Wall clock time and date at job start Mon Mar 30 2020 20:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46500 * 109.47253 * 2 1 4 4 N 1.40038 * 126.15765 * 275.08908 * 3 2 1 5 5 C 1.30993 * 108.86578 * 180.28424 * 4 3 2 6 6 C 1.39180 * 108.82613 * 359.76674 * 5 4 3 7 7 C 1.36805 * 126.15012 * 94.96547 * 3 2 1 8 8 C 1.46431 * 126.51832 * 359.97438 * 7 3 2 9 9 C 1.35246 * 120.00130 * 184.86282 * 8 7 3 10 10 C 1.46154 * 119.99845 * 174.87860 * 9 8 7 11 11 O 1.21732 * 120.00125 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99824 * 180.02562 * 10 9 8 13 13 C 1.46504 * 119.99643 * 180.02562 * 12 10 9 14 14 C 1.53007 * 109.46958 * 179.72278 * 13 12 10 15 15 C 1.52994 * 109.47093 * 179.97438 * 14 13 12 16 16 C 1.50695 * 109.47148 * 180.02562 * 15 14 13 17 17 H 1.07997 * 119.99916 * 359.97438 * 16 15 14 18 18 C 1.37881 * 120.00046 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00019 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00031 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46792 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46950 * 119.99924 * 20 18 16 23 23 H 1.48499 * 109.47015 * 240.00428 * 20 18 16 24 24 H 1.09004 * 109.47089 * 300.00408 * 1 2 3 25 25 H 1.09005 * 109.47042 * 59.99515 * 1 2 3 26 26 H 1.08990 * 109.47488 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47298 * 240.00347 * 2 1 3 28 28 H 1.08995 * 109.47443 * 120.00083 * 2 1 3 29 29 H 1.07996 * 125.58633 * 179.73793 * 5 4 3 30 30 H 1.07994 * 126.17430 * 180.02562 * 6 5 4 31 31 H 1.07999 * 119.99643 * 4.86351 * 8 7 3 32 32 H 1.07997 * 120.00270 * 354.88434 * 9 8 7 33 33 H 0.96998 * 120.00601 * 359.71855 * 12 10 9 34 34 H 1.09001 * 109.46997 * 299.72199 * 13 12 10 35 35 H 1.09000 * 109.47229 * 59.72041 * 13 12 10 36 36 H 1.08996 * 109.46760 * 299.99638 * 14 13 12 37 37 H 1.08995 * 109.46904 * 59.99986 * 14 13 12 38 38 H 1.09001 * 109.46957 * 299.99979 * 15 14 13 39 39 H 1.09003 * 109.47629 * 59.99731 * 15 14 13 40 40 H 0.97000 * 119.99698 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.1992 2.1936 -1.1262 5 6 2.6545 3.3592 -0.7389 6 6 2.7822 3.3536 0.6470 7 6 2.3775 2.1102 1.1005 8 6 2.3456 1.6588 2.4931 9 6 2.6377 2.5235 3.4912 10 6 2.4977 2.1054 4.8846 11 8 2.1186 0.9787 5.1469 12 7 2.7882 2.9673 5.8792 13 6 2.6484 2.5480 7.2760 14 6 3.0449 3.7033 8.1974 15 6 2.8983 3.2657 9.6561 16 6 3.2882 4.4037 10.5636 17 1 3.6090 5.3449 10.1422 18 6 3.2354 4.2434 11.9321 19 7 2.8443 3.0975 12.4453 20 14 3.7195 5.6540 13.0571 21 1 4.1185 6.8262 12.2374 22 1 2.5648 6.0209 13.9157 23 1 4.8594 5.2363 13.9122 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0275 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 2.8922 4.1885 -1.3886 30 1 3.1331 4.1719 1.2581 31 1 2.0889 0.6353 2.7232 32 1 2.9744 3.5229 3.2585 33 1 3.0942 3.8637 5.6703 34 1 1.6128 2.2680 7.4693 35 1 3.2973 1.6929 7.4654 36 1 4.0804 3.9832 8.0041 37 1 2.3959 4.5583 8.0080 38 1 1.8626 2.9860 9.8491 39 1 3.5469 2.4104 9.8459 40 1 2.8076 2.9847 13.4080 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178895198.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:17:49 Heat of formation + Delta-G solvation = 33.889971 kcal Electronic energy + Delta-G solvation = -19761.749473 eV Core-core repulsion = 16577.893462 eV Total energy + Delta-G solvation = -3183.856011 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.32369 -39.53121 -35.56377 -34.86449 -34.12239 -33.33693 -31.29536 -29.99081 -29.25731 -26.92596 -24.63380 -24.00066 -22.68120 -21.36855 -20.74178 -20.08651 -18.99314 -17.80379 -16.58949 -16.32465 -15.61252 -15.50627 -15.30710 -15.19225 -14.59348 -14.45656 -13.90618 -13.86034 -13.50851 -13.48308 -12.93896 -12.52717 -12.31286 -12.04495 -11.84853 -11.79035 -11.74162 -11.00895 -10.94783 -10.83308 -10.76299 -10.59150 -10.03755 -9.89606 -9.43490 -9.33743 -9.12801 -8.87417 -8.51737 -8.39283 -6.03720 -4.06777 0.38345 1.96150 2.07673 2.59633 3.28857 3.31965 3.35915 3.37056 3.40457 4.10674 4.27715 4.43065 4.55431 4.59836 4.67537 4.81121 4.93812 5.07012 5.25454 5.30815 5.32253 5.44252 5.47683 5.62960 5.65880 5.74430 5.90936 6.01913 6.13131 6.29905 6.42367 6.56784 6.61322 6.79626 6.97308 7.35328 7.61668 7.64718 7.73696 7.95056 8.29363 8.36621 9.00175 9.57613 11.07605 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.040999 B = 0.002270 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.771641 B =12332.826663 C =12886.148803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.125 3.875 3 N -0.361 5.361 4 N -0.289 5.289 5 C 0.042 3.958 6 C -0.245 4.245 7 C 0.099 3.901 8 C -0.028 4.028 9 C -0.165 4.165 10 C 0.538 3.462 11 O -0.548 6.548 12 N -0.716 5.716 13 C 0.115 3.885 14 C -0.121 4.121 15 C 0.023 3.977 16 C -0.522 4.522 17 H 0.056 0.944 18 C 0.056 3.944 19 N -0.894 5.894 20 Si 0.893 3.107 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.064 0.936 25 H 0.065 0.935 26 H 0.079 0.921 27 H 0.096 0.904 28 H 0.097 0.903 29 H 0.185 0.815 30 H 0.153 0.847 31 H 0.139 0.861 32 H 0.135 0.865 33 H 0.401 0.599 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.019 0.981 39 H 0.019 0.981 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.395 -2.031 -26.146 26.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.004 3.996 3 N -0.145 5.145 4 N -0.111 5.111 5 C -0.142 4.142 6 C -0.274 4.274 7 C -0.027 4.027 8 C -0.050 4.050 9 C -0.188 4.188 10 C 0.325 3.675 11 O -0.428 6.428 12 N -0.366 5.366 13 C -0.007 4.007 14 C -0.159 4.159 15 C -0.015 4.015 16 C -0.560 4.560 17 H 0.074 0.926 18 C -0.145 4.145 19 N -0.533 5.533 20 Si 0.721 3.279 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.210 1.210 24 H 0.083 0.917 25 H 0.084 0.916 26 H 0.098 0.902 27 H 0.114 0.886 28 H 0.115 0.885 29 H 0.202 0.798 30 H 0.171 0.829 31 H 0.157 0.843 32 H 0.152 0.848 33 H 0.235 0.765 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.037 0.963 39 H 0.037 0.963 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.101 -3.780 -26.795 27.141 hybrid contribution 0.660 1.708 1.319 2.257 sum -1.441 -2.072 -25.475 25.600 Atomic orbital electron populations 1.22189 0.93905 1.03371 1.03409 1.21771 0.95646 0.77481 1.04682 1.49172 1.50115 1.11903 1.03310 1.77302 1.22207 1.03443 1.08112 1.23683 0.99258 0.96025 0.95194 1.21903 1.12697 0.97663 0.95151 1.20146 1.01745 0.92554 0.88289 1.21408 0.95749 1.00162 0.87680 1.23029 1.02623 1.00934 0.92248 1.18172 0.78336 0.85259 0.85698 1.90828 1.46959 1.19947 1.85022 1.46111 1.67014 1.16285 1.07188 1.21691 1.01796 0.99108 0.78139 1.21894 1.00358 0.95874 0.97787 1.19037 0.97601 0.96964 0.87860 1.21238 1.44769 0.98902 0.91104 0.92567 1.25040 0.95334 0.95749 0.98407 1.69975 1.47518 1.23860 1.11923 0.86523 0.78178 0.82450 0.80761 1.19746 1.20999 1.20994 0.91728 0.91565 0.90226 0.88571 0.88476 0.79787 0.82928 0.84332 0.84771 0.76530 0.91598 0.91588 0.92647 0.92648 0.96257 0.96258 0.92969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.09 10.24 37.16 0.38 -0.71 16 2 C 0.13 0.88 7.05 -4.04 -0.03 0.85 16 3 N -0.36 -3.59 3.67 -57.32 -0.21 -3.80 16 4 N -0.29 -3.14 12.54 30.51 0.38 -2.76 16 5 C 0.04 0.37 11.96 -17.56 -0.21 0.16 16 6 C -0.25 -2.19 10.21 -39.17 -0.40 -2.59 16 7 C 0.10 0.98 6.91 -82.29 -0.57 0.41 16 8 C -0.03 -0.29 9.29 -37.35 -0.35 -0.63 16 9 C -0.16 -1.68 9.54 -37.47 -0.36 -2.03 16 10 C 0.54 7.55 7.73 -13.08 -0.10 7.45 16 11 O -0.55 -9.81 16.24 5.16 0.08 -9.73 16 12 N -0.72 -9.73 5.55 -61.78 -0.34 -10.08 16 13 C 0.12 1.96 5.67 -4.04 -0.02 1.94 16 14 C -0.12 -2.30 5.27 -26.73 -0.14 -2.44 16 15 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 16 C -0.52 -14.42 9.11 -34.44 -0.31 -14.73 16 17 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 18 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 19 N -0.89 -26.65 13.29 55.43 0.74 -25.91 16 20 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 21 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.10 0.56 7.21 -51.93 -0.37 0.18 16 29 H 0.19 1.03 8.06 -52.49 -0.42 0.60 16 30 H 0.15 1.01 7.28 -52.49 -0.38 0.63 16 31 H 0.14 1.41 6.83 -52.49 -0.36 1.05 16 32 H 0.13 0.98 6.92 -52.49 -0.36 0.61 16 33 H 0.40 4.22 8.45 -40.82 -0.34 3.87 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 347.78 15.07 5.24 5.24 Total: -1.00 -34.11 347.78 -7.49 -41.60 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -6.02 Total: -0.48 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: -2.35 Total: -10.39 kcal Atomic # 7 Polarization: -43.10 SS G_CDS: 0.57 Total: -42.54 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.08 Total: -9.73 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.11 -7.49 -41.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178895198.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.489 kcal (2) G-P(sol) polarization free energy of solvation -34.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds