Wall clock time and date at job start Mon Mar 30 2020 20:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46754 * 2 1 4 4 C 1.50706 * 109.46978 * 119.99182 * 2 1 3 5 5 H 1.07995 * 119.99670 * 119.99834 * 4 2 1 6 6 C 1.37882 * 120.00155 * 300.00413 * 4 2 1 7 7 N 1.31509 * 119.99702 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 119.99756 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47429 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47130 * 119.99777 * 8 6 4 11 11 H 1.48499 * 109.47005 * 239.99509 * 8 6 4 12 12 N 1.46492 * 109.47198 * 239.99480 * 2 1 3 13 13 C 1.34773 * 120.00145 * 85.00169 * 12 2 1 14 14 O 1.21601 * 119.99972 * 359.97438 * 13 12 2 15 15 N 1.34780 * 120.00244 * 180.02562 * 13 12 2 16 16 C 1.40200 * 119.99967 * 185.63348 * 15 13 12 17 17 C 1.38658 * 120.09870 * 24.77478 * 16 15 13 18 18 C 1.38245 * 120.00359 * 180.29268 * 17 16 15 19 19 C 1.38275 * 120.19810 * 359.67706 * 18 17 16 20 20 C 1.38225 * 120.18792 * 359.97438 * 19 18 17 21 21 C 1.38707 * 119.99795 * 0.02562 * 20 19 18 22 22 N 1.39926 * 120.10099 * 180.02562 * 21 20 19 23 23 C 1.46896 * 110.99756 * 59.99851 * 22 21 20 24 24 C 1.46898 * 110.99855 * 296.04574 * 22 21 20 25 25 H 1.08995 * 109.47273 * 60.00213 * 1 2 3 26 26 H 1.08997 * 109.47186 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46999 * 300.00413 * 1 2 3 28 28 H 0.97002 * 119.99638 * 180.02562 * 7 6 4 29 29 H 0.97004 * 119.99944 * 264.99651 * 12 2 1 30 30 H 0.96993 * 119.99718 * 5.63214 * 15 13 12 31 31 H 1.08002 * 119.99208 * 359.96809 * 17 16 15 32 32 H 1.08003 * 119.89453 * 179.69498 * 18 17 16 33 33 H 1.07991 * 119.90273 * 180.02562 * 19 18 17 34 34 H 1.08001 * 120.00137 * 179.97438 * 20 19 18 35 35 H 1.09003 * 109.47221 * 60.00131 * 23 22 21 36 36 H 1.09004 * 109.47432 * 299.99981 * 23 22 21 37 37 H 1.09002 * 109.47073 * 180.02562 * 23 22 21 38 38 H 1.09006 * 109.47309 * 183.95061 * 24 22 21 39 39 H 1.09003 * 109.47246 * 303.95173 * 24 22 21 40 40 H 1.09000 * 109.47258 * 63.95322 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1316 6 6 1.6992 -0.2391 2.4829 7 7 0.9435 0.8304 2.6033 8 14 2.3212 -1.1199 4.0081 9 1 3.1464 -2.2865 3.6041 10 1 3.1465 -0.1869 4.8166 11 1 1.1659 -1.5861 4.8162 12 7 2.0184 -0.6907 -1.1960 13 6 2.1471 -0.0185 -2.3570 14 8 1.8575 1.1613 -2.4119 15 7 2.5959 -0.6540 -3.4576 16 6 2.8423 0.0691 -4.6332 17 6 3.1302 1.4239 -4.5688 18 6 3.3668 2.1363 -5.7297 19 6 3.3241 1.5005 -6.9568 20 6 3.0449 0.1487 -7.0299 21 6 2.8062 -0.5738 -5.8701 22 7 2.5240 -1.9424 -5.9415 23 6 3.6332 -2.6768 -6.5646 24 6 1.2646 -2.1835 -6.6583 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.7094 1.1621 3.4843 29 1 2.2491 -1.6319 -1.1524 30 1 2.7484 -1.6117 -3.4362 31 1 3.1643 1.9237 -3.6120 32 1 3.5861 3.1926 -5.6778 33 1 3.5101 2.0615 -7.8606 34 1 3.0119 -0.3448 -7.9900 35 1 4.5387 -2.5370 -5.9740 36 1 3.7964 -2.3005 -7.5745 37 1 3.3875 -3.7379 -6.6080 38 1 1.0334 -3.2486 -6.6385 39 1 0.4601 -1.6281 -6.1762 40 1 1.3658 -1.8529 -7.6920 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000154584738.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:17:17 Heat of formation + Delta-G solvation = -8.894083 kcal Electronic energy + Delta-G solvation = -21494.126304 eV Core-core repulsion = 18308.415037 eV Total energy + Delta-G solvation = -3185.711267 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.74836 -40.23227 -37.49514 -36.80443 -35.59330 -34.32434 -31.37713 -30.83938 -29.57484 -28.45520 -27.33243 -25.45946 -24.36581 -22.69851 -21.96335 -21.47728 -19.68668 -18.83135 -17.87718 -17.53421 -16.89009 -16.58796 -16.10549 -15.92331 -15.75816 -15.34394 -15.20383 -14.62044 -14.51674 -14.37012 -13.88371 -13.57792 -13.16745 -13.09368 -12.97795 -12.90162 -12.76911 -12.71895 -12.60424 -12.27624 -12.24451 -12.09815 -11.46613 -11.08463 -10.95801 -10.60991 -9.83607 -9.70764 -9.48672 -8.84984 -8.17042 -6.34193 0.33707 0.45025 1.45777 1.46316 1.58559 1.80391 2.18888 2.43133 2.85889 2.93594 3.13747 3.45737 3.99929 4.19431 4.22206 4.41978 4.44518 4.49995 4.61750 4.66464 4.72368 4.78006 4.92136 4.95415 5.00166 5.03365 5.09637 5.24425 5.40667 5.41157 5.58978 5.59414 5.64732 5.69713 5.85742 5.92588 5.97183 6.09526 6.30580 6.44489 6.73567 7.23687 7.34581 7.67822 8.89857 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027104 B = 0.003955 C = 0.003709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.810440 B = 7077.533650 C = 7547.218198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.288 3.712 3 H 0.001 0.999 4 C -0.545 4.545 5 H 0.073 0.927 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.975 3.025 9 H -0.260 1.260 10 H -0.284 1.284 11 H -0.278 1.278 12 N -0.714 5.714 13 C 0.691 3.309 14 O -0.623 6.623 15 N -0.664 5.664 16 C 0.178 3.822 17 C -0.159 4.159 18 C -0.104 4.104 19 C -0.133 4.133 20 C -0.123 4.123 21 C 0.043 3.957 22 N -0.521 5.521 23 C 0.028 3.972 24 C 0.032 3.968 25 H 0.009 0.991 26 H 0.040 0.960 27 H 0.068 0.932 28 H 0.266 0.734 29 H 0.402 0.598 30 H 0.420 0.580 31 H 0.117 0.883 32 H 0.139 0.861 33 H 0.152 0.848 34 H 0.146 0.854 35 H 0.063 0.937 36 H 0.042 0.958 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.049 0.951 40 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.181 -7.310 -20.549 22.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.185 3.815 3 H 0.018 0.982 4 C -0.584 4.584 5 H 0.091 0.909 6 C -0.185 4.185 7 N -0.555 5.555 8 Si 0.799 3.201 9 H -0.184 1.184 10 H -0.210 1.210 11 H -0.204 1.204 12 N -0.366 5.366 13 C 0.392 3.608 14 O -0.505 6.505 15 N -0.310 5.310 16 C 0.080 3.920 17 C -0.180 4.180 18 C -0.123 4.123 19 C -0.152 4.152 20 C -0.144 4.144 21 C -0.054 4.054 22 N -0.243 5.243 23 C -0.118 4.118 24 C -0.114 4.114 25 H 0.028 0.972 26 H 0.059 0.941 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.237 0.763 30 H 0.258 0.742 31 H 0.134 0.866 32 H 0.156 0.844 33 H 0.170 0.830 34 H 0.164 0.836 35 H 0.082 0.918 36 H 0.060 0.940 37 H 0.107 0.893 38 H 0.108 0.892 39 H 0.068 0.932 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 4.759 -6.402 -19.848 21.391 hybrid contribution 0.233 -0.456 0.476 0.699 sum 4.992 -6.858 -19.373 21.148 Atomic orbital electron populations 1.21917 0.98411 0.99412 0.99489 1.18273 0.90898 0.91717 0.80629 0.98157 1.21547 1.32609 1.13592 0.90624 0.90850 1.25793 0.94845 0.95586 1.02274 1.70062 1.36980 1.23898 1.24598 0.85258 0.78072 0.78472 0.78278 1.18408 1.20964 1.20367 1.45476 1.68849 1.13994 1.08275 1.16283 0.78395 0.84997 0.81139 1.90816 1.58369 1.16327 1.84940 1.42436 1.67905 1.12126 1.08572 1.17722 0.98024 0.91497 0.84754 1.21428 1.02341 0.93770 1.00454 1.21300 0.98632 1.00612 0.91750 1.21273 1.01365 0.94558 0.98008 1.21590 0.99950 0.94988 0.97834 1.18495 1.05577 0.90568 0.90765 1.59453 1.04971 1.05058 1.54808 1.22517 0.92757 0.98975 0.97583 1.22435 0.89808 1.02912 0.96265 0.97158 0.94126 0.91305 0.92506 0.76289 0.74164 0.86563 0.84354 0.82984 0.83586 0.91819 0.93953 0.89309 0.89241 0.93180 0.93791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.95 9.26 71.98 0.67 -6.28 16 2 C 0.29 15.33 2.56 44.25 0.11 15.45 16 3 H 0.00 0.03 7.58 -2.39 -0.02 0.01 16 4 C -0.55 -29.18 8.73 25.60 0.22 -28.96 16 5 H 0.07 3.67 7.74 -2.91 -0.02 3.65 16 6 C 0.02 0.82 5.30 84.66 0.45 1.26 16 7 N -0.92 -52.91 11.32 21.45 0.24 -52.67 16 8 Si 0.97 42.18 29.54 68.60 2.03 44.20 16 9 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 10 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 11 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 12 N -0.71 -31.06 5.07 -461.40 -2.34 -33.40 16 13 C 0.69 30.00 8.33 179.05 1.49 31.50 16 14 O -0.62 -32.20 13.18 -4.04 -0.05 -32.25 16 15 N -0.66 -22.56 5.29 -316.67 -1.67 -24.24 16 16 C 0.18 5.77 6.45 38.19 0.25 6.02 16 17 C -0.16 -5.48 8.72 22.37 0.20 -5.28 16 18 C -0.10 -2.75 10.04 22.28 0.22 -2.52 16 19 C -0.13 -2.73 10.04 22.28 0.22 -2.51 16 20 C -0.12 -2.53 8.62 22.38 0.19 -2.34 16 21 C 0.04 1.07 4.74 38.25 0.18 1.26 16 22 N -0.52 -10.71 4.32 -744.48 -3.22 -13.93 16 23 C 0.03 0.42 9.35 127.69 1.19 1.61 16 24 C 0.03 0.56 9.33 127.69 1.19 1.75 16 25 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 26 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.07 3.89 6.07 -2.39 -0.01 3.87 16 28 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 29 H 0.40 14.76 8.56 -92.71 -0.79 13.97 16 30 H 0.42 11.93 8.29 -92.71 -0.77 11.16 16 31 H 0.12 4.89 5.79 -2.91 -0.02 4.87 16 32 H 0.14 3.06 8.06 -2.91 -0.02 3.04 16 33 H 0.15 2.09 8.06 -2.92 -0.02 2.06 16 34 H 0.15 2.14 7.05 -2.91 -0.02 2.12 16 35 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.04 0.53 7.13 -2.39 -0.02 0.51 16 37 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 39 H 0.05 1.08 8.13 -2.39 -0.02 1.06 16 40 H 0.04 0.63 7.48 -2.39 -0.02 0.61 16 Total: -1.00 -68.72 330.44 1.07 -67.65 By element: Atomic # 1 Polarization: 34.19 SS G_CDS: -0.50 Total: 33.69 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: 6.59 Total: 10.95 kcal Atomic # 7 Polarization: -117.25 SS G_CDS: -6.99 Total: -124.24 kcal Atomic # 8 Polarization: -32.20 SS G_CDS: -0.05 Total: -32.25 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.20 kcal Total: -68.72 1.07 -67.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154584738.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.757 kcal (2) G-P(sol) polarization free energy of solvation -68.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds