Wall clock time and date at job start Mon Mar 30 2020 20:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50696 * 120.00158 * 2 1 4 4 N 1.46500 * 109.47151 * 124.99805 * 3 2 1 5 5 C 1.46497 * 119.99876 * 269.99698 * 4 3 2 6 6 C 1.50701 * 109.47589 * 270.00417 * 5 4 3 7 7 H 1.08002 * 119.99536 * 359.97438 * 6 5 4 8 8 C 1.37880 * 120.00473 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99459 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00198 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.46801 * 60.00036 * 10 8 6 12 12 H 1.48494 * 109.47056 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47049 * 300.00229 * 10 8 6 14 14 C 1.34776 * 120.00185 * 89.99956 * 4 3 2 15 15 O 1.21280 * 119.99923 * 179.97438 * 14 4 3 16 16 C 1.50703 * 119.99815 * 0.02562 * 14 4 3 17 17 C 1.53000 * 109.46801 * 179.97438 * 16 14 4 18 18 H 1.09002 * 109.47398 * 305.00045 * 17 16 14 19 19 C 1.53002 * 109.47233 * 65.00219 * 17 16 14 20 20 N 1.46499 * 109.46840 * 184.99719 * 17 16 14 21 21 C 1.34950 * 126.04099 * 274.71518 * 20 17 16 22 22 C 1.35315 * 107.74423 * 179.83807 * 21 20 17 23 23 C 1.39871 * 107.92375 * 0.42973 * 22 21 20 24 24 N 1.30831 * 108.19955 * 359.73088 * 23 22 21 25 25 H 1.08003 * 119.99716 * 179.97438 * 1 2 3 26 26 H 1.08001 * 120.00230 * 0.02562 * 1 2 3 27 27 H 1.08004 * 119.99768 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.47102 * 4.99548 * 3 2 1 29 29 H 1.09002 * 109.47161 * 244.99381 * 3 2 1 30 30 H 1.09000 * 109.47433 * 30.00287 * 5 4 3 31 31 H 1.09004 * 109.47370 * 149.99979 * 5 4 3 32 32 H 0.97004 * 119.99604 * 179.97438 * 9 8 6 33 33 H 1.09002 * 109.47083 * 60.00009 * 16 14 4 34 34 H 1.08991 * 109.46995 * 300.00066 * 16 14 4 35 35 H 1.09000 * 109.46986 * 299.99797 * 19 17 16 36 36 H 1.09002 * 109.47075 * 59.99068 * 19 17 16 37 37 H 1.08996 * 109.47407 * 180.02562 * 19 17 16 38 38 H 1.07998 * 126.12520 * 0.02562 * 21 20 17 39 39 H 1.07999 * 126.03675 * 180.16099 * 22 21 20 40 40 H 1.07996 * 125.89659 * 179.71517 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9937 1.3318 1.1315 5 6 2.5588 1.8650 2.4248 6 6 2.8441 3.3437 2.4803 7 1 3.3039 3.8369 1.6367 8 6 2.5192 4.0667 3.6085 9 7 1.9598 3.4659 4.6360 10 14 2.8736 5.8994 3.6776 11 1 2.1378 6.5872 2.5864 12 1 2.4326 6.4398 4.9885 13 1 4.3315 6.1282 3.5123 14 6 4.2497 0.8661 0.9825 15 8 5.0199 0.8887 1.9191 16 6 4.6973 0.3182 -0.3482 17 6 6.1537 -0.1394 -0.2473 18 1 6.7695 0.6848 0.1127 19 6 6.2529 -1.3141 0.7280 20 7 6.6257 -0.5608 -1.5687 21 6 6.4681 -1.7846 -2.1150 22 6 7.0398 -1.7655 -3.3413 23 6 7.5734 -0.4892 -3.5477 24 7 7.3257 0.2338 -2.4858 25 1 -0.5400 -0.9354 -0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.8500 -0.9354 0.0004 28 1 1.3586 2.1316 0.0895 29 1 2.6214 1.4025 -0.9313 30 1 1.4887 1.6967 2.5459 31 1 3.0988 1.3604 3.2260 32 1 1.7315 3.9744 5.4299 33 1 4.6127 1.0952 -1.1080 34 1 4.0681 -0.5284 -0.6227 35 1 5.9017 -1.0007 1.7111 36 1 5.6370 -2.1383 0.3680 37 1 7.2905 -1.6399 0.8002 38 1 5.9717 -2.6273 -1.6569 39 1 7.0809 -2.5913 -4.0361 40 1 8.0993 -0.1579 -4.4309 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424828324.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:22:39 Heat of formation + Delta-G solvation = 63.727656 kcal Electronic energy + Delta-G solvation = -21505.317348 eV Core-core repulsion = 18322.755197 eV Total energy + Delta-G solvation = -3182.562152 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.20909 -39.36179 -36.06247 -35.06460 -33.22571 -32.14067 -30.36790 -29.81386 -28.51420 -26.99748 -25.44937 -23.66262 -22.38655 -21.04618 -20.16043 -19.79515 -18.44564 -17.39014 -16.55519 -16.08441 -15.75529 -15.25373 -14.84089 -14.67986 -14.39968 -14.04538 -13.73751 -13.41425 -13.14833 -12.78230 -12.68393 -12.48789 -12.32273 -11.79538 -11.60961 -11.40069 -11.28964 -11.17108 -11.02530 -10.94267 -10.63448 -10.61404 -10.21956 -9.69927 -9.45546 -9.25017 -9.03875 -8.59494 -8.46000 -7.77944 -6.07596 -4.12589 1.91868 2.37388 2.48817 2.84647 3.24890 3.30646 3.34953 3.39271 3.93872 4.42426 4.51656 4.76144 4.79988 4.95851 5.00634 5.12919 5.26024 5.28361 5.34556 5.40788 5.50938 5.56752 5.66626 5.71945 5.84358 5.95874 5.97026 6.00750 6.13264 6.26419 6.65245 6.72504 6.84033 7.00818 7.05626 7.38245 7.46786 7.74733 7.88154 8.18818 8.29641 8.82427 8.97790 9.52653 11.00472 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018610 B = 0.004549 C = 0.004079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.237105 B = 6153.926043 C = 6862.258463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.169 4.169 3 C 0.134 3.866 4 N -0.589 5.589 5 C 0.248 3.752 6 C -0.529 4.529 7 H 0.057 0.943 8 C 0.063 3.937 9 N -0.894 5.894 10 Si 0.898 3.102 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.512 3.488 15 O -0.538 6.538 16 C -0.153 4.153 17 C 0.174 3.826 18 H 0.112 0.888 19 C -0.166 4.166 20 N -0.361 5.361 21 C 0.056 3.944 22 C -0.282 4.282 23 C 0.037 3.963 24 N -0.296 5.296 25 H 0.094 0.906 26 H 0.099 0.901 27 H 0.103 0.897 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.033 0.967 31 H 0.044 0.956 32 H 0.264 0.736 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.107 0.893 36 H 0.057 0.943 37 H 0.062 0.938 38 H 0.170 0.830 39 H 0.143 0.857 40 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.093 -11.639 -14.232 18.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.188 4.188 3 C 0.010 3.990 4 N -0.319 5.319 5 C 0.129 3.871 6 C -0.568 4.568 7 H 0.075 0.925 8 C -0.140 4.140 9 N -0.533 5.533 10 Si 0.725 3.275 11 H -0.202 1.202 12 H -0.211 1.211 13 H -0.201 1.201 14 C 0.298 3.702 15 O -0.416 6.416 16 C -0.194 4.194 17 C 0.072 3.928 18 H 0.130 0.870 19 C -0.224 4.224 20 N -0.143 5.143 21 C -0.091 4.091 22 C -0.312 4.312 23 C -0.149 4.149 24 N -0.117 5.117 25 H 0.113 0.887 26 H 0.118 0.882 27 H 0.121 0.879 28 H 0.107 0.893 29 H 0.092 0.908 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.114 0.886 34 H 0.109 0.891 35 H 0.125 0.875 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.187 0.813 39 H 0.161 0.839 40 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 3.502 -10.371 -12.821 16.858 hybrid contribution -0.115 0.139 -0.448 0.483 sum 3.387 -10.232 -13.269 17.095 Atomic orbital electron populations 1.23830 0.95832 1.01835 1.00304 1.23386 0.96410 0.98878 1.00158 1.20612 0.93188 0.95476 0.89682 1.48214 1.10294 1.59722 1.13716 1.19297 0.95453 0.93805 0.78551 1.21387 1.40776 0.93298 1.01318 0.92505 1.24920 0.94964 0.98770 0.95297 1.69924 1.41893 1.36311 1.05166 0.86563 0.78890 0.84845 0.77175 1.20242 1.21147 1.20135 1.19937 0.82568 0.78771 0.88896 1.90656 1.52357 1.56602 1.41971 1.22121 0.96037 1.02775 0.98458 1.21030 0.94625 0.99826 0.77316 0.87007 1.22317 1.02547 0.96251 1.01275 1.49084 1.42481 1.08214 1.14516 1.22504 1.01313 0.90287 0.95020 1.21467 1.11394 0.99566 0.98781 1.23853 1.00499 0.92967 0.97534 1.77412 1.14698 1.19096 1.00505 0.88722 0.88225 0.87877 0.89302 0.90827 0.94910 0.93770 0.92633 0.88637 0.89051 0.87483 0.92406 0.91936 0.81292 0.83873 0.80357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.25 14.32 29.01 0.42 -1.83 16 2 C -0.17 -2.30 9.74 -36.03 -0.35 -2.65 16 3 C 0.13 2.12 5.65 -5.20 -0.03 2.09 16 4 N -0.59 -11.92 2.44 -176.43 -0.43 -12.35 16 5 C 0.25 6.31 5.16 -5.19 -0.03 6.28 16 6 C -0.53 -14.77 9.39 -34.44 -0.32 -15.09 16 7 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 8 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 9 N -0.89 -26.28 13.29 55.43 0.74 -25.54 16 10 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 14 C 0.51 9.93 7.39 -10.98 -0.08 9.85 16 15 O -0.54 -12.37 13.55 5.56 0.08 -12.30 16 16 C -0.15 -2.21 4.05 -27.88 -0.11 -2.32 16 17 C 0.17 2.47 3.05 -67.93 -0.21 2.26 16 18 H 0.11 1.84 7.95 -51.93 -0.41 1.42 16 19 C -0.17 -2.09 8.57 37.16 0.32 -1.78 16 20 N -0.36 -4.89 3.53 -54.86 -0.19 -5.08 16 21 C 0.06 0.61 10.59 -17.22 -0.18 0.43 16 22 C -0.28 -2.96 10.80 -40.01 -0.43 -3.39 16 23 C 0.04 0.44 12.03 -17.37 -0.21 0.23 16 24 N -0.30 -4.38 12.58 30.62 0.39 -4.00 16 25 H 0.09 1.01 8.06 -52.48 -0.42 0.58 16 26 H 0.10 1.23 7.84 -52.49 -0.41 0.82 16 27 H 0.10 1.29 7.83 -52.48 -0.41 0.88 16 28 H 0.09 1.48 7.72 -51.93 -0.40 1.07 16 29 H 0.07 1.00 6.44 -51.93 -0.33 0.66 16 30 H 0.03 0.85 8.07 -51.93 -0.42 0.44 16 31 H 0.04 1.26 7.42 -51.93 -0.39 0.88 16 32 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.10 1.38 7.40 -51.93 -0.38 1.00 16 34 H 0.09 1.11 7.78 -51.93 -0.40 0.71 16 35 H 0.11 1.63 5.95 -51.93 -0.31 1.32 16 36 H 0.06 0.59 7.15 -51.93 -0.37 0.22 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.17 1.36 7.26 -52.49 -0.38 0.98 16 39 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 40 H 0.18 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 339.69 15.07 5.12 5.12 Total: -1.00 -32.74 339.69 -6.51 -39.25 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -5.86 Total: 2.40 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: -1.32 Total: -4.24 kcal Atomic # 7 Polarization: -47.47 SS G_CDS: 0.50 Total: -46.97 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: 0.08 Total: -12.30 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.74 -6.51 -39.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424828324.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.980 kcal (2) G-P(sol) polarization free energy of solvation -32.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds