Wall clock time and date at job start Mon Mar 30 2020 20:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42905 * 109.47475 * 2 1 4 4 C 1.42892 * 114.00449 * 184.35973 * 3 2 1 5 5 H 1.09006 * 109.47194 * 31.96388 * 4 3 2 6 6 C 1.53005 * 109.47205 * 271.96857 * 4 3 2 7 7 C 1.50696 * 109.47294 * 151.96470 * 4 3 2 8 8 N 1.30501 * 125.64964 * 45.93455 * 7 4 3 9 9 C 1.34129 * 109.25579 * 179.73024 * 8 7 4 10 10 C 1.34663 * 108.02363 * 0.40166 * 9 8 7 11 11 N 1.35043 * 125.65506 * 225.90456 * 7 4 3 12 12 C 1.46500 * 126.39416 * 0.02892 * 11 7 4 13 13 C 1.53007 * 109.46901 * 275.31472 * 12 11 7 14 14 H 1.09000 * 109.47073 * 54.52609 * 13 12 11 15 15 C 1.47200 * 109.47108 * 294.52413 * 13 12 11 16 16 N 7.86917 * 148.75828 * 337.20415 * 2 1 3 17 17 C 1.52998 * 109.47119 * 174.52225 * 13 12 11 18 18 C 1.50697 * 109.47459 * 184.99796 * 17 13 12 19 19 H 1.08014 * 119.99558 * 0.02562 * 18 17 13 20 20 C 1.37875 * 120.00796 * 180.02562 * 18 17 13 21 21 N 1.31517 * 119.99121 * 359.97438 * 20 18 17 22 22 Si 1.86791 * 120.00401 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47175 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47478 * 119.99892 * 22 20 18 25 25 H 1.48505 * 109.47159 * 239.99810 * 22 20 18 26 26 H 1.08990 * 109.47211 * 300.00136 * 1 2 3 27 27 H 1.09000 * 109.46783 * 60.00083 * 1 2 3 28 28 H 1.09003 * 109.47189 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47439 * 239.99785 * 2 1 3 30 30 H 1.09000 * 109.47509 * 119.99750 * 2 1 3 31 31 H 1.08998 * 109.46896 * 59.99986 * 6 4 3 32 32 H 1.09002 * 109.46993 * 180.02562 * 6 4 3 33 33 H 1.08997 * 109.46865 * 300.00010 * 6 4 3 34 34 H 1.08006 * 125.98536 * 180.24478 * 9 8 7 35 35 H 1.07997 * 126.59274 * 179.87583 * 10 9 8 36 36 H 1.08999 * 109.47569 * 35.31150 * 12 11 7 37 37 H 1.08995 * 109.47380 * 155.31797 * 12 11 7 38 38 H 1.08998 * 109.47118 * 305.00185 * 17 13 12 39 39 H 1.09006 * 109.46926 * 64.99867 * 17 13 12 40 40 H 0.97002 * 119.99600 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4273 1.4614 -0.0992 5 1 3.8175 0.6354 -0.6939 6 6 4.0417 1.4162 1.3013 7 6 3.7813 2.7681 -0.7612 8 7 3.2637 3.9311 -0.4738 9 6 3.8189 4.8680 -1.2568 10 6 4.7080 4.2613 -2.0660 11 7 4.6872 2.9297 -1.7496 12 6 5.4963 1.8765 -2.3680 13 6 6.7501 1.6354 -1.5248 14 1 6.4605 1.4225 -0.4958 15 6 7.6012 2.8360 -1.5567 16 7 8.2580 3.7626 -1.5813 17 6 7.5256 0.4452 -2.0930 18 6 8.6929 0.1304 -1.1933 19 1 8.8642 0.7202 -0.3047 20 6 9.5422 -0.9102 -1.5042 21 7 9.3332 -1.6285 -2.5859 22 14 10.9885 -1.3007 -0.3886 23 1 11.0023 -0.3526 0.7542 24 1 10.8596 -2.6895 0.1214 25 1 12.2540 -1.1702 -1.1547 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.7856 0.4710 1.7800 32 1 5.1255 1.5037 1.2256 33 1 3.6515 2.2421 1.8960 34 1 3.5907 5.9235 -1.2427 35 1 5.3229 4.7351 -2.8169 36 1 4.9140 0.9568 -2.4243 37 1 5.7875 2.1844 -3.3722 38 1 6.8681 -0.4221 -2.1520 39 1 7.8914 0.6923 -3.0897 40 1 9.9309 -2.3605 -2.8050 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152003844.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:16:52 Heat of formation + Delta-G solvation = 8.803147 kcal Electronic energy + Delta-G solvation = -21520.064344 eV Core-core repulsion = 18335.120487 eV Total energy + Delta-G solvation = -3184.943857 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.14251 -39.15561 -38.56492 -36.07442 -34.96981 -33.73713 -32.83941 -31.16664 -29.58073 -28.71834 -25.70835 -24.69375 -23.75497 -23.51540 -22.22649 -20.75804 -18.88725 -18.36391 -17.91151 -17.54909 -16.76368 -16.58936 -16.31846 -15.84965 -15.25659 -15.03082 -14.77543 -14.46734 -14.24262 -14.14906 -13.96042 -13.89384 -13.48617 -13.38555 -13.15651 -12.97840 -12.86057 -12.67475 -12.61519 -12.49447 -12.18200 -12.14024 -11.75393 -11.66059 -11.33556 -10.91402 -10.57274 -10.56780 -10.51159 -9.36757 -8.22232 -6.29429 1.01180 1.37899 1.43088 1.51175 1.66041 1.83997 1.89712 2.15896 2.40421 2.83939 3.02121 3.15750 3.42907 3.75399 3.86561 3.90636 4.06685 4.16828 4.28404 4.31325 4.44004 4.51071 4.59080 4.59257 4.67559 4.70964 4.76404 4.88681 5.00064 5.11153 5.28225 5.34670 5.35310 5.42346 5.55174 5.75075 5.81312 6.11071 6.17822 6.34042 6.64853 6.83239 7.17141 7.39682 8.88320 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015918 B = 0.005064 C = 0.004223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.569647 B = 5527.385430 C = 6628.079947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.044 3.956 3 O -0.388 6.388 4 C 0.175 3.825 5 H 0.097 0.903 6 C -0.164 4.164 7 C 0.198 3.802 8 N -0.503 5.503 9 C -0.050 4.050 10 C -0.049 4.049 11 N -0.448 5.448 12 C 0.110 3.890 13 C 0.005 3.995 14 H 0.117 0.883 15 C 0.244 3.756 16 N -0.490 5.490 17 C 0.041 3.959 18 C -0.539 4.539 19 H 0.050 0.950 20 C 0.020 3.980 21 N -0.917 5.917 22 Si 0.941 3.059 23 H -0.273 1.273 24 H -0.272 1.272 25 H -0.287 1.287 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.092 0.908 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.087 0.913 32 H 0.066 0.934 33 H 0.056 0.944 34 H 0.184 0.816 35 H 0.186 0.814 36 H 0.139 0.861 37 H 0.116 0.884 38 H 0.050 0.950 39 H 0.012 0.988 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.036 1.067 1.982 15.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.032 4.032 3 O -0.307 6.307 4 C 0.116 3.884 5 H 0.115 0.885 6 C -0.222 4.222 7 C -0.065 4.065 8 N -0.222 5.222 9 C -0.198 4.198 10 C -0.182 4.182 11 N -0.131 5.131 12 C -0.013 4.013 13 C -0.017 4.017 14 H 0.135 0.865 15 C -0.073 4.073 16 N -0.167 5.167 17 C 0.002 3.998 18 C -0.577 4.577 19 H 0.068 0.932 20 C -0.180 4.180 21 N -0.557 5.557 22 Si 0.767 3.233 23 H -0.198 1.198 24 H -0.198 1.198 25 H -0.213 1.213 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.111 0.889 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.106 0.894 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.201 0.799 35 H 0.203 0.797 36 H 0.156 0.844 37 H 0.134 0.866 38 H 0.069 0.931 39 H 0.031 0.969 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.635 2.510 2.391 15.040 hybrid contribution 1.777 -0.642 -0.219 1.902 sum -12.858 1.868 2.171 13.173 Atomic orbital electron populations 1.21741 0.92972 1.03302 1.02446 1.22831 0.96351 0.82530 1.01482 1.88020 1.19725 1.28242 1.94719 1.20160 0.82729 0.89568 0.95982 0.88499 1.22220 1.00921 1.03615 0.95490 1.23164 0.93619 0.96644 0.93041 1.70185 1.26738 0.98970 1.26354 1.22661 0.99479 1.00148 0.97523 1.23005 1.05796 0.83455 1.05991 1.45552 1.30935 1.08277 1.28305 1.22257 0.89933 0.91735 0.97362 1.19596 0.91237 0.87514 1.03395 0.86538 1.29420 0.92835 0.93306 0.91714 1.81046 1.11074 1.14301 1.10309 1.19002 0.94298 0.90984 0.95494 1.21471 1.11996 1.14866 1.09371 0.93193 1.25556 0.99890 0.96203 0.96304 1.69997 1.39112 1.20637 1.25953 0.85759 0.79809 0.78411 0.79285 1.19771 1.19757 1.21288 0.92415 0.92779 0.88911 0.92064 0.91819 0.89415 0.91513 0.92503 0.79880 0.79735 0.84359 0.86576 0.93142 0.96911 0.92615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 10.28 71.98 0.74 -1.54 16 2 C 0.04 0.79 6.51 71.98 0.47 1.26 16 3 O -0.39 -9.92 9.98 -148.98 -1.49 -11.40 16 4 C 0.18 4.27 3.10 29.85 0.09 4.36 16 5 H 0.10 1.92 6.46 -2.38 -0.02 1.90 16 6 C -0.16 -3.81 9.48 71.98 0.68 -3.13 16 7 C 0.20 5.78 6.79 138.13 0.94 6.71 16 8 N -0.50 -16.68 11.25 -188.13 -2.12 -18.80 16 9 C -0.05 -1.46 11.87 83.52 0.99 -0.47 16 10 C -0.05 -1.33 11.12 83.08 0.92 -0.41 16 11 N -0.45 -12.00 2.55 -514.29 -1.31 -13.32 16 12 C 0.11 2.62 5.17 86.38 0.45 3.06 16 13 C 0.00 0.15 2.42 -12.60 -0.03 0.12 16 14 H 0.12 3.50 7.31 -2.39 -0.02 3.48 16 15 C 0.24 9.15 13.28 89.44 1.19 10.34 16 16 N -0.49 -20.37 18.54 20.01 0.37 -20.00 16 17 C 0.04 1.65 4.42 29.85 0.13 1.78 16 18 C -0.54 -26.29 8.60 25.60 0.22 -26.07 16 19 H 0.05 2.47 7.59 -2.90 -0.02 2.45 16 20 C 0.02 1.04 5.46 84.65 0.46 1.50 16 21 N -0.92 -48.93 13.29 21.45 0.28 -48.65 16 22 Si 0.94 41.25 29.54 68.60 2.03 43.28 16 23 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 24 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 25 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 26 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.06 0.95 7.99 -2.39 -0.02 0.93 16 30 H 0.06 0.97 7.81 -2.39 -0.02 0.96 16 31 H 0.09 1.63 7.81 -2.39 -0.02 1.61 16 32 H 0.07 1.59 7.31 -2.39 -0.02 1.57 16 33 H 0.06 1.48 8.14 -2.39 -0.02 1.47 16 34 H 0.18 4.35 8.06 -2.91 -0.02 4.33 16 35 H 0.19 4.29 8.06 -2.91 -0.02 4.26 16 36 H 0.14 2.55 7.14 -2.39 -0.02 2.53 16 37 H 0.12 2.50 8.13 -2.39 -0.02 2.48 16 38 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.01 0.55 8.14 -2.38 -0.02 0.53 16 40 H 0.26 13.49 8.31 -92.71 -0.77 12.72 16 Total: -1.00 -65.38 345.77 6.04 -59.34 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: 1.02 Total: 12.03 kcal Atomic # 6 Polarization: -9.74 SS G_CDS: 7.25 Total: -2.48 kcal Atomic # 7 Polarization: -97.99 SS G_CDS: -2.77 Total: -100.76 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: -1.49 Total: -11.40 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 2.03 Total: 43.28 kcal Total: -65.38 6.04 -59.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152003844.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.139 kcal (2) G-P(sol) polarization free energy of solvation -65.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds