Wall clock time and date at job start Mon Mar 30 2020 20:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46502 * 109.47124 * 2 1 4 4 C 1.34777 * 119.99965 * 179.97438 * 3 2 1 5 5 O 1.21281 * 120.00162 * 0.02562 * 4 3 2 6 6 C 1.50702 * 120.00154 * 180.02562 * 4 3 2 7 7 N 1.46892 * 109.47263 * 174.30873 * 6 4 3 8 8 C 1.46895 * 111.00478 * 287.80686 * 7 6 4 9 9 C 1.50701 * 109.47184 * 294.67283 * 8 7 6 10 10 H 1.08000 * 119.99829 * 5.33905 * 9 8 7 11 11 C 1.37877 * 119.99708 * 185.33718 * 9 8 7 12 12 N 1.31508 * 120.00601 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99775 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47043 * 59.99762 * 13 11 9 15 15 H 1.48490 * 109.47440 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.47076 * 300.00209 * 13 11 9 17 17 C 1.46907 * 111.00055 * 163.85032 * 7 6 4 18 18 C 1.50699 * 109.47334 * 190.00163 * 17 7 6 19 19 C 1.38231 * 119.61520 * 95.02245 * 18 17 7 20 20 C 1.38624 * 119.16007 * 179.97438 * 19 18 17 21 21 C 1.38671 * 118.42415 * 0.02562 * 20 19 18 22 22 C 1.38188 * 119.16116 * 0.02562 * 21 20 19 23 23 N 1.31847 * 119.62055 * 275.00616 * 18 17 7 24 24 H 1.08999 * 109.47479 * 59.99676 * 1 2 3 25 25 H 1.09006 * 109.47459 * 179.97438 * 1 2 3 26 26 H 1.09009 * 109.47215 * 299.99629 * 1 2 3 27 27 H 1.09004 * 109.47291 * 240.00846 * 2 1 3 28 28 H 1.08999 * 109.47479 * 120.00324 * 2 1 3 29 29 H 0.96998 * 120.00285 * 0.02562 * 3 2 1 30 30 H 1.09011 * 109.46700 * 54.31197 * 6 4 3 31 31 H 1.08992 * 109.47170 * 294.31566 * 6 4 3 32 32 H 1.09006 * 109.47315 * 54.67585 * 8 7 6 33 33 H 1.09004 * 109.47182 * 174.67309 * 8 7 6 34 34 H 0.96996 * 120.00283 * 179.97438 * 12 11 9 35 35 H 1.09002 * 109.46703 * 70.00635 * 17 7 6 36 36 H 1.08996 * 109.46720 * 310.00583 * 17 7 6 37 37 H 1.08002 * 120.41970 * 359.95808 * 19 18 17 38 38 H 1.08006 * 120.79026 * 180.02562 * 20 19 18 39 39 H 1.07999 * 120.42600 * 179.97438 * 21 20 19 40 40 H 1.07994 * 119.62099 * 180.27598 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3433 1.6275 0.0005 5 8 4.1315 0.7057 0.0005 6 6 3.8457 3.0483 0.0011 7 7 5.3082 3.0505 0.1389 8 6 5.7092 2.6750 1.5013 9 6 5.2409 3.7289 2.4713 10 1 4.6261 4.5465 2.1251 11 6 5.5974 3.6492 3.8008 12 7 6.3456 2.6534 4.2226 13 14 5.0163 4.9552 5.0034 14 1 3.5317 4.9775 5.0307 15 1 5.5312 4.6426 6.3607 16 1 5.5235 6.2835 4.5749 17 6 5.8702 4.3555 -0.2344 18 6 7.3712 4.2505 -0.3185 19 6 7.9717 4.0104 -1.5402 20 6 9.3532 3.9162 -1.6068 21 6 10.0823 4.0671 -0.4370 22 6 9.4123 4.3042 0.7481 23 7 8.0964 4.3892 0.7738 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8901 27 1 1.8933 -0.5137 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 1.3880 2.1185 0.0004 30 1 3.4013 3.5905 0.8359 31 1 3.5683 3.5322 -0.9353 32 1 5.2598 1.7165 1.7612 33 1 6.7950 2.5924 1.5507 34 1 6.5967 2.5976 5.1578 35 1 5.5994 5.0963 0.5179 36 1 5.4723 4.6588 -1.2028 37 1 7.3723 3.8974 -2.4314 38 1 9.8499 3.7296 -2.5476 39 1 11.1600 3.9994 -0.4516 40 1 9.9730 4.4274 1.6629 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178382295.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:17:46 Heat of formation + Delta-G solvation = 11.445501 kcal Electronic energy + Delta-G solvation = -21674.005782 eV Core-core repulsion = 18489.176506 eV Total energy + Delta-G solvation = -3184.829276 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.68513 -39.05809 -36.29477 -34.71936 -32.37181 -31.90797 -31.27605 -30.40473 -27.43725 -26.86551 -24.35295 -22.95170 -22.72382 -21.93140 -20.38548 -19.52126 -16.96929 -16.14392 -16.00105 -15.73752 -15.48000 -15.36419 -14.88079 -14.68894 -14.37564 -13.88123 -13.36976 -13.19728 -12.77768 -12.71885 -12.48803 -12.20938 -12.15634 -11.74145 -11.56786 -11.23841 -11.07018 -10.93235 -10.79051 -10.66121 -10.24497 -9.91379 -9.53077 -9.28109 -9.11162 -8.65690 -8.60665 -8.47246 -8.20649 -7.12076 -5.83851 -3.90068 1.64890 1.84775 3.34823 3.36524 3.41821 3.43392 3.58475 4.35653 4.53716 4.92761 5.04861 5.14618 5.17091 5.28308 5.34543 5.40578 5.47959 5.51784 5.56657 5.65324 5.80173 5.85015 5.96748 6.01247 6.11840 6.13237 6.21991 6.29785 6.48597 6.62801 6.77690 6.84163 7.22463 7.34056 7.72352 7.94060 8.07027 8.14378 8.36143 8.44146 8.76148 8.90928 9.15868 9.73197 11.22669 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.011891 B = 0.006692 C = 0.004686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2354.113409 B = 4183.264110 C = 5973.620908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.117 3.883 3 N -0.744 5.744 4 C 0.519 3.481 5 O -0.517 6.517 6 C 0.042 3.958 7 N -0.520 5.520 8 C 0.189 3.811 9 C -0.536 4.536 10 H 0.050 0.950 11 C 0.072 3.928 12 N -0.886 5.886 13 Si 0.883 3.117 14 H -0.281 1.281 15 H -0.289 1.289 16 H -0.278 1.278 17 C 0.105 3.895 18 C 0.157 3.843 19 C -0.165 4.165 20 C -0.086 4.086 21 C -0.189 4.189 22 C 0.099 3.901 23 N -0.439 5.439 24 H 0.058 0.942 25 H 0.069 0.931 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.395 0.605 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.032 0.968 33 H 0.047 0.953 34 H 0.259 0.741 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.127 0.873 38 H 0.125 0.875 39 H 0.125 0.875 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.426 1.822 -11.700 12.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.007 4.007 3 N -0.399 5.399 4 C 0.305 3.695 5 O -0.390 6.390 6 C -0.090 4.090 7 N -0.244 5.244 8 C 0.064 3.936 9 C -0.575 4.575 10 H 0.069 0.931 11 C -0.130 4.130 12 N -0.525 5.525 13 Si 0.711 3.289 14 H -0.207 1.207 15 H -0.214 1.214 16 H -0.203 1.203 17 C -0.024 4.024 18 C 0.018 3.982 19 C -0.185 4.185 20 C -0.113 4.113 21 C -0.209 4.209 22 C -0.059 4.059 23 N -0.147 5.147 24 H 0.077 0.923 25 H 0.088 0.912 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.229 0.771 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.050 0.950 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.145 0.855 38 H 0.143 0.857 39 H 0.143 0.857 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -3.970 0.842 -11.059 11.780 hybrid contribution -0.410 1.406 0.657 1.605 sum -4.380 2.249 -10.402 11.509 Atomic orbital electron populations 1.21989 0.95020 1.02725 1.02279 1.21164 0.93574 0.83912 1.02062 1.46052 1.07502 1.08110 1.78275 1.20773 0.81362 0.92178 0.75151 1.90673 1.55001 1.46350 1.46957 1.21782 0.92322 0.93010 1.01905 1.62340 1.05558 1.25310 1.31187 1.19859 0.98017 0.95624 0.80124 1.21489 1.32282 1.09886 0.93890 0.93148 1.24816 0.94895 0.95184 0.98123 1.69944 1.36405 1.30616 1.15545 0.86828 0.78659 0.82735 0.80681 1.20702 1.21444 1.20335 1.20847 0.88384 0.93257 0.99866 1.21149 0.96393 0.92668 0.87950 1.21903 0.95096 1.02231 0.99277 1.21412 0.94115 0.97479 0.98253 1.22041 1.00736 1.03906 0.94262 1.22799 0.90706 0.95096 0.97258 1.67785 1.06459 1.10378 1.30114 0.92263 0.91245 0.92033 0.92066 0.91809 0.77134 0.90721 0.90030 0.94960 0.93517 0.93132 0.91499 0.91590 0.85473 0.85744 0.85739 0.83473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 10.03 37.15 0.37 -1.09 16 2 C 0.12 1.53 6.39 -4.04 -0.03 1.50 16 3 N -0.74 -10.82 5.56 -60.29 -0.33 -11.16 16 4 C 0.52 10.04 7.40 -10.98 -0.08 9.96 16 5 O -0.52 -12.39 15.16 5.56 0.08 -12.31 16 6 C 0.04 0.77 5.32 -4.98 -0.03 0.74 16 7 N -0.52 -11.51 4.29 -238.96 -1.03 -12.53 16 8 C 0.19 5.13 4.49 -4.98 -0.02 5.11 16 9 C -0.54 -14.86 7.33 -34.44 -0.25 -15.11 16 10 H 0.05 1.34 5.97 -52.49 -0.31 1.03 16 11 C 0.07 2.08 5.46 -17.82 -0.10 1.99 16 12 N -0.89 -27.12 13.29 55.43 0.74 -26.39 16 13 Si 0.88 21.93 29.54 -169.99 -5.02 16.90 16 14 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 15 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 16 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 17 C 0.10 2.06 5.05 -4.97 -0.03 2.03 16 18 C 0.16 3.13 5.69 -82.59 -0.47 2.66 16 19 C -0.16 -2.71 9.72 -39.44 -0.38 -3.09 16 20 C -0.09 -1.26 10.18 -39.28 -0.40 -1.66 16 21 C -0.19 -2.85 10.11 -39.44 -0.40 -3.25 16 22 C 0.10 1.82 11.18 -17.55 -0.20 1.62 16 23 N -0.44 -9.62 8.88 -9.47 -0.08 -9.71 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.55 8.14 -51.92 -0.42 0.12 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.40 4.45 8.47 -40.82 -0.35 4.11 16 30 H 0.07 1.44 6.46 -51.92 -0.34 1.10 16 31 H 0.08 1.19 7.80 -51.93 -0.41 0.79 16 32 H 0.03 0.99 6.58 -51.93 -0.34 0.65 16 33 H 0.05 1.41 6.43 -51.93 -0.33 1.08 16 34 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 35 H 0.07 1.44 6.31 -51.93 -0.33 1.11 16 36 H 0.07 1.04 7.76 -51.93 -0.40 0.64 16 37 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 38 H 0.12 1.39 8.06 -52.48 -0.42 0.97 16 39 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 40 H 0.15 2.43 8.06 -52.49 -0.42 2.00 16 LS Contribution 333.41 15.07 5.02 5.02 Total: -1.00 -35.71 333.41 -8.37 -44.08 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -5.75 Total: 4.67 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: -2.01 Total: 1.41 kcal Atomic # 7 Polarization: -59.08 SS G_CDS: -0.71 Total: -59.78 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: 0.08 Total: -12.31 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -35.71 -8.37 -44.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178382295.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.525 kcal (2) G-P(sol) polarization free energy of solvation -35.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds