Wall clock time and date at job start Mon Mar 30 2020 20:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50696 * 120.00158 * 2 1 4 4 N 1.46500 * 109.47151 * 124.99805 * 3 2 1 5 5 C 1.46497 * 119.99876 * 269.99698 * 4 3 2 6 6 C 1.50701 * 109.47589 * 270.00417 * 5 4 3 7 7 H 1.08002 * 119.99536 * 359.97438 * 6 5 4 8 8 C 1.37880 * 120.00473 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99459 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00198 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.46801 * 60.00036 * 10 8 6 12 12 H 1.48494 * 109.47056 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47049 * 300.00229 * 10 8 6 14 14 C 1.34776 * 120.00185 * 89.99956 * 4 3 2 15 15 O 1.21280 * 119.99923 * 179.97438 * 14 4 3 16 16 C 1.50703 * 119.99815 * 0.02562 * 14 4 3 17 17 C 1.53000 * 109.46801 * 179.97438 * 16 14 4 18 18 H 1.09002 * 109.47398 * 305.00045 * 17 16 14 19 19 C 1.53002 * 109.47233 * 65.00219 * 17 16 14 20 20 N 1.46499 * 109.46840 * 184.99719 * 17 16 14 21 21 C 1.34950 * 126.04099 * 274.71518 * 20 17 16 22 22 C 1.35315 * 107.74423 * 179.83807 * 21 20 17 23 23 C 1.39871 * 107.92375 * 0.42973 * 22 21 20 24 24 N 1.30831 * 108.19955 * 359.73088 * 23 22 21 25 25 H 1.08003 * 119.99716 * 179.97438 * 1 2 3 26 26 H 1.08001 * 120.00230 * 0.02562 * 1 2 3 27 27 H 1.08004 * 119.99768 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.47102 * 4.99548 * 3 2 1 29 29 H 1.09002 * 109.47161 * 244.99381 * 3 2 1 30 30 H 1.09000 * 109.47433 * 30.00287 * 5 4 3 31 31 H 1.09004 * 109.47370 * 149.99979 * 5 4 3 32 32 H 0.97004 * 119.99604 * 179.97438 * 9 8 6 33 33 H 1.09002 * 109.47083 * 60.00009 * 16 14 4 34 34 H 1.08991 * 109.46995 * 300.00066 * 16 14 4 35 35 H 1.09000 * 109.46986 * 299.99797 * 19 17 16 36 36 H 1.09002 * 109.47075 * 59.99068 * 19 17 16 37 37 H 1.08996 * 109.47407 * 180.02562 * 19 17 16 38 38 H 1.07998 * 126.12520 * 0.02562 * 21 20 17 39 39 H 1.07999 * 126.03675 * 180.16099 * 22 21 20 40 40 H 1.07996 * 125.89659 * 179.71517 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9937 1.3318 1.1315 5 6 2.5588 1.8650 2.4248 6 6 2.8441 3.3437 2.4803 7 1 3.3039 3.8369 1.6367 8 6 2.5192 4.0667 3.6085 9 7 1.9598 3.4659 4.6360 10 14 2.8736 5.8994 3.6776 11 1 2.1378 6.5872 2.5864 12 1 2.4326 6.4398 4.9885 13 1 4.3315 6.1282 3.5123 14 6 4.2497 0.8661 0.9825 15 8 5.0199 0.8887 1.9191 16 6 4.6973 0.3182 -0.3482 17 6 6.1537 -0.1394 -0.2473 18 1 6.7695 0.6848 0.1127 19 6 6.2529 -1.3141 0.7280 20 7 6.6257 -0.5608 -1.5687 21 6 6.4681 -1.7846 -2.1150 22 6 7.0398 -1.7655 -3.3413 23 6 7.5734 -0.4892 -3.5477 24 7 7.3257 0.2338 -2.4858 25 1 -0.5400 -0.9354 -0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.8500 -0.9354 0.0004 28 1 1.3586 2.1316 0.0895 29 1 2.6214 1.4025 -0.9313 30 1 1.4887 1.6967 2.5459 31 1 3.0988 1.3604 3.2260 32 1 1.7315 3.9744 5.4299 33 1 4.6127 1.0952 -1.1080 34 1 4.0681 -0.5284 -0.6227 35 1 5.9017 -1.0007 1.7111 36 1 5.6370 -2.1383 0.3680 37 1 7.2905 -1.6399 0.8002 38 1 5.9717 -2.6273 -1.6569 39 1 7.0809 -2.5913 -4.0361 40 1 8.0993 -0.1579 -4.4309 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424828324.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:22:38 Heat of formation + Delta-G solvation = 43.614658 kcal Electronic energy + Delta-G solvation = -21506.189514 eV Core-core repulsion = 18322.755197 eV Total energy + Delta-G solvation = -3183.434317 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.13701 -40.86940 -37.47378 -36.28108 -35.09555 -33.69123 -31.45761 -30.77718 -29.95236 -28.49316 -26.89318 -25.15901 -23.87147 -21.92384 -21.29788 -20.80331 -19.89492 -18.70037 -18.44535 -17.41103 -17.24708 -16.65176 -16.35905 -15.88851 -15.65780 -15.24867 -14.95433 -14.52055 -14.31883 -14.22440 -13.96864 -13.80916 -13.48696 -13.33825 -13.04412 -12.90100 -12.81047 -12.61673 -12.41062 -12.26108 -12.22485 -12.15067 -11.70432 -11.53990 -10.69053 -10.65488 -10.37586 -10.31882 -9.49914 -9.47322 -8.23927 -6.38268 1.03974 1.30444 1.35469 1.38939 1.46209 1.50668 1.74042 2.03443 2.33760 2.51589 3.06083 3.45078 3.62852 3.69884 4.00618 4.02593 4.14866 4.15574 4.24527 4.34867 4.46881 4.47896 4.74415 4.79550 4.83126 4.84922 4.99073 5.01296 5.05292 5.19418 5.22295 5.25272 5.50162 5.69745 5.74924 5.82352 5.94120 6.04892 6.18647 6.65392 6.73813 6.86302 7.25404 7.41314 8.82899 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018610 B = 0.004549 C = 0.004079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.237105 B = 6153.926043 C = 6862.258463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.183 4.183 3 C 0.132 3.868 4 N -0.596 5.596 5 C 0.266 3.734 6 C -0.546 4.546 7 H 0.051 0.949 8 C 0.012 3.988 9 N -0.926 5.926 10 Si 0.963 3.037 11 H -0.262 1.262 12 H -0.277 1.277 13 H -0.279 1.279 14 C 0.506 3.494 15 O -0.582 6.582 16 C -0.132 4.132 17 C 0.180 3.820 18 H 0.077 0.923 19 C -0.157 4.157 20 N -0.374 5.374 21 C 0.054 3.946 22 C -0.282 4.282 23 C 0.037 3.963 24 N -0.350 5.350 25 H 0.119 0.881 26 H 0.096 0.904 27 H 0.120 0.880 28 H 0.075 0.925 29 H 0.099 0.901 30 H 0.022 0.978 31 H 0.002 0.998 32 H 0.267 0.733 33 H 0.098 0.902 34 H 0.125 0.875 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.068 0.932 38 H 0.202 0.798 39 H 0.173 0.827 40 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.727 -12.867 -16.600 21.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.202 4.202 3 C 0.009 3.991 4 N -0.325 5.325 5 C 0.145 3.855 6 C -0.584 4.584 7 H 0.069 0.931 8 C -0.188 4.188 9 N -0.565 5.565 10 Si 0.787 3.213 11 H -0.186 1.186 12 H -0.202 1.202 13 H -0.205 1.205 14 C 0.295 3.705 15 O -0.463 6.463 16 C -0.173 4.173 17 C 0.077 3.923 18 H 0.095 0.905 19 C -0.215 4.215 20 N -0.156 5.156 21 C -0.091 4.091 22 C -0.311 4.311 23 C -0.148 4.148 24 N -0.171 5.171 25 H 0.137 0.863 26 H 0.114 0.886 27 H 0.138 0.862 28 H 0.093 0.907 29 H 0.117 0.883 30 H 0.040 0.960 31 H 0.020 0.980 32 H 0.076 0.924 33 H 0.117 0.883 34 H 0.143 0.857 35 H 0.095 0.905 36 H 0.107 0.893 37 H 0.087 0.913 38 H 0.218 0.782 39 H 0.190 0.810 40 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 3.120 -11.615 -15.245 19.418 hybrid contribution 0.001 0.463 0.229 0.517 sum 3.122 -11.152 -15.016 18.963 Atomic orbital electron populations 1.24060 0.95601 1.02880 0.98181 1.23307 0.96755 0.98146 1.01983 1.20818 0.92713 0.96647 0.88878 1.48179 1.11628 1.59587 1.13141 1.18696 0.93966 0.92518 0.80349 1.21681 1.40740 0.94654 1.01351 0.93113 1.25786 0.94625 1.03461 0.94878 1.70035 1.42664 1.38102 1.05713 0.85539 0.78439 0.79374 0.77910 1.18647 1.20201 1.20478 1.20764 0.81635 0.77862 0.90278 1.90639 1.53474 1.58209 1.44020 1.21978 0.96796 1.03688 0.94788 1.20752 0.93606 0.99464 0.78443 0.90485 1.22200 1.03495 0.96478 0.99337 1.48935 1.43448 1.09122 1.14113 1.23133 1.00853 0.89946 0.95190 1.21871 1.10386 0.99759 0.99050 1.24443 0.99588 0.93405 0.97385 1.77385 1.16779 1.20975 1.01957 0.86301 0.88599 0.86209 0.90651 0.88274 0.96028 0.97970 0.92372 0.88326 0.85705 0.90495 0.89268 0.91311 0.78159 0.80984 0.77813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.86 14.32 67.78 0.97 -2.89 16 2 C -0.18 -4.61 9.74 25.65 0.25 -4.36 16 3 C 0.13 4.06 5.65 85.63 0.48 4.55 16 4 N -0.60 -24.57 2.44 -830.50 -2.03 -26.60 16 5 C 0.27 14.13 5.16 85.63 0.44 14.57 16 6 C -0.55 -31.40 9.39 25.60 0.24 -31.16 16 7 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 8 C 0.01 0.68 5.46 84.65 0.46 1.15 16 9 N -0.93 -55.70 13.29 21.45 0.28 -55.42 16 10 Si 0.96 45.11 29.54 68.60 2.03 47.14 16 11 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 12 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 13 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 14 C 0.51 20.04 7.39 87.66 0.65 20.69 16 15 O -0.58 -28.21 13.55 -3.03 -0.04 -28.25 16 16 C -0.13 -3.67 4.05 29.85 0.12 -3.55 16 17 C 0.18 5.05 3.05 44.99 0.14 5.19 16 18 H 0.08 2.67 7.95 -2.39 -0.02 2.65 16 19 C -0.16 -3.84 8.57 71.98 0.62 -3.22 16 20 N -0.37 -9.53 3.53 -327.49 -1.16 -10.69 16 21 C 0.05 1.02 10.59 83.54 0.88 1.90 16 22 C -0.28 -4.92 10.80 21.99 0.24 -4.68 16 23 C 0.04 0.79 12.03 85.24 1.03 1.81 16 24 N -0.35 -10.02 12.58 -57.03 -0.72 -10.74 16 25 H 0.12 2.15 8.06 -2.91 -0.02 2.12 16 26 H 0.10 2.24 7.84 -2.91 -0.02 2.22 16 27 H 0.12 2.63 7.83 -2.91 -0.02 2.60 16 28 H 0.08 2.51 7.72 -2.39 -0.02 2.49 16 29 H 0.10 2.51 6.44 -2.39 -0.02 2.50 16 30 H 0.02 1.18 8.07 -2.39 -0.02 1.16 16 31 H 0.00 0.13 7.42 -2.38 -0.02 0.12 16 32 H 0.27 15.13 8.31 -92.70 -0.77 14.36 16 33 H 0.10 2.73 7.40 -2.39 -0.02 2.71 16 34 H 0.12 2.64 7.78 -2.39 -0.02 2.63 16 35 H 0.08 2.41 5.95 -2.39 -0.01 2.40 16 36 H 0.09 1.57 7.15 -2.39 -0.02 1.55 16 37 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.20 2.27 7.26 -2.91 -0.02 2.25 16 39 H 0.17 1.93 8.06 -2.91 -0.02 1.90 16 40 H 0.21 2.91 8.06 -2.91 -0.02 2.88 16 Total: -1.00 -74.60 339.69 5.90 -68.69 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: 1.01 Total: 15.88 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: 6.52 Total: -0.01 kcal Atomic # 7 Polarization: -99.83 SS G_CDS: -3.61 Total: -103.45 kcal Atomic # 8 Polarization: -28.21 SS G_CDS: -0.04 Total: -28.25 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -74.60 5.90 -68.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424828324.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.309 kcal (2) G-P(sol) polarization free energy of solvation -74.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds