Wall clock time and date at job start Mon Mar 30 2020 20:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50704 * 120.00268 * 2 1 4 4 N 1.46496 * 109.47574 * 124.99480 * 3 2 1 5 5 C 1.46498 * 120.00316 * 275.49770 * 4 3 2 6 6 C 1.50698 * 109.46894 * 264.14685 * 5 4 3 7 7 H 1.08004 * 120.00211 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99965 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00197 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99991 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47089 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.47055 * 120.00445 * 10 8 6 13 13 H 1.48500 * 109.47285 * 240.00581 * 10 8 6 14 14 C 1.34776 * 119.99719 * 95.49038 * 4 3 2 15 15 O 1.21283 * 120.00166 * 3.83044 * 14 4 3 16 16 C 1.50709 * 119.99825 * 183.82762 * 14 4 3 17 17 H 1.08992 * 109.46958 * 318.56974 * 16 14 4 18 18 C 1.52998 * 109.46845 * 78.57427 * 16 14 4 19 19 C 1.53002 * 109.47039 * 198.56915 * 16 14 4 20 20 C 1.50695 * 109.47011 * 175.00110 * 19 16 14 21 21 C 1.34665 * 126.59061 * 84.97745 * 20 19 16 22 22 N 1.34139 * 108.02043 * 180.02562 * 21 20 19 23 23 C 1.30493 * 109.25483 * 359.97438 * 22 21 20 24 24 N 1.35043 * 108.70059 * 0.02562 * 23 22 21 25 25 H 0.97010 * 126.39730 * 179.97438 * 24 23 22 26 26 H 1.08005 * 120.00163 * 0.02562 * 1 2 3 27 27 H 1.07999 * 120.00263 * 180.02562 * 1 2 3 28 28 H 1.08005 * 120.00163 * 179.97438 * 2 1 3 29 29 H 1.09002 * 109.46865 * 4.99712 * 3 2 1 30 30 H 1.09001 * 109.46987 * 244.99735 * 3 2 1 31 31 H 1.08997 * 109.46995 * 24.14678 * 5 4 3 32 32 H 1.08993 * 109.47448 * 144.14606 * 5 4 3 33 33 H 0.96996 * 120.00492 * 179.97438 * 9 8 6 34 34 H 1.09001 * 109.47372 * 304.82149 * 18 16 14 35 35 H 1.08994 * 109.47742 * 64.82389 * 18 16 14 36 36 H 1.09001 * 109.47121 * 184.82758 * 18 16 14 37 37 H 1.08999 * 109.46777 * 55.00321 * 19 16 14 38 38 H 1.09000 * 109.47465 * 295.00534 * 19 16 14 39 39 H 1.08000 * 125.99377 * 0.02562 * 21 20 19 40 40 H 1.08002 * 125.65021 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.5258 1.7519 2.4547 6 6 2.8325 3.2136 2.6554 7 1 3.3263 3.7739 1.8751 8 6 2.4819 3.8360 3.8347 9 7 1.8803 3.1539 4.7846 10 14 2.8628 5.6477 4.0838 11 1 3.5391 6.1822 2.8746 12 1 1.5986 6.3923 4.3132 13 1 3.7531 5.8091 5.2613 14 6 4.2800 0.9703 0.9550 15 8 4.6844 0.6894 -0.1534 16 6 5.2158 0.9149 2.1351 17 1 5.0373 1.7746 2.7809 18 6 4.9690 -0.3740 2.9215 19 6 6.6632 0.9409 1.6398 20 6 7.5970 1.0095 2.8206 21 6 8.0522 -0.0302 3.5454 22 7 8.8563 0.4529 4.5042 23 6 8.9171 1.7523 4.4006 24 7 8.1453 2.1405 3.3627 25 1 8.0055 3.0508 3.0581 26 1 -0.5401 0.9353 -0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3586 2.1316 0.0895 30 1 2.6213 1.4025 -0.9314 31 1 1.4498 1.5932 2.5268 32 1 3.0317 1.1658 3.2218 33 1 1.6340 3.5916 5.6144 34 1 3.9171 -0.4334 3.2010 35 1 5.2296 -1.2327 2.3029 36 1 5.5844 -0.3742 3.8212 37 1 6.8145 1.8145 1.0057 38 1 6.8675 0.0364 1.0669 39 1 7.8119 -1.0705 3.3832 40 1 9.4891 2.4086 5.0397 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565314466.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:23:39 Heat of formation + Delta-G solvation = 28.893827 kcal Electronic energy + Delta-G solvation = -21887.431472 eV Core-core repulsion = 18703.358812 eV Total energy + Delta-G solvation = -3184.072660 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.86727 -39.39956 -35.68028 -34.63461 -33.36027 -32.29906 -32.12782 -29.54487 -27.57822 -26.33050 -25.74685 -23.34419 -22.17933 -21.16763 -20.58706 -19.67003 -18.09269 -17.62490 -16.78065 -16.12445 -15.73597 -14.88749 -14.78557 -14.51088 -14.33364 -14.19244 -13.56849 -13.40875 -13.00679 -12.85366 -12.48238 -12.17668 -12.17465 -11.70402 -11.55257 -11.37838 -11.10687 -10.95836 -10.91920 -10.71061 -10.58222 -10.23529 -9.83763 -9.80983 -9.79042 -9.24155 -8.87763 -8.61234 -8.13228 -7.78489 -6.25494 -4.33267 2.22525 2.53952 3.13067 3.22463 3.24541 3.30884 3.33554 3.38317 4.01950 4.26241 4.82054 5.02852 5.07510 5.22636 5.31608 5.35157 5.45405 5.53556 5.60027 5.77800 5.84890 5.94321 6.04710 6.09539 6.16688 6.26377 6.30701 6.45241 6.55305 6.64719 6.73928 6.89334 6.92177 7.03222 7.18743 7.50457 7.53707 7.69780 7.99685 8.22162 8.27804 8.72374 8.96655 9.34560 10.81052 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.011584 B = 0.007168 C = 0.004955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.595811 B = 3905.478687 C = 5649.606695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.155 4.155 3 C 0.140 3.860 4 N -0.590 5.590 5 C 0.234 3.766 6 C -0.540 4.540 7 H 0.060 0.940 8 C 0.066 3.934 9 N -0.887 5.887 10 Si 0.893 3.107 11 H -0.273 1.273 12 H -0.281 1.281 13 H -0.282 1.282 14 C 0.524 3.476 15 O -0.578 6.578 16 C -0.105 4.105 17 H 0.112 0.888 18 C -0.139 4.139 19 C -0.025 4.025 20 C -0.004 4.004 21 C -0.029 4.029 22 N -0.497 5.497 23 C 0.174 3.826 24 N -0.565 5.565 25 H 0.419 0.581 26 H 0.097 0.903 27 H 0.093 0.907 28 H 0.103 0.897 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.036 0.964 32 H 0.044 0.956 33 H 0.265 0.735 34 H 0.065 0.935 35 H 0.053 0.947 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.092 0.908 39 H 0.167 0.833 40 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.834 -2.847 -3.596 7.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.175 4.175 3 C 0.017 3.983 4 N -0.320 5.320 5 C 0.114 3.886 6 C -0.578 4.578 7 H 0.078 0.922 8 C -0.137 4.137 9 N -0.525 5.525 10 Si 0.721 3.279 11 H -0.197 1.197 12 H -0.207 1.207 13 H -0.208 1.208 14 C 0.313 3.687 15 O -0.459 6.459 16 C -0.126 4.126 17 H 0.130 0.870 18 C -0.197 4.197 19 C -0.064 4.064 20 C -0.120 4.120 21 C -0.176 4.176 22 N -0.216 5.216 23 C -0.110 4.110 24 N -0.168 5.168 25 H 0.257 0.743 26 H 0.115 0.885 27 H 0.111 0.889 28 H 0.121 0.879 29 H 0.097 0.903 30 H 0.102 0.898 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.110 0.890 39 H 0.184 0.816 40 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 6.362 -3.480 -3.349 7.987 hybrid contribution -0.539 2.089 -0.247 2.172 sum 5.822 -1.391 -3.595 6.983 Atomic orbital electron populations 1.23766 0.95790 1.01563 1.01826 1.23369 0.96082 0.99231 0.98779 1.20433 0.92333 0.94641 0.90938 1.48196 1.08214 1.63618 1.11937 1.19529 0.96315 0.95177 0.77581 1.21524 1.39965 0.94951 1.01408 0.92174 1.24936 0.94765 0.98307 0.95720 1.69923 1.39844 1.36364 1.06349 0.86516 0.78341 0.84925 0.78151 1.19725 1.20737 1.20839 1.20423 0.82787 0.75903 0.89609 1.90578 1.76868 1.52048 1.26422 1.21226 0.92535 1.02227 0.96612 0.86996 1.21783 1.02866 0.95177 0.99843 1.19879 0.90524 1.04095 0.91915 1.21351 1.02814 0.86587 1.01297 1.22036 1.01082 0.98953 0.95569 1.70236 1.20113 1.07767 1.23499 1.24851 0.99769 0.93137 0.93194 1.43316 1.37414 1.09770 1.26286 0.74287 0.88481 0.88872 0.87861 0.90264 0.89822 0.94542 0.93819 0.92506 0.91602 0.92791 0.91426 0.91036 0.88989 0.81599 0.77966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.73 14.32 29.02 0.42 -2.31 16 2 C -0.16 -2.51 9.84 -36.02 -0.35 -2.86 16 3 C 0.14 2.54 5.91 -5.19 -0.03 2.51 16 4 N -0.59 -12.04 2.46 -176.44 -0.43 -12.48 16 5 C 0.23 5.37 4.80 -5.20 -0.02 5.34 16 6 C -0.54 -13.53 8.55 -34.44 -0.29 -13.83 16 7 H 0.06 1.54 7.81 -52.48 -0.41 1.13 16 8 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 9 N -0.89 -23.88 13.29 55.43 0.74 -23.14 16 10 Si 0.89 19.89 29.54 -169.99 -5.02 14.87 16 11 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 12 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 13 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 14 C 0.52 10.45 6.79 -10.98 -0.07 10.38 16 15 O -0.58 -12.36 15.60 5.55 0.09 -12.28 16 16 C -0.10 -1.84 1.87 -91.77 -0.17 -2.01 16 17 H 0.11 2.23 6.57 -51.93 -0.34 1.89 16 18 C -0.14 -2.24 8.41 37.16 0.31 -1.93 16 19 C -0.03 -0.38 4.61 -27.88 -0.13 -0.51 16 20 C 0.00 -0.06 6.09 -81.61 -0.50 -0.56 16 21 C -0.03 -0.43 10.20 -17.81 -0.18 -0.62 16 22 N -0.50 -7.78 11.25 -14.66 -0.16 -7.94 16 23 C 0.17 2.23 13.04 -90.38 -1.18 1.05 16 24 N -0.56 -7.19 6.15 -10.30 -0.06 -7.25 16 25 H 0.42 4.31 8.96 -40.82 -0.37 3.95 16 26 H 0.10 1.34 7.84 -52.48 -0.41 0.93 16 27 H 0.09 1.15 8.06 -52.49 -0.42 0.73 16 28 H 0.10 1.66 8.06 -52.48 -0.42 1.24 16 29 H 0.08 1.43 7.76 -51.93 -0.40 1.02 16 30 H 0.08 1.53 7.22 -51.93 -0.37 1.15 16 31 H 0.04 0.90 8.03 -51.93 -0.42 0.48 16 32 H 0.04 1.03 5.05 -51.93 -0.26 0.77 16 33 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 34 H 0.07 1.14 6.44 -51.93 -0.33 0.81 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.07 1.05 6.51 -51.93 -0.34 0.72 16 37 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.09 1.36 8.07 -51.93 -0.42 0.95 16 39 H 0.17 2.23 8.06 -52.49 -0.42 1.80 16 40 H 0.20 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 336.59 15.07 5.07 5.07 Total: -1.00 -30.01 336.59 -7.84 -37.86 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -5.75 Total: 9.03 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: -2.31 Total: -3.75 kcal Atomic # 7 Polarization: -50.88 SS G_CDS: 0.07 Total: -50.80 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: 0.09 Total: -12.28 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.01 -7.84 -37.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565314466.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.750 kcal (2) G-P(sol) polarization free energy of solvation -30.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds