Wall clock time and date at job start Mon Mar 30 2020 20:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46880 * 2 1 4 4 C 1.50704 * 109.47016 * 240.00228 * 2 1 3 5 5 H 1.08004 * 119.99834 * 240.00108 * 4 2 1 6 6 C 1.37876 * 120.00226 * 59.99490 * 4 2 1 7 7 N 1.31521 * 119.99803 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00178 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47208 * 60.00148 * 8 6 4 10 10 H 1.48499 * 109.47211 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47102 * 300.00174 * 8 6 4 12 12 N 1.46902 * 109.47421 * 120.00129 * 2 1 3 13 13 C 1.46902 * 110.99664 * 58.95326 * 12 2 1 14 14 C 1.46902 * 110.99852 * 295.00183 * 12 2 1 15 15 C 1.50699 * 109.46970 * 189.99938 * 14 12 2 16 16 O 1.21285 * 119.99771 * 359.97438 * 15 14 12 17 17 N 1.34773 * 120.00157 * 179.97438 * 15 14 12 18 18 C 1.46503 * 120.00355 * 180.02562 * 17 15 14 19 19 C 1.50695 * 109.47313 * 180.02562 * 18 17 15 20 20 C 1.38678 * 120.41675 * 270.25293 * 19 18 17 21 21 C 1.38627 * 118.41930 * 180.24221 * 20 19 18 22 22 C 1.38232 * 119.16085 * 359.75178 * 21 20 19 23 23 N 1.31857 * 120.76541 * 359.97438 * 22 21 20 24 24 C 1.31889 * 121.72235 * 0.02562 * 23 22 21 25 25 H 1.09002 * 109.46880 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46985 * 299.99582 * 1 2 3 27 27 H 1.08993 * 109.47188 * 60.00029 * 1 2 3 28 28 H 0.97000 * 119.99851 * 179.97438 * 7 6 4 29 29 H 1.09001 * 109.47444 * 296.04067 * 13 12 2 30 30 H 1.08998 * 109.47281 * 56.04752 * 13 12 2 31 31 H 1.09004 * 109.46655 * 176.04756 * 13 12 2 32 32 H 1.08999 * 109.47098 * 69.99762 * 14 12 2 33 33 H 1.09000 * 109.47012 * 310.00080 * 14 12 2 34 34 H 0.97000 * 119.99935 * 359.97438 * 17 15 14 35 35 H 1.09001 * 109.46632 * 59.99997 * 18 17 15 36 36 H 1.08996 * 109.46728 * 299.99991 * 18 17 15 37 37 H 1.07994 * 120.78944 * 359.96926 * 20 19 18 38 38 H 1.07997 * 120.42083 * 179.72800 * 21 20 19 39 39 H 1.07999 * 119.61954 * 180.02562 * 22 21 20 40 40 H 1.08002 * 119.61237 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 1.8257 -2.5202 -4.0078 10 1 1.8267 -0.4199 -5.2205 11 1 3.8062 -1.1208 -4.0083 12 7 2.0198 -0.6925 1.1994 13 6 1.5284 -2.0761 1.2459 14 6 1.6488 0.0391 2.4181 15 6 2.3680 -0.5572 3.6005 16 8 3.1156 -1.4992 3.4435 17 7 2.1805 -0.0437 4.8324 18 6 2.8801 -0.6230 5.9818 19 6 2.4995 0.1274 7.2320 20 6 3.2307 1.2341 7.6367 21 6 2.8471 1.8904 8.7959 22 6 1.7532 1.4263 9.5022 23 7 1.0778 0.3736 9.0845 24 6 1.4140 -0.2751 7.9865 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 0.7093 1.1618 -3.4844 29 1 0.4420 -2.0732 1.3348 30 1 1.8167 -2.5950 0.3317 31 1 1.9618 -2.5869 2.1058 32 1 0.5723 -0.0346 2.5726 33 1 1.9297 1.0870 2.3125 34 1 1.5828 0.7099 4.9579 35 1 3.9565 -0.5492 5.8268 36 1 2.5992 -1.6708 6.0877 37 1 4.0814 1.5739 7.0647 38 1 3.3962 2.7531 9.1432 39 1 1.4476 1.9321 10.4061 40 1 0.8370 -1.1336 7.6759 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161943339.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:17:36 Heat of formation + Delta-G solvation = -10.569314 kcal Electronic energy + Delta-G solvation = -20851.319608 eV Core-core repulsion = 17665.535698 eV Total energy + Delta-G solvation = -3185.783910 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.33173 -40.63464 -38.43406 -36.19982 -34.67284 -33.43815 -32.53003 -30.95127 -29.27893 -27.39827 -27.06487 -25.41586 -24.52657 -22.97082 -21.84292 -20.90946 -18.54307 -18.07023 -17.86812 -17.45189 -17.13521 -16.73373 -16.41654 -15.91999 -15.69080 -15.20650 -15.02233 -14.69309 -14.34497 -14.26928 -14.05973 -13.92922 -13.78297 -13.35906 -12.90132 -12.73507 -12.63509 -12.54956 -12.51011 -12.20589 -12.00515 -11.88365 -11.04672 -10.90958 -10.64099 -10.47684 -10.44946 -10.08310 -10.01106 -8.83671 -8.10489 -6.20046 0.03431 0.30741 1.43624 1.44904 1.52606 1.69250 2.17566 2.45338 2.89765 3.18985 3.44787 3.49273 3.71467 3.88841 3.96838 4.02785 4.08263 4.38001 4.46123 4.50116 4.60762 4.66658 4.72981 4.74854 4.84772 4.85979 4.92232 5.14159 5.16924 5.23015 5.28969 5.44092 5.53923 5.71687 5.73736 5.80790 6.17439 6.47083 6.49027 6.75972 6.91972 6.99196 7.32218 7.48707 8.95482 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.042755 B = 0.002955 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.738210 B = 9472.185483 C = 9616.096064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.216 3.784 3 H 0.015 0.985 4 C -0.519 4.519 5 H 0.051 0.949 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.956 3.044 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.276 1.276 12 N -0.536 5.536 13 C 0.042 3.958 14 C 0.035 3.965 15 C 0.521 3.479 16 O -0.559 6.559 17 N -0.717 5.717 18 C 0.171 3.829 19 C -0.158 4.158 20 C -0.061 4.061 21 C -0.168 4.168 22 C 0.094 3.906 23 N -0.515 5.515 24 C 0.106 3.894 25 H 0.029 0.971 26 H 0.035 0.965 27 H 0.063 0.937 28 H 0.262 0.738 29 H 0.018 0.982 30 H 0.051 0.949 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.106 0.894 34 H 0.412 0.588 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.151 0.849 38 H 0.165 0.835 39 H 0.179 0.821 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.924 3.510 23.047 23.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.109 3.891 3 H 0.033 0.967 4 C -0.557 4.557 5 H 0.069 0.931 6 C -0.184 4.184 7 N -0.558 5.558 8 Si 0.782 3.218 9 H -0.199 1.199 10 H -0.207 1.207 11 H -0.201 1.201 12 N -0.260 5.260 13 C -0.106 4.106 14 C -0.096 4.096 15 C 0.308 3.692 16 O -0.437 6.437 17 N -0.371 5.371 18 C 0.048 3.952 19 C -0.161 4.161 20 C -0.087 4.087 21 C -0.188 4.188 22 C -0.063 4.063 23 N -0.223 5.223 24 C -0.051 4.051 25 H 0.048 0.952 26 H 0.053 0.947 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.036 0.964 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.124 0.876 34 H 0.248 0.752 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.169 0.831 38 H 0.183 0.817 39 H 0.196 0.804 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 1.187 2.633 23.258 23.437 hybrid contribution -0.199 0.275 -1.461 1.500 sum 0.988 2.908 21.797 22.012 Atomic orbital electron populations 1.22219 0.99824 0.99278 1.00577 1.19124 0.90345 0.93089 0.86515 0.96719 1.21347 1.30715 1.12492 0.91143 0.93078 1.25612 0.95390 0.95824 1.01554 1.69981 1.37734 1.23951 1.24103 0.85643 0.78639 0.78711 0.78814 1.19869 1.20694 1.20100 1.61926 1.60255 1.02582 1.01262 1.22224 0.96355 0.90293 1.01734 1.21993 0.98600 0.99669 0.89362 1.20775 0.81323 0.82787 0.84340 1.90644 1.38374 1.29268 1.85418 1.45915 1.48692 1.36736 1.05756 1.20013 0.97252 0.96644 0.81314 1.20776 0.98543 0.98631 0.98113 1.21874 0.98522 0.92604 0.95707 1.22497 0.98545 1.02092 0.95618 1.23351 0.91528 0.91758 0.99670 1.67773 1.31033 1.08801 1.14728 1.22899 0.93775 0.98408 0.89994 0.95188 0.94651 0.91791 0.92885 0.96385 0.92983 0.91424 0.91051 0.87611 0.75219 0.90798 0.90797 0.83136 0.81700 0.80368 0.82181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.49 8.28 71.98 0.60 -6.89 16 2 C 0.22 10.90 2.34 44.17 0.10 11.00 16 3 H 0.01 0.82 8.03 -2.39 -0.02 0.80 16 4 C -0.52 -29.06 7.88 25.60 0.20 -28.86 16 5 H 0.05 2.93 6.77 -2.91 -0.02 2.91 16 6 C 0.01 0.83 5.30 84.65 0.45 1.28 16 7 N -0.92 -52.25 11.32 21.45 0.24 -52.01 16 8 Si 0.96 44.32 29.54 68.60 2.03 46.35 16 9 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 10 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 11 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 12 N -0.54 -23.74 4.48 -906.01 -4.06 -27.80 16 13 C 0.04 1.79 8.44 127.69 1.08 2.87 16 14 C 0.04 1.18 4.89 85.56 0.42 1.60 16 15 C 0.52 16.23 7.56 87.66 0.66 16.90 16 16 O -0.56 -22.05 14.31 -3.05 -0.04 -22.10 16 17 N -0.72 -15.32 5.55 -466.79 -2.59 -17.91 16 18 C 0.17 3.23 5.82 85.63 0.50 3.73 16 19 C -0.16 -2.45 5.27 -19.77 -0.10 -2.55 16 20 C -0.06 -0.76 9.86 22.47 0.22 -0.54 16 21 C -0.17 -1.74 10.11 22.36 0.23 -1.51 16 22 C 0.09 1.21 11.18 84.69 0.95 2.16 16 23 N -0.51 -9.42 10.36 -195.83 -2.03 -11.45 16 24 C 0.11 1.80 10.86 84.67 0.92 2.72 16 25 H 0.03 1.38 6.47 -2.39 -0.02 1.36 16 26 H 0.03 1.40 6.75 -2.39 -0.02 1.39 16 27 H 0.06 3.35 6.07 -2.39 -0.01 3.34 16 28 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 29 H 0.02 0.72 6.51 -2.39 -0.02 0.70 16 30 H 0.05 2.40 6.41 -2.39 -0.02 2.39 16 31 H 0.07 2.78 5.88 -2.38 -0.01 2.77 16 32 H 0.07 2.18 6.94 -2.39 -0.02 2.16 16 33 H 0.11 3.31 8.00 -2.39 -0.02 3.29 16 34 H 0.41 6.80 8.46 -92.71 -0.78 6.02 16 35 H 0.07 1.48 8.10 -2.39 -0.02 1.46 16 36 H 0.07 1.48 8.09 -2.39 -0.02 1.46 16 37 H 0.15 1.47 8.06 -2.91 -0.02 1.44 16 38 H 0.17 0.73 8.06 -2.91 -0.02 0.70 16 39 H 0.18 1.30 8.06 -2.91 -0.02 1.28 16 40 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 Total: -1.00 -69.34 327.70 0.03 -69.31 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: 0.27 Total: 13.72 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: 6.22 Total: 1.89 kcal Atomic # 7 Polarization: -100.73 SS G_CDS: -8.43 Total: -109.17 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: -0.04 Total: -22.10 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -69.34 0.03 -69.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161943339.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.736 kcal (2) G-P(sol) polarization free energy of solvation -69.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds