Wall clock time and date at job start Mon Mar 30 2020 20:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47224 * 2 1 4 4 C 1.52992 * 109.47181 * 120.00612 * 2 1 3 5 5 C 1.50704 * 109.47460 * 195.36695 * 4 2 1 6 6 H 1.08007 * 119.99530 * 5.59450 * 5 4 2 7 7 C 1.37867 * 120.00389 * 185.59902 * 5 4 2 8 8 N 1.31520 * 120.00311 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00200 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47291 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.47081 * 119.99883 * 9 7 5 12 12 H 1.48502 * 109.47426 * 239.99806 * 9 7 5 13 13 N 1.46901 * 109.46923 * 240.00605 * 2 1 3 14 14 C 1.47113 * 111.00027 * 47.03195 * 13 2 1 15 15 C 1.52913 * 108.75460 * 51.70765 * 14 13 2 16 16 C 1.50768 * 109.81793 * 50.91145 * 15 14 13 17 17 N 1.30894 * 118.86751 * 162.89071 * 16 15 14 18 18 N 1.28218 * 122.70547 * 179.75491 * 17 16 15 19 19 C 1.46506 * 119.14929 * 179.54419 * 18 17 16 20 20 C 1.34680 * 121.69937 * 359.82176 * 18 17 16 21 21 O 1.22057 * 120.45345 * 180.28357 * 20 18 17 22 22 C 1.41135 * 119.09893 * 0.31056 * 20 18 17 23 23 C 1.36728 * 117.85350 * 359.87927 * 22 20 18 24 24 C 1.46739 * 111.00122 * 170.17797 * 13 2 1 25 25 H 1.09000 * 109.47030 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46992 * 299.99944 * 1 2 3 27 27 H 1.08999 * 109.47018 * 59.99176 * 1 2 3 28 28 H 1.09004 * 109.47279 * 315.36339 * 4 2 1 29 29 H 1.08996 * 109.47258 * 75.36274 * 4 2 1 30 30 H 0.96997 * 120.00359 * 180.02562 * 8 7 5 31 31 H 1.08997 * 109.59608 * 291.92080 * 14 13 2 32 32 H 1.09003 * 109.70750 * 171.55688 * 14 13 2 33 33 H 1.09005 * 109.41248 * 290.80986 * 15 14 13 34 34 H 1.09001 * 109.35809 * 170.98454 * 15 14 13 35 35 H 1.09001 * 109.46851 * 359.97438 * 19 18 17 36 36 H 1.08993 * 109.47074 * 119.99945 * 19 18 17 37 37 H 1.09007 * 109.46812 * 240.00077 * 19 18 17 38 38 H 1.07994 * 121.06853 * 179.91077 * 22 20 18 39 39 H 1.08997 * 109.32834 * 49.14583 * 24 13 2 40 40 H 1.08997 * 109.33454 * 168.81347 * 24 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.4992 -0.4038 1.4521 6 1 3.9888 0.3170 0.8140 7 6 4.2091 -1.0334 2.4523 8 7 3.6128 -1.9109 3.2297 9 14 6.0179 -0.6403 2.7034 10 1 6.4474 0.3728 1.7062 11 1 6.2223 -0.1037 4.0730 12 1 6.8218 -1.8769 2.5312 13 7 2.0196 -0.6924 -1.1995 14 6 1.3128 -0.2265 -2.4026 15 6 1.3748 1.3007 -2.4488 16 6 2.8001 1.7600 -2.2738 17 7 3.1163 2.9833 -2.6155 18 7 4.3037 3.4517 -2.4938 19 6 4.5732 4.8302 -2.9103 20 6 5.3107 2.7073 -1.9981 21 8 6.4314 3.1779 -1.8874 22 6 5.0525 1.3755 -1.6089 23 6 3.7777 0.9032 -1.7540 24 6 3.4676 -0.5129 -1.3561 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5140 -0.8899 28 1 1.4717 -0.3893 2.1180 29 1 1.9163 -1.7969 1.1235 30 1 4.1122 -2.3536 3.9336 31 1 0.2724 -0.5490 -2.3633 32 1 1.7897 -0.6386 -3.2919 33 1 0.7606 1.7126 -1.6480 34 1 0.9974 1.6487 -3.4103 35 1 3.6559 5.2813 -3.2886 36 1 4.9354 5.4033 -2.0569 37 1 5.3290 4.8311 -3.6958 38 1 5.8366 0.7498 -1.2088 39 1 3.9633 -0.7394 -0.4122 40 1 3.8338 -1.1902 -2.1277 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000515655919.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:23:14 Heat of formation + Delta-G solvation = 41.282104 kcal Electronic energy + Delta-G solvation = -22797.349489 eV Core-core repulsion = 19613.814025 eV Total energy + Delta-G solvation = -3183.535464 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.93866 -39.30472 -37.30697 -34.74758 -33.42092 -32.39755 -31.30121 -29.46767 -28.36079 -27.05162 -24.77101 -24.56842 -22.94034 -22.50733 -21.37657 -18.74575 -18.00626 -17.10283 -16.71838 -16.41414 -15.87646 -15.34241 -14.64699 -14.43797 -14.34769 -13.99491 -13.34468 -13.22097 -13.07143 -12.77485 -12.51894 -12.42765 -12.04656 -11.99491 -11.68131 -11.39489 -11.37279 -11.27268 -11.04131 -10.79927 -10.48478 -10.43126 -10.24021 -9.58787 -9.46055 -9.17092 -9.02749 -8.41448 -8.15385 -7.75645 -6.09098 -4.08979 0.79294 1.81286 2.41630 3.26613 3.36393 3.41102 3.61378 4.13936 4.38835 4.50918 4.73008 4.94176 4.95915 5.16299 5.18049 5.22809 5.31165 5.41739 5.47021 5.68984 5.78917 5.80719 5.84022 5.88359 6.01582 6.08276 6.09984 6.13426 6.29777 6.37155 6.44254 6.74581 6.90628 6.94228 7.40557 7.60406 7.65634 7.85676 7.91609 8.03202 8.32404 8.34226 8.94906 9.51439 11.01045 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014471 B = 0.008324 C = 0.005785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.485050 B = 3362.944453 C = 4838.676800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.079 3.921 3 H 0.033 0.967 4 C 0.028 3.972 5 C -0.524 4.524 6 H 0.062 0.938 7 C 0.065 3.935 8 N -0.884 5.884 9 Si 0.876 3.124 10 H -0.269 1.269 11 H -0.283 1.283 12 H -0.281 1.281 13 N -0.506 5.506 14 C 0.046 3.954 15 C -0.090 4.090 16 C 0.080 3.920 17 N -0.239 5.239 18 N -0.352 5.352 19 C 0.089 3.911 20 C 0.478 3.522 21 O -0.547 6.547 22 C -0.200 4.200 23 C -0.040 4.040 24 C 0.049 3.951 25 H 0.060 0.940 26 H 0.054 0.946 27 H 0.046 0.954 28 H 0.018 0.982 29 H 0.036 0.964 30 H 0.261 0.739 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.161 0.839 39 H 0.165 0.835 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.883 6.547 -12.777 15.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.028 4.028 3 H 0.051 0.949 4 C -0.009 4.009 5 C -0.562 4.562 6 H 0.080 0.920 7 C -0.138 4.138 8 N -0.522 5.522 9 Si 0.703 3.297 10 H -0.193 1.193 11 H -0.209 1.209 12 H -0.207 1.207 13 N -0.227 5.227 14 C -0.083 4.083 15 C -0.131 4.131 16 C -0.092 4.092 17 N -0.063 5.063 18 N -0.171 5.171 19 C -0.052 4.052 20 C 0.279 3.721 21 O -0.427 6.427 22 C -0.230 4.230 23 C -0.047 4.047 24 C -0.079 4.079 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.036 0.964 29 H 0.054 0.946 30 H 0.071 0.929 31 H 0.107 0.893 32 H 0.091 0.909 33 H 0.110 0.890 34 H 0.102 0.898 35 H 0.113 0.887 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.179 0.821 39 H 0.182 0.818 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.614 7.032 -12.841 15.350 hybrid contribution 1.739 0.627 0.495 1.913 sum -2.875 7.659 -12.346 14.811 Atomic orbital electron populations 1.22069 0.96248 1.01938 1.00568 1.21920 0.93138 0.95983 0.91758 0.94933 1.19181 0.95215 0.96870 0.89683 1.21311 0.95699 1.23665 1.15505 0.92042 1.24975 0.98002 0.95013 0.95781 1.69959 1.36250 1.26714 1.19262 0.86775 0.85760 0.78538 0.78597 1.19297 1.20923 1.20700 1.62601 1.02651 1.55754 1.01742 1.22363 1.00904 0.90462 0.94570 1.21012 0.89258 0.99098 1.03705 1.21575 0.97980 0.88663 1.00944 1.70762 1.04383 1.15989 1.15138 1.46475 1.04949 1.14565 1.51139 1.22007 1.03108 0.78324 1.01722 1.18072 0.85289 0.88161 0.80624 1.90932 1.20998 1.73870 1.56928 1.22570 0.98840 0.95019 1.06593 1.21715 0.92547 1.00253 0.90203 1.22333 0.90959 0.87680 1.06928 0.92091 0.92678 0.93483 0.96426 0.94569 0.92887 0.89325 0.90917 0.88954 0.89788 0.88654 0.90017 0.90112 0.82096 0.81834 0.89542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 8.17 37.16 0.30 -2.01 16 2 C 0.08 1.48 1.56 -67.71 -0.11 1.38 16 3 H 0.03 0.66 5.93 -51.93 -0.31 0.35 16 4 C 0.03 0.66 4.59 -27.89 -0.13 0.53 16 5 C -0.52 -13.44 6.60 -34.44 -0.23 -13.67 16 6 H 0.06 1.54 5.55 -52.48 -0.29 1.25 16 7 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.88 -25.18 13.29 55.43 0.74 -24.45 16 9 Si 0.88 20.91 29.54 -169.99 -5.02 15.89 16 10 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 N -0.51 -8.54 4.87 -228.33 -1.11 -9.65 16 14 C 0.05 0.59 5.35 -3.75 -0.02 0.57 16 15 C -0.09 -1.14 5.21 -27.89 -0.15 -1.29 16 16 C 0.08 1.24 6.06 -82.30 -0.50 0.75 16 17 N -0.24 -3.72 10.72 33.72 0.36 -3.36 16 18 N -0.35 -5.64 3.62 -70.15 -0.25 -5.89 16 19 C 0.09 1.04 10.22 59.85 0.61 1.65 16 20 C 0.48 9.02 7.48 -15.20 -0.11 8.91 16 21 O -0.55 -11.59 17.10 4.87 0.08 -11.50 16 22 C -0.20 -3.68 9.65 -39.03 -0.38 -4.06 16 23 C -0.04 -0.68 4.60 -104.69 -0.48 -1.16 16 24 C 0.05 0.85 5.07 -5.24 -0.03 0.82 16 25 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 26 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.05 0.59 5.02 -51.93 -0.26 0.33 16 28 H 0.02 0.45 8.05 -51.93 -0.42 0.03 16 29 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 31 H 0.09 1.01 6.76 -51.93 -0.35 0.65 16 32 H 0.07 0.85 8.05 -51.93 -0.42 0.43 16 33 H 0.09 1.20 5.57 -51.93 -0.29 0.91 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.09 0.86 8.05 -51.93 -0.42 0.45 16 36 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.16 2.92 8.06 -52.49 -0.42 2.50 16 39 H 0.17 3.42 3.97 -51.93 -0.21 3.22 16 40 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 310.78 15.07 4.68 4.68 Total: -1.00 -30.93 310.78 -7.30 -38.23 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -5.48 Total: 1.97 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: -1.30 Total: -5.92 kcal Atomic # 7 Polarization: -43.08 SS G_CDS: -0.27 Total: -43.35 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: 0.08 Total: -11.50 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.93 -7.30 -38.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000515655919.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.515 kcal (2) G-P(sol) polarization free energy of solvation -30.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds