Wall clock time and date at job start Mon Mar 30 2020 20:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42899 * 109.47124 * 2 1 4 4 C 1.42901 * 113.99851 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.47406 * 330.00073 * 4 3 2 6 6 C 1.53005 * 109.46811 * 89.99897 * 4 3 2 7 7 C 1.50697 * 109.47223 * 209.99568 * 4 3 2 8 8 N 1.30495 * 125.65278 * 314.74357 * 7 4 3 9 9 C 1.34127 * 109.25591 * 180.02562 * 8 7 4 10 10 C 1.34672 * 108.02308 * 359.73338 * 9 8 7 11 11 N 1.35048 * 125.64724 * 134.77918 * 7 4 3 12 12 C 1.46504 * 126.39646 * 359.96682 * 11 7 4 13 13 C 1.52999 * 109.47128 * 275.64389 * 12 11 7 14 14 H 1.08996 * 109.47166 * 54.57211 * 13 12 11 15 15 C 1.47202 * 109.47056 * 294.56817 * 13 12 11 16 16 N 6.67051 * 118.12500 * 63.95743 * 2 1 3 17 17 C 1.53005 * 109.46910 * 174.56819 * 13 12 11 18 18 C 1.50697 * 109.47003 * 184.99738 * 17 13 12 19 19 H 1.08004 * 120.00328 * 0.02562 * 18 17 13 20 20 C 1.37872 * 120.00210 * 180.02562 * 18 17 13 21 21 N 1.31516 * 119.99840 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 120.00558 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.46540 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47121 * 119.99829 * 22 20 18 25 25 H 1.48497 * 109.47344 * 240.00292 * 22 20 18 26 26 H 1.09011 * 109.47120 * 60.00080 * 1 2 3 27 27 H 1.09002 * 109.47291 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47382 * 300.00311 * 1 2 3 29 29 H 1.09000 * 109.47041 * 239.99847 * 2 1 3 30 30 H 1.08997 * 109.47111 * 119.99839 * 2 1 3 31 31 H 1.08996 * 109.47497 * 295.03461 * 6 4 3 32 32 H 1.09000 * 109.46843 * 55.04058 * 6 4 3 33 33 H 1.09003 * 109.47029 * 175.03433 * 6 4 3 34 34 H 1.08001 * 125.98824 * 180.02562 * 9 8 7 35 35 H 1.07996 * 126.59594 * 180.28399 * 10 9 8 36 36 H 1.08998 * 109.46928 * 155.64383 * 12 11 7 37 37 H 1.08994 * 109.47165 * 35.64617 * 12 11 7 38 38 H 1.08994 * 109.46828 * 304.99996 * 17 13 12 39 39 H 1.09003 * 109.47001 * 65.00271 * 17 13 12 40 40 H 0.97002 * 120.00293 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8631 0.6017 0.5147 6 6 3.9398 1.5001 -1.4418 7 6 3.8342 2.7265 0.7109 8 7 3.2898 3.9002 0.5411 9 6 3.9017 4.7908 1.3358 10 6 4.8579 4.1431 2.0285 11 7 4.8195 2.8348 1.6281 12 6 5.6819 1.7527 2.1094 13 6 4.9735 0.9991 3.2368 14 1 3.9962 0.6627 2.8909 15 6 4.8036 1.8934 4.3936 16 7 4.6745 2.5828 5.2856 17 6 5.8138 -0.2119 3.6473 18 6 5.0605 -1.0223 4.6705 19 1 4.0804 -0.7056 4.9952 20 6 5.6226 -2.1681 5.1922 21 7 6.8164 -2.5535 4.7972 22 14 4.6887 -3.1731 6.4600 23 1 3.3776 -2.5310 6.7323 24 1 4.4681 -4.5459 5.9386 25 1 5.4774 -3.2415 7.7163 26 1 -0.3634 0.5139 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.7256 0.5490 -1.9293 32 1 3.4408 2.3053 -1.9809 33 1 5.0158 1.6745 -1.4427 34 1 3.6655 5.8419 1.4108 35 1 5.5279 4.5737 2.7579 36 1 6.6161 2.1717 2.4833 37 1 5.8941 1.0656 1.2903 38 1 6.0144 -0.8286 2.7713 39 1 6.7565 0.1284 4.0758 40 1 7.2117 -3.3598 5.1639 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152003769.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:16:49 Heat of formation + Delta-G solvation = 25.806240 kcal Electronic energy + Delta-G solvation = -21635.895363 eV Core-core repulsion = 18451.688815 eV Total energy + Delta-G solvation = -3184.206548 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.02226 -38.17924 -37.09770 -34.59446 -33.27835 -32.82744 -31.30486 -30.27035 -28.51336 -27.14664 -24.34171 -23.60767 -22.67255 -22.06887 -21.11710 -19.65212 -17.55943 -16.81712 -16.63265 -16.34030 -15.66850 -15.27434 -14.91790 -14.65366 -14.03650 -13.71158 -13.52371 -13.16040 -13.13492 -12.99654 -12.72703 -12.56673 -12.26983 -12.04089 -11.95084 -11.70434 -11.65194 -11.36540 -11.26945 -11.01581 -10.86450 -10.72848 -10.56472 -9.99595 -9.76211 -9.59358 -9.54357 -9.23832 -8.61473 -8.25280 -6.25599 -4.29934 2.11294 2.77866 3.18720 3.27658 3.27973 3.32284 3.37380 3.47361 3.79802 4.28241 4.40670 4.43605 4.81335 4.95213 5.04435 5.08530 5.10871 5.13211 5.18456 5.27485 5.39853 5.42357 5.48924 5.56624 5.70707 5.76581 5.88263 5.92362 5.96130 6.11099 6.13786 6.15248 6.45815 6.89708 7.15281 7.16899 7.25590 7.32825 7.68897 8.02537 8.20489 8.29392 8.74137 9.37127 10.85039 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014371 B = 0.005601 C = 0.004636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.942517 B = 4998.217303 C = 6038.565613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.051 3.949 3 O -0.364 6.364 4 C 0.175 3.825 5 H 0.080 0.920 6 C -0.164 4.164 7 C 0.203 3.797 8 N -0.468 5.468 9 C -0.036 4.036 10 C -0.045 4.045 11 N -0.448 5.448 12 C 0.104 3.896 13 C -0.007 4.007 14 H 0.105 0.895 15 C 0.236 3.764 16 N -0.456 5.456 17 C 0.034 3.966 18 C -0.530 4.530 19 H 0.058 0.942 20 C 0.066 3.934 21 N -0.889 5.889 22 Si 0.892 3.108 23 H -0.272 1.272 24 H -0.281 1.281 25 H -0.282 1.282 26 H 0.061 0.939 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.050 0.950 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.167 0.833 35 H 0.170 0.830 36 H 0.102 0.898 37 H 0.111 0.889 38 H 0.042 0.958 39 H 0.030 0.970 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.792 5.150 -12.384 13.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.025 4.025 3 O -0.282 6.282 4 C 0.115 3.885 5 H 0.098 0.902 6 C -0.223 4.223 7 C -0.059 4.059 8 N -0.186 5.186 9 C -0.185 4.185 10 C -0.179 4.179 11 N -0.131 5.131 12 C -0.019 4.019 13 C -0.029 4.029 14 H 0.123 0.877 15 C -0.081 4.081 16 N -0.133 5.133 17 C -0.005 4.005 18 C -0.568 4.568 19 H 0.076 0.924 20 C -0.137 4.137 21 N -0.527 5.527 22 Si 0.720 3.280 23 H -0.196 1.196 24 H -0.207 1.207 25 H -0.208 1.208 26 H 0.080 0.920 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.184 0.816 35 H 0.187 0.813 36 H 0.120 0.880 37 H 0.129 0.871 38 H 0.060 0.940 39 H 0.049 0.951 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.544 6.272 -11.499 13.864 hybrid contribution 0.531 -1.245 1.217 1.820 sum -4.012 5.027 -10.282 12.128 Atomic orbital electron populations 1.21713 0.93711 1.02107 1.03087 1.22610 0.95749 0.83621 1.00541 1.88049 1.18901 1.26285 1.94962 1.20019 0.82924 0.90816 0.94728 0.90238 1.22212 1.01495 1.03119 0.95436 1.22750 0.91560 0.96146 0.95455 1.70196 1.25974 0.98743 1.23705 1.22263 0.97458 0.99716 0.99057 1.22704 1.05793 0.83980 1.05400 1.45527 1.27751 1.08837 1.31004 1.22230 0.93394 0.88265 0.98033 1.19641 1.03238 0.93725 0.86304 0.87712 1.28816 0.92606 0.92410 0.94283 1.80984 1.09287 1.12042 1.10946 1.19192 0.94613 0.88603 0.98054 1.21090 1.03378 1.08547 1.23809 0.92403 1.24931 0.94871 0.97379 0.96544 1.69929 1.15149 1.24399 1.43255 0.86520 0.80163 0.80025 0.81341 1.19630 1.20669 1.20815 0.91989 0.91112 0.91831 0.93210 0.92621 0.91610 0.90832 0.91548 0.81593 0.81265 0.87975 0.87121 0.93966 0.95129 0.92635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 10.28 37.16 0.38 -1.14 16 2 C 0.05 0.59 6.47 37.16 0.24 0.83 16 3 O -0.36 -5.25 9.97 -35.23 -0.35 -5.60 16 4 C 0.18 2.30 3.02 -27.88 -0.08 2.21 16 5 H 0.08 0.95 6.78 -51.93 -0.35 0.59 16 6 C -0.16 -1.77 9.51 37.16 0.35 -1.41 16 7 C 0.20 3.11 6.79 -155.42 -1.05 2.06 16 8 N -0.47 -7.91 11.25 -10.82 -0.12 -8.04 16 9 C -0.04 -0.54 11.87 -17.81 -0.21 -0.76 16 10 C -0.05 -0.65 11.12 -16.56 -0.18 -0.83 16 11 N -0.45 -6.44 2.55 -113.91 -0.29 -6.73 16 12 C 0.10 1.38 4.97 -4.04 -0.02 1.36 16 13 C -0.01 -0.11 2.42 -93.40 -0.23 -0.34 16 14 H 0.11 1.78 8.07 -51.93 -0.42 1.36 16 15 C 0.24 4.67 13.27 -20.80 -0.28 4.40 16 16 N -0.46 -9.81 18.53 42.10 0.78 -9.03 16 17 C 0.03 0.71 4.42 -27.88 -0.12 0.59 16 18 C -0.53 -13.33 8.60 -34.44 -0.30 -13.63 16 19 H 0.06 1.48 7.59 -52.48 -0.40 1.08 16 20 C 0.07 1.71 5.46 -17.82 -0.10 1.62 16 21 N -0.89 -24.08 13.29 55.43 0.74 -23.35 16 22 Si 0.89 20.50 29.54 -169.99 -5.02 15.48 16 23 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.48 7.99 -51.93 -0.41 0.06 16 30 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 31 H 0.06 0.59 7.99 -51.93 -0.41 0.17 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.17 2.04 8.06 -52.49 -0.42 1.62 16 35 H 0.17 2.11 8.06 -52.49 -0.42 1.69 16 36 H 0.10 1.23 8.13 -51.93 -0.42 0.81 16 37 H 0.11 1.20 7.60 -51.93 -0.39 0.80 16 38 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 LS Contribution 348.30 15.07 5.25 5.25 Total: -1.00 -31.26 348.30 -6.79 -38.05 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -6.18 Total: -0.98 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -1.60 Total: -5.05 kcal Atomic # 7 Polarization: -48.25 SS G_CDS: 1.10 Total: -47.15 kcal Atomic # 8 Polarization: -5.25 SS G_CDS: -0.35 Total: -5.60 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.26 -6.79 -38.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152003769.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.860 kcal (2) G-P(sol) polarization free energy of solvation -31.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds