Wall clock time and date at job start Mon Mar 30 2020 20:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46500 * 109.47253 * 2 1 4 4 N 1.40038 * 126.15765 * 275.08908 * 3 2 1 5 5 C 1.30993 * 108.86578 * 180.28424 * 4 3 2 6 6 C 1.39180 * 108.82613 * 359.76674 * 5 4 3 7 7 C 1.36805 * 126.15012 * 94.96547 * 3 2 1 8 8 C 1.46431 * 126.51832 * 359.97438 * 7 3 2 9 9 C 1.35246 * 120.00130 * 184.86282 * 8 7 3 10 10 C 1.46154 * 119.99845 * 174.87860 * 9 8 7 11 11 O 1.21732 * 120.00125 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99824 * 180.02562 * 10 9 8 13 13 C 1.46504 * 119.99643 * 180.02562 * 12 10 9 14 14 C 1.53007 * 109.46958 * 179.72278 * 13 12 10 15 15 C 1.52994 * 109.47093 * 179.97438 * 14 13 12 16 16 C 1.50695 * 109.47148 * 180.02562 * 15 14 13 17 17 H 1.07997 * 119.99916 * 359.97438 * 16 15 14 18 18 C 1.37881 * 120.00046 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00019 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00031 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46792 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46950 * 119.99924 * 20 18 16 23 23 H 1.48499 * 109.47015 * 240.00428 * 20 18 16 24 24 H 1.09004 * 109.47089 * 300.00408 * 1 2 3 25 25 H 1.09005 * 109.47042 * 59.99515 * 1 2 3 26 26 H 1.08990 * 109.47488 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47298 * 240.00347 * 2 1 3 28 28 H 1.08995 * 109.47443 * 120.00083 * 2 1 3 29 29 H 1.07996 * 125.58633 * 179.73793 * 5 4 3 30 30 H 1.07994 * 126.17430 * 180.02562 * 6 5 4 31 31 H 1.07999 * 119.99643 * 4.86351 * 8 7 3 32 32 H 1.07997 * 120.00270 * 354.88434 * 9 8 7 33 33 H 0.96998 * 120.00601 * 359.71855 * 12 10 9 34 34 H 1.09001 * 109.46997 * 299.72199 * 13 12 10 35 35 H 1.09000 * 109.47229 * 59.72041 * 13 12 10 36 36 H 1.08996 * 109.46760 * 299.99638 * 14 13 12 37 37 H 1.08995 * 109.46904 * 59.99986 * 14 13 12 38 38 H 1.09001 * 109.46957 * 299.99979 * 15 14 13 39 39 H 1.09003 * 109.47629 * 59.99731 * 15 14 13 40 40 H 0.97000 * 119.99698 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.1992 2.1936 -1.1262 5 6 2.6545 3.3592 -0.7389 6 6 2.7822 3.3536 0.6470 7 6 2.3775 2.1102 1.1005 8 6 2.3456 1.6588 2.4931 9 6 2.6377 2.5235 3.4912 10 6 2.4977 2.1054 4.8846 11 8 2.1186 0.9787 5.1469 12 7 2.7882 2.9673 5.8792 13 6 2.6484 2.5480 7.2760 14 6 3.0449 3.7033 8.1974 15 6 2.8983 3.2657 9.6561 16 6 3.2882 4.4037 10.5636 17 1 3.6090 5.3449 10.1422 18 6 3.2354 4.2434 11.9321 19 7 2.8443 3.0975 12.4453 20 14 3.7195 5.6540 13.0571 21 1 4.1185 6.8262 12.2374 22 1 2.5648 6.0209 13.9157 23 1 4.8594 5.2363 13.9122 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0275 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 2.8922 4.1885 -1.3886 30 1 3.1331 4.1719 1.2581 31 1 2.0889 0.6353 2.7232 32 1 2.9744 3.5229 3.2585 33 1 3.0942 3.8637 5.6703 34 1 1.6128 2.2680 7.4693 35 1 3.2973 1.6929 7.4654 36 1 4.0804 3.9832 8.0041 37 1 2.3959 4.5583 8.0080 38 1 1.8626 2.9860 9.8491 39 1 3.5469 2.4104 9.8459 40 1 2.8076 2.9847 13.4080 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178895198.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:17:49 Heat of formation + Delta-G solvation = 11.480390 kcal Electronic energy + Delta-G solvation = -19762.721225 eV Core-core repulsion = 16577.893462 eV Total energy + Delta-G solvation = -3184.827763 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.00434 -40.69736 -37.02619 -35.46803 -35.18500 -34.97089 -33.02728 -30.69382 -30.05269 -28.59391 -25.83614 -24.80439 -24.01566 -22.31380 -22.14424 -21.08900 -19.87298 -18.63193 -18.51885 -17.32149 -16.88847 -16.67158 -16.42011 -16.15701 -15.85622 -15.32875 -15.21228 -14.95382 -14.34199 -14.21033 -14.17702 -13.72027 -13.54777 -13.47769 -13.09871 -12.77733 -12.74960 -12.53685 -12.33315 -12.28903 -11.74134 -11.67633 -11.61804 -11.57793 -11.22649 -10.96272 -10.55231 -10.17450 -9.96046 -9.27295 -8.18850 -6.30023 -0.41684 1.20474 1.42726 1.42886 1.44424 1.56087 1.87951 2.23145 2.37315 2.43794 3.15180 3.46361 3.55727 3.88437 4.03342 4.06914 4.11230 4.20857 4.23728 4.30018 4.44367 4.57319 4.68791 4.73647 4.84386 4.87988 4.96291 4.98302 5.11588 5.12924 5.20006 5.28616 5.44106 5.54600 5.69631 5.72473 5.85719 5.95916 6.23409 6.58428 6.68029 6.88114 7.22597 7.39681 8.93466 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.040999 B = 0.002270 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.771641 B =12332.826663 C =12886.148803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.116 3.884 3 N -0.369 5.369 4 N -0.318 5.318 5 C 0.038 3.962 6 C -0.242 4.242 7 C 0.081 3.919 8 C -0.016 4.016 9 C -0.164 4.164 10 C 0.536 3.464 11 O -0.594 6.594 12 N -0.705 5.705 13 C 0.128 3.872 14 C -0.102 4.102 15 C 0.022 3.978 16 C -0.539 4.539 17 H 0.067 0.933 18 C -0.005 4.005 19 N -0.936 5.936 20 Si 0.967 3.033 21 H -0.257 1.257 22 H -0.281 1.281 23 H -0.281 1.281 24 H 0.051 0.949 25 H 0.055 0.945 26 H 0.099 0.901 27 H 0.105 0.895 28 H 0.107 0.893 29 H 0.214 0.786 30 H 0.178 0.822 31 H 0.131 0.869 32 H 0.170 0.830 33 H 0.419 0.581 34 H 0.050 0.950 35 H 0.051 0.949 36 H 0.069 0.931 37 H 0.069 0.931 38 H -0.008 1.008 39 H -0.008 1.008 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.587 0.109 -27.440 27.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.004 4.004 3 N -0.153 5.153 4 N -0.141 5.141 5 C -0.145 4.145 6 C -0.271 4.271 7 C -0.045 4.045 8 C -0.038 4.038 9 C -0.187 4.187 10 C 0.326 3.674 11 O -0.477 6.477 12 N -0.356 5.356 13 C 0.004 3.996 14 C -0.140 4.140 15 C -0.016 4.016 16 C -0.577 4.577 17 H 0.086 0.914 18 C -0.203 4.203 19 N -0.576 5.576 20 Si 0.792 3.208 21 H -0.181 1.181 22 H -0.207 1.207 23 H -0.206 1.206 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.118 0.882 27 H 0.124 0.876 28 H 0.125 0.875 29 H 0.231 0.769 30 H 0.196 0.804 31 H 0.149 0.851 32 H 0.188 0.812 33 H 0.257 0.743 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.010 0.990 39 H 0.010 0.990 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.282 -1.604 -28.121 28.196 hybrid contribution 0.390 0.985 1.649 1.960 sum -0.892 -0.619 -26.472 26.495 Atomic orbital electron populations 1.22136 0.93562 1.04323 1.02159 1.22003 0.95950 0.76756 1.05656 1.49423 1.50196 1.12597 1.03113 1.77264 1.23249 1.04518 1.09048 1.24249 0.98243 0.96156 0.95847 1.22307 1.11576 0.97750 0.95462 1.20247 1.02817 0.93361 0.88104 1.21387 0.94521 0.99868 0.87997 1.22916 1.03746 1.02572 0.89505 1.18741 0.77088 0.84430 0.87095 1.90812 1.49047 1.21968 1.85842 1.45850 1.66913 1.17269 1.05551 1.21258 1.00448 0.97869 0.79990 1.21597 1.01627 0.96636 0.94115 1.18960 0.95138 0.95676 0.91816 1.21720 1.44294 0.99793 0.91854 0.91446 1.26035 0.95300 0.98509 1.00408 1.70119 1.48875 1.26244 1.12384 0.85366 0.77761 0.79245 0.78463 1.18115 1.20663 1.20647 0.93026 0.92579 0.88218 0.87631 0.87490 0.76943 0.80440 0.85107 0.81228 0.74336 0.93135 0.93097 0.91189 0.91219 0.98983 0.98966 0.92851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 10.24 71.98 0.74 -1.28 16 2 C 0.12 1.55 7.05 86.38 0.61 2.16 16 3 N -0.37 -6.95 3.67 -335.27 -1.23 -8.18 16 4 N -0.32 -6.52 12.54 -57.40 -0.72 -7.24 16 5 C 0.04 0.59 11.96 85.04 1.02 1.60 16 6 C -0.24 -3.65 10.21 22.54 0.23 -3.42 16 7 C 0.08 1.47 6.91 40.54 0.28 1.75 16 8 C -0.02 -0.30 9.29 23.71 0.22 -0.08 16 9 C -0.16 -2.98 9.54 23.64 0.23 -2.76 16 10 C 0.54 14.51 7.73 86.30 0.67 15.17 16 11 O -0.59 -21.47 16.24 -4.45 -0.07 -21.55 16 12 N -0.71 -18.06 5.55 -467.57 -2.60 -20.65 16 13 C 0.13 4.37 5.67 86.38 0.49 4.86 16 14 C -0.10 -3.79 5.27 30.59 0.16 -3.62 16 15 C 0.02 1.12 4.97 29.84 0.15 1.27 16 16 C -0.54 -29.68 9.11 25.60 0.23 -29.44 16 17 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 18 C -0.01 -0.29 5.46 84.66 0.46 0.17 16 19 N -0.94 -56.88 13.29 21.45 0.28 -56.59 16 20 Si 0.97 43.43 29.54 68.60 2.03 45.45 16 21 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 22 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 23 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 24 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 25 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 26 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.11 1.17 8.14 -2.38 -0.02 1.15 16 28 H 0.11 1.17 7.21 -2.39 -0.02 1.15 16 29 H 0.21 1.75 8.06 -2.91 -0.02 1.72 16 30 H 0.18 1.63 7.28 -2.91 -0.02 1.61 16 31 H 0.13 2.62 6.83 -2.91 -0.02 2.60 16 32 H 0.17 1.80 6.92 -2.91 -0.02 1.78 16 33 H 0.42 7.60 8.45 -92.71 -0.78 6.82 16 34 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 37 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 38 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 39 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 40 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -74.90 347.78 3.42 -71.48 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: 0.25 Total: 10.88 kcal Atomic # 6 Polarization: -19.09 SS G_CDS: 5.48 Total: -13.61 kcal Atomic # 7 Polarization: -88.40 SS G_CDS: -4.26 Total: -92.66 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: -0.07 Total: -21.55 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.45 kcal Total: -74.90 3.42 -71.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178895198.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.962 kcal (2) G-P(sol) polarization free energy of solvation -74.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds