Wall clock time and date at job start Mon Mar 30 2020 20:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42899 * 109.47124 * 2 1 4 4 C 1.42901 * 113.99851 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.47406 * 330.00073 * 4 3 2 6 6 C 1.53005 * 109.46811 * 89.99897 * 4 3 2 7 7 C 1.50697 * 109.47223 * 209.99568 * 4 3 2 8 8 N 1.30495 * 125.65278 * 314.74357 * 7 4 3 9 9 C 1.34127 * 109.25591 * 180.02562 * 8 7 4 10 10 C 1.34672 * 108.02308 * 359.73338 * 9 8 7 11 11 N 1.35048 * 125.64724 * 134.77918 * 7 4 3 12 12 C 1.46504 * 126.39646 * 359.96682 * 11 7 4 13 13 C 1.52999 * 109.47128 * 275.64389 * 12 11 7 14 14 H 1.08996 * 109.47166 * 54.57211 * 13 12 11 15 15 C 1.47202 * 109.47056 * 294.56817 * 13 12 11 16 16 N 6.67051 * 118.12500 * 63.95743 * 2 1 3 17 17 C 1.53005 * 109.46910 * 174.56819 * 13 12 11 18 18 C 1.50697 * 109.47003 * 184.99738 * 17 13 12 19 19 H 1.08004 * 120.00328 * 0.02562 * 18 17 13 20 20 C 1.37872 * 120.00210 * 180.02562 * 18 17 13 21 21 N 1.31516 * 119.99840 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 120.00558 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.46540 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47121 * 119.99829 * 22 20 18 25 25 H 1.48497 * 109.47344 * 240.00292 * 22 20 18 26 26 H 1.09011 * 109.47120 * 60.00080 * 1 2 3 27 27 H 1.09002 * 109.47291 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47382 * 300.00311 * 1 2 3 29 29 H 1.09000 * 109.47041 * 239.99847 * 2 1 3 30 30 H 1.08997 * 109.47111 * 119.99839 * 2 1 3 31 31 H 1.08996 * 109.47497 * 295.03461 * 6 4 3 32 32 H 1.09000 * 109.46843 * 55.04058 * 6 4 3 33 33 H 1.09003 * 109.47029 * 175.03433 * 6 4 3 34 34 H 1.08001 * 125.98824 * 180.02562 * 9 8 7 35 35 H 1.07996 * 126.59594 * 180.28399 * 10 9 8 36 36 H 1.08998 * 109.46928 * 155.64383 * 12 11 7 37 37 H 1.08994 * 109.47165 * 35.64617 * 12 11 7 38 38 H 1.08994 * 109.46828 * 304.99996 * 17 13 12 39 39 H 1.09003 * 109.47001 * 65.00271 * 17 13 12 40 40 H 0.97002 * 120.00293 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8631 0.6017 0.5147 6 6 3.9398 1.5001 -1.4418 7 6 3.8342 2.7265 0.7109 8 7 3.2898 3.9002 0.5411 9 6 3.9017 4.7908 1.3358 10 6 4.8579 4.1431 2.0285 11 7 4.8195 2.8348 1.6281 12 6 5.6819 1.7527 2.1094 13 6 4.9735 0.9991 3.2368 14 1 3.9962 0.6627 2.8909 15 6 4.8036 1.8934 4.3936 16 7 4.6745 2.5828 5.2856 17 6 5.8138 -0.2119 3.6473 18 6 5.0605 -1.0223 4.6705 19 1 4.0804 -0.7056 4.9952 20 6 5.6226 -2.1681 5.1922 21 7 6.8164 -2.5535 4.7972 22 14 4.6887 -3.1731 6.4600 23 1 3.3776 -2.5310 6.7323 24 1 4.4681 -4.5459 5.9386 25 1 5.4774 -3.2415 7.7163 26 1 -0.3634 0.5139 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.7256 0.5490 -1.9293 32 1 3.4408 2.3053 -1.9809 33 1 5.0158 1.6745 -1.4427 34 1 3.6655 5.8419 1.4108 35 1 5.5279 4.5737 2.7579 36 1 6.6161 2.1717 2.4833 37 1 5.8941 1.0656 1.2903 38 1 6.0144 -0.8286 2.7713 39 1 6.7565 0.1284 4.0758 40 1 7.2117 -3.3598 5.1639 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152003769.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:16:49 Heat of formation + Delta-G solvation = 8.529185 kcal Electronic energy + Delta-G solvation = -21636.644552 eV Core-core repulsion = 18451.688815 eV Total energy + Delta-G solvation = -3184.955737 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.13633 -39.14593 -38.59350 -36.10220 -34.97967 -33.73773 -32.85245 -31.17643 -29.56603 -28.71132 -25.75491 -24.61466 -23.75349 -23.56883 -22.21076 -20.76498 -18.94425 -18.40155 -17.80117 -17.59615 -16.75833 -16.56967 -16.23373 -16.02879 -15.18956 -15.01098 -14.81166 -14.48491 -14.31740 -14.10688 -13.97721 -13.89951 -13.48615 -13.36609 -13.16116 -12.96117 -12.82926 -12.71460 -12.57539 -12.51289 -12.22555 -12.17354 -11.79544 -11.66001 -11.35687 -10.91231 -10.58379 -10.54440 -10.53268 -9.36141 -8.23678 -6.31051 0.99292 1.36535 1.41608 1.49918 1.69048 1.82219 1.89719 2.15767 2.38953 2.84133 3.00801 3.13955 3.43326 3.81177 3.83993 3.90400 4.07438 4.17919 4.26526 4.31886 4.42576 4.52293 4.57955 4.59013 4.67660 4.71488 4.76345 4.92019 4.99827 5.09704 5.28014 5.32265 5.36882 5.40300 5.53523 5.73391 5.81458 6.10621 6.17310 6.34318 6.62702 6.81277 7.17609 7.38020 8.86767 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014371 B = 0.005601 C = 0.004636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.942517 B = 4998.217303 C = 6038.565613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.045 3.955 3 O -0.390 6.390 4 C 0.169 3.831 5 H 0.092 0.908 6 C -0.157 4.157 7 C 0.197 3.803 8 N -0.503 5.503 9 C -0.051 4.051 10 C -0.049 4.049 11 N -0.448 5.448 12 C 0.110 3.890 13 C 0.005 3.995 14 H 0.109 0.891 15 C 0.244 3.756 16 N -0.490 5.490 17 C 0.042 3.958 18 C -0.541 4.541 19 H 0.047 0.953 20 C 0.021 3.979 21 N -0.916 5.916 22 Si 0.940 3.060 23 H -0.275 1.275 24 H -0.271 1.271 25 H -0.285 1.285 26 H 0.063 0.937 27 H 0.091 0.909 28 H 0.047 0.953 29 H 0.072 0.928 30 H 0.051 0.949 31 H 0.086 0.914 32 H 0.057 0.943 33 H 0.077 0.923 34 H 0.184 0.816 35 H 0.185 0.815 36 H 0.118 0.882 37 H 0.142 0.858 38 H 0.051 0.949 39 H 0.014 0.986 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.648 4.507 -13.332 14.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.031 4.031 3 O -0.309 6.309 4 C 0.109 3.891 5 H 0.110 0.890 6 C -0.215 4.215 7 C -0.065 4.065 8 N -0.222 5.222 9 C -0.199 4.199 10 C -0.182 4.182 11 N -0.131 5.131 12 C -0.013 4.013 13 C -0.017 4.017 14 H 0.127 0.873 15 C -0.073 4.073 16 N -0.167 5.167 17 C 0.003 3.997 18 C -0.579 4.579 19 H 0.065 0.935 20 C -0.179 4.179 21 N -0.556 5.556 22 Si 0.767 3.233 23 H -0.200 1.200 24 H -0.196 1.196 25 H -0.211 1.211 26 H 0.082 0.918 27 H 0.110 0.890 28 H 0.066 0.934 29 H 0.090 0.910 30 H 0.069 0.931 31 H 0.104 0.896 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.201 0.799 35 H 0.203 0.797 36 H 0.136 0.864 37 H 0.160 0.840 38 H 0.070 0.930 39 H 0.033 0.967 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.406 5.633 -12.450 14.357 hybrid contribution 0.447 -1.024 1.526 1.891 sum -3.959 4.609 -10.924 12.500 Atomic orbital electron populations 1.21740 0.93143 1.03247 1.02376 1.22796 0.96323 0.82627 1.01337 1.88019 1.19729 1.28010 1.95159 1.20275 0.82625 0.90195 0.95977 0.88975 1.22165 1.01856 1.03667 0.93825 1.23227 0.91346 0.96549 0.95408 1.70182 1.27178 0.99844 1.25009 1.22661 0.97608 1.00591 0.99019 1.23006 1.05789 0.84078 1.05362 1.45559 1.27795 1.08980 1.30796 1.22281 0.92934 0.88464 0.97601 1.19575 1.03221 0.92396 0.86541 0.87286 1.29381 0.91632 0.92025 0.94266 1.80982 1.10422 1.13360 1.11950 1.19001 0.93838 0.89602 0.97248 1.21457 1.03182 1.08855 1.24384 0.93472 1.25551 0.95610 0.98568 0.98175 1.69989 1.16134 1.24989 1.44447 0.85768 0.78842 0.79301 0.79413 1.19963 1.19604 1.21134 0.91799 0.89046 0.93420 0.91019 0.93094 0.89556 0.92366 0.90438 0.79912 0.79747 0.86391 0.83977 0.93049 0.96744 0.92545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 10.28 71.98 0.74 -2.11 16 2 C 0.05 0.96 6.47 71.98 0.47 1.43 16 3 O -0.39 -10.83 9.97 -148.98 -1.49 -12.32 16 4 C 0.17 4.12 3.02 29.85 0.09 4.21 16 5 H 0.09 1.95 6.78 -2.39 -0.02 1.94 16 6 C -0.16 -3.03 9.51 71.98 0.68 -2.34 16 7 C 0.20 5.76 6.79 138.13 0.94 6.70 16 8 N -0.50 -16.69 11.25 -188.13 -2.12 -18.80 16 9 C -0.05 -1.49 11.87 83.52 0.99 -0.50 16 10 C -0.05 -1.33 11.12 83.09 0.92 -0.40 16 11 N -0.45 -12.01 2.55 -514.29 -1.31 -13.33 16 12 C 0.11 2.61 4.97 86.38 0.43 3.04 16 13 C 0.01 0.16 2.42 -12.60 -0.03 0.13 16 14 H 0.11 3.50 8.07 -2.39 -0.02 3.48 16 15 C 0.24 9.40 13.27 89.46 1.19 10.58 16 16 N -0.49 -20.82 18.53 19.99 0.37 -20.45 16 17 C 0.04 1.70 4.42 29.85 0.13 1.83 16 18 C -0.54 -26.74 8.60 25.60 0.22 -26.52 16 19 H 0.05 2.39 7.59 -2.91 -0.02 2.37 16 20 C 0.02 1.08 5.46 84.65 0.46 1.54 16 21 N -0.92 -48.97 13.29 21.45 0.28 -48.68 16 22 Si 0.94 41.53 29.54 68.60 2.03 43.55 16 23 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 24 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 25 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 26 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 27 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.07 1.20 7.99 -2.39 -0.02 1.18 16 30 H 0.05 1.12 8.08 -2.39 -0.02 1.10 16 31 H 0.09 1.28 7.99 -2.39 -0.02 1.27 16 32 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.18 4.36 8.06 -2.91 -0.02 4.33 16 35 H 0.19 4.29 8.06 -2.91 -0.02 4.27 16 36 H 0.12 2.49 8.13 -2.39 -0.02 2.47 16 37 H 0.14 2.53 7.60 -2.39 -0.02 2.51 16 38 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.27 13.52 8.31 -92.71 -0.77 12.75 16 Total: -1.00 -66.22 348.30 6.01 -60.20 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: 1.01 Total: 12.23 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: 7.23 Total: -2.40 kcal Atomic # 7 Polarization: -98.49 SS G_CDS: -2.77 Total: -101.26 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: -1.49 Total: -12.32 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.55 kcal Total: -66.22 6.01 -60.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152003769.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.733 kcal (2) G-P(sol) polarization free energy of solvation -66.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds