * 4 2 1 31 31 H 1.08001 * 119.87498 * 359.67225 * 6 5 4 32 32 H 1.08007 * 120.04628 * 179.78412 * 7 6 5 33 33 H 1.08001 * 119.90131 * 179.97438 * 10 8 7 34 34 H 1.00906 * 111.00164 * 37.49590 * 14 12 11 35 35 H 1.08998 * 109.46640 * 299.99839 * 15 14 12 36 36 H 1.08997 * 109.47242 * 59.99470 * 15 14 12 37 37 H 1.09004 * 109.46933 * 299.99797 * 16 15 14 38 38 H 1.08997 * 109.47560 * 59.99599 * 16 15 14 39 39 H 1.09004 * 109.46914 * 299.99669 * 17 16 15 40 40 H 1.08997 * 109.47322 * 59.99314 * 17 16 15 41 41 H 0.97001 * 120.00202 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9158 1.0195 0.0000 4 6 2.0829 -0.7959 1.2013 5 6 3.3376 -1.4689 0.6871 6 6 4.3946 -2.0415 1.3750 7 6 5.4503 -2.6036 0.6853 8 6 5.4489 -2.6031 -0.6994 9 9 6.4786 -3.1558 -1.3774 10 6 4.3916 -2.0354 -1.3873 11 6 3.3351 -1.4679 -0.6953 12 6 2.0790 -0.7937 -1.2043 13 1 2.3185 -0.1182 -2.0255 14 7 1.1018 -1.7997 -1.6413 15 6 1.3353 -2.1882 -3.0386 16 6 0.3002 -3.2343 -3.4569 17 6 0.5437 -3.6395 -4.9120 18 6 -0.4755 -4.6703 -5.3238 19 1 -1.2225 -5.0029 -4.6184 20 6 -0.4549 -5.1880 -6.6015 21 7 0.4545 -4.7827 -7.4608 22 14 -1.7178 -6.4663 -7.1118 23 1 -2.6235 -6.7507 -5.9698 24 1 -2.5113 -5.9492 -8.2555 25 1 -1.0229 -7.7150 -7.5158 26 1 -0.3633 -1.0258 0.0611 27 1 -0.3634 0.5658 0.8579 28 1 -0.3633 0.4601 -0.9190 29 1 1.3586 -1.5431 1.5256 30 1 2.3251 -0.1214 2.0226 31 1 4.3965 -2.0418 2.4550 32 1 6.2745 -3.0461 1.2251 33 1 4.3903 -2.0345 -2.4673 34 1 1.1167 -2.6058 -1.0345 35 1 1.2445 -1.3113 -3.6795 36 1 2.3365 -2.6077 -3.1367 37 1 0.3905 -4.1114 -2.8160 38 1 -0.7009 -2.8144 -3.3590 39 1 0.4537 -2.7626 -5.5532 40 1 1.5448 -4.0595 -5.0096 41 1 0.4688 -5.1467 -8.3598 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361106678.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:21:51 Heat of formation + Delta-G solvation = -41.684378 kcal Electronic energy + Delta-G solvation = -21030.590955 eV Core-core repulsion = 17823.537832 eV Total energy + Delta-G solvation = -3207.053122 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.95092 -40.57801 -36.94439 -35.06221 -33.12921 -31.56208 -30.70668 -30.31490 -27.00797 -26.14523 -25.10307 -22.49874 -22.34030 -21.24249 -20.34773 -19.59599 -17.39201 -16.78283 -16.25818 -15.79011 -15.67443 -15.39855 -15.18863 -14.50466 -14.27532 -13.80901 -13.72061 -13.58055 -13.33309 -13.07168 -12.50564 -12.23149 -11.95751 -11.82425 -11.72112 -11.51000 -11.21786 -11.07584 -10.88833 -10.83253 -10.67654 -10.57187 -10.39511 -9.70694 -9.37066 -9.17181 -9.02360 -8.65406 -8.33002 -8.16268 -5.97897 -3.99891 0.97519 1.04538 3.32598 3.37008 3.39964 3.44386 3.94415 4.22570 4.32832 4.46906 4.56416 4.75053 4.82121 4.88871 5.01202 5.11579 5.38104 5.42709 5.49676 5.52617 5.59151 5.67180 5.77532 5.82324 5.89426 5.90372 5.96546 6.04618 6.09828 6.19587 6.31949 6.39080 6.50034 6.72112 6.73886 6.75959 7.14195 7.28682 7.56027 7.70395 7.85007 8.02498 8.45764 9.07530 9.64167 11.13602 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017548 B = 0.003909 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.228411 B = 7160.818086 C = 8313.977999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.081 4.081 3 H 0.079 0.921 4 C -0.078 4.078 5 C -0.099 4.099 6 C -0.085 4.085 7 C -0.151 4.151 8 C 0.095 3.905 9 F -0.139 7.139 10 C -0.131 4.131 11 C -0.100 4.100 12 C 0.126 3.874 13 H 0.088 0.912 14 N -0.666 5.666 15 C 0.055 3.945 16 C -0.106 4.106 17 C 0.022 3.978 18 C -0.518 4.518 19 H 0.055 0.945 20 C 0.056 3.944 21 N -0.896 5.896 22 Si 0.891 3.109 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 H 0.068 0.932 27 H 0.043 0.957 28 H 0.060 0.940 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.129 0.871 32 H 0.135 0.865 33 H 0.134 0.866 34 H 0.340 0.660 35 H 0.068 0.932 36 H 0.026 0.974 37 H 0.044 0.956 38 H 0.056 0.944 39 H 0.016 0.984 40 H 0.013 0.987 41 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.234 9.838 19.462 22.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.100 4.100 3 H 0.098 0.902 4 C -0.115 4.115 5 C -0.100 4.100 6 C -0.103 4.103 7 C -0.171 4.171 8 C 0.075 3.925 9 F -0.118 7.118 10 C -0.150 4.150 11 C -0.102 4.102 12 C 0.015 3.985 13 H 0.106 0.894 14 N -0.294 5.294 15 C -0.073 4.073 16 C -0.144 4.144 17 C -0.016 4.016 18 C -0.556 4.556 19 H 0.074 0.926 20 C -0.145 4.145 21 N -0.536 5.536 22 Si 0.719 3.281 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.211 1.211 26 H 0.087 0.913 27 H 0.062 0.938 28 H 0.079 0.921 29 H 0.103 0.897 30 H 0.093 0.907 31 H 0.147 0.853 32 H 0.153 0.847 33 H 0.152 0.848 34 H 0.158 0.842 35 H 0.087 0.913 36 H 0.044 0.956 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.034 0.966 40 H 0.031 0.969 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.811 10.257 19.071 22.700 hybrid contribution 0.646 -1.529 -0.536 1.744 sum 7.457 8.728 18.535 21.802 Atomic orbital electron populations 1.21496 0.92861 1.02769 1.00902 1.21876 0.97345 0.98012 0.92813 0.90222 1.21195 0.93325 0.98644 0.98364 1.20717 0.96253 0.98843 0.94203 1.20441 0.92459 0.97462 0.99912 1.21015 1.00593 1.03202 0.92244 1.17544 0.86299 0.98496 0.90114 1.91511 1.56730 1.83241 1.80317 1.20721 0.93029 1.00196 1.01073 1.21298 0.95976 0.98335 0.94603 1.21159 0.85697 0.93993 0.97616 0.89380 1.60897 1.47952 1.16053 1.04515 1.22225 0.98297 0.99366 0.87418 1.21609 0.97390 0.95638 0.99742 1.19064 0.96915 0.96284 0.89305 1.21288 1.14438 1.22765 0.97119 0.92637 1.25028 0.95847 0.96899 0.96745 1.69976 1.34463 1.43690 1.05462 0.86549 0.81536 0.81458 0.78547 1.19722 1.21016 1.21063 0.91334 0.93843 0.92113 0.89716 0.90710 0.85321 0.84732 0.84815 0.84249 0.91335 0.95617 0.93749 0.92497 0.96585 0.96865 0.93105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.19 8.56 37.16 0.32 -0.87 16 2 C -0.08 -0.78 3.62 -89.22 -0.32 -1.10 16 3 H 0.08 0.69 8.14 -51.92 -0.42 0.27 16 4 C -0.08 -0.68 6.32 -26.84 -0.17 -0.85 16 5 C -0.10 -1.04 6.14 -104.19 -0.64 -1.68 16 6 C -0.08 -0.82 10.04 -39.55 -0.40 -1.21 16 7 C -0.15 -1.60 10.03 -39.56 -0.40 -2.00 16 8 C 0.09 1.22 7.30 -39.46 -0.29 0.93 16 9 F -0.14 -1.94 17.27 2.25 0.04 -1.90 16 10 C -0.13 -1.73 9.55 -39.47 -0.38 -2.10 16 11 C -0.10 -1.21 5.39 -104.21 -0.56 -1.77 16 12 C 0.13 1.49 3.03 -67.84 -0.21 1.28 16 13 H 0.09 1.08 7.86 -51.93 -0.41 0.67 16 14 N -0.67 -9.12 4.66 -106.86 -0.50 -9.62 16 15 C 0.06 0.93 5.51 -3.82 -0.02 0.91 16 16 C -0.11 -2.18 5.41 -26.73 -0.14 -2.33 16 17 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 18 C -0.52 -14.88 9.11 -34.44 -0.31 -15.19 16 19 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 20 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 21 N -0.90 -27.31 13.29 55.43 0.74 -26.57 16 22 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 23 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 26 H 0.07 0.73 7.33 -51.93 -0.38 0.35 16 27 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.08 0.72 7.85 -51.93 -0.41 0.31 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 32 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 33 H 0.13 1.81 7.55 -52.49 -0.40 1.41 16 34 H 0.34 4.65 8.49 -39.29 -0.33 4.31 16 35 H 0.07 1.17 8.07 -51.93 -0.42 0.75 16 36 H 0.03 0.45 7.08 -51.93 -0.37 0.08 16 37 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 338.04 15.07 5.09 5.09 Total: -1.00 -30.36 338.04 -9.89 -40.24 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -6.48 Total: -0.12 kcal Atomic # 6 Polarization: -20.28 SS G_CDS: -3.76 Total: -24.03 kcal Atomic # 7 Polarization: -36.43 SS G_CDS: 0.24 Total: -36.19 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 0.04 Total: -1.90 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.36 -9.89 -40.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361106678.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.443 kcal (2) G-P(sol) polarization free energy of solvation -30.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds