Wall clock time and date at job start Mon Mar 30 2020 20:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46504 * 109.47112 * 2 1 4 4 N 1.40035 * 126.15370 * 273.58607 * 3 2 1 5 5 C 1.30990 * 108.86153 * 180.25061 * 4 3 2 6 6 C 1.39175 * 108.83029 * 359.76377 * 5 4 3 7 7 C 1.36801 * 126.14976 * 93.42126 * 3 2 1 8 8 C 1.46426 * 126.51800 * 0.02562 * 7 3 2 9 9 C 1.35252 * 120.00028 * 58.49995 * 8 7 3 10 10 C 1.46149 * 119.99836 * 7.16142 * 9 8 7 11 11 O 1.21728 * 120.00460 * 5.90226 * 10 9 8 12 12 N 1.34781 * 119.99629 * 185.90380 * 10 9 8 13 13 C 1.46499 * 120.00349 * 5.40561 * 12 10 9 14 14 C 1.46499 * 119.99729 * 185.40609 * 12 10 9 15 15 H 1.08998 * 109.47285 * 356.04120 * 14 12 10 16 16 C 1.53000 * 109.47468 * 236.04228 * 14 12 10 17 17 C 1.50709 * 109.47202 * 116.04367 * 14 12 10 18 18 H 1.07998 * 119.99296 * 359.97438 * 17 14 12 19 19 C 1.37874 * 119.99886 * 180.02562 * 17 14 12 20 20 N 1.31505 * 120.00204 * 359.97438 * 19 17 14 21 21 Si 1.86803 * 119.99509 * 179.97438 * 19 17 14 22 22 H 1.48498 * 109.47108 * 179.97438 * 21 19 17 23 23 H 1.48500 * 109.47400 * 299.99702 * 21 19 17 24 24 H 1.48499 * 109.46991 * 59.99973 * 21 19 17 25 25 H 1.08997 * 109.47284 * 64.98006 * 1 2 3 26 26 H 1.09002 * 109.47187 * 184.98247 * 1 2 3 27 27 H 1.08997 * 109.47120 * 304.97556 * 1 2 3 28 28 H 1.09008 * 109.47043 * 240.00209 * 2 1 3 29 29 H 1.08999 * 109.47460 * 119.99862 * 2 1 3 30 30 H 1.08001 * 125.58641 * 179.73611 * 5 4 3 31 31 H 1.08001 * 126.18179 * 180.02562 * 6 5 4 32 32 H 1.08004 * 120.00124 * 238.49726 * 8 7 3 33 33 H 1.08002 * 119.99827 * 187.16092 * 9 8 7 34 34 H 1.09000 * 109.47291 * 270.00112 * 13 12 10 35 35 H 1.08999 * 109.46600 * 30.00205 * 13 12 10 36 36 H 1.09001 * 109.47350 * 149.99634 * 13 12 10 37 37 H 1.09007 * 109.47002 * 300.00276 * 16 14 12 38 38 H 1.08997 * 109.46810 * 59.99775 * 16 14 12 39 39 H 1.08994 * 109.47434 * 180.02562 * 16 14 12 40 40 H 0.97002 * 119.99692 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2270 2.1837 -1.1285 5 6 2.6720 3.3530 -0.7402 6 6 2.7648 3.3598 0.6484 7 6 2.3494 2.1201 1.1027 8 6 2.2832 1.6809 2.4979 9 6 2.9877 0.5988 2.9004 10 6 3.9344 -0.0380 1.9870 11 8 4.1688 0.4666 0.9043 12 7 4.5477 -1.1840 2.3434 13 6 4.1791 -1.8543 3.5928 14 6 5.5831 -1.7593 1.4814 15 1 5.6700 -1.1652 0.5717 16 6 5.2036 -3.1962 1.1177 17 6 6.9021 -1.7574 2.2105 18 1 6.9629 -1.3663 3.2154 19 6 8.0311 -2.2540 1.5944 20 7 7.9570 -2.7297 0.3706 21 14 9.6660 -2.2509 2.4980 22 1 10.7156 -2.8342 1.6243 23 1 10.0340 -0.8562 2.8509 24 1 9.5481 -3.0605 3.7373 25 1 -0.3634 0.4346 -0.9312 26 1 -0.3634 -1.0238 0.0893 27 1 -0.3633 0.5891 0.8420 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8900 30 1 2.9256 4.1766 -1.3911 31 1 3.1001 4.1837 1.2610 32 1 1.6717 2.2210 3.2057 33 1 2.8508 0.2053 3.8969 34 1 4.8046 -1.4810 4.4037 35 1 3.1322 -1.6516 3.8186 36 1 4.3262 -2.9290 3.4857 37 1 5.1167 -3.7904 2.0274 38 1 4.2497 -3.1976 0.5904 39 1 5.9742 -3.6244 0.4767 40 1 8.7513 -3.0794 -0.0627 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255563047.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:18:02 Heat of formation + Delta-G solvation = 72.685598 kcal Electronic energy + Delta-G solvation = -22271.382700 eV Core-core repulsion = 19089.208993 eV Total energy + Delta-G solvation = -3182.173706 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.67071 -39.01449 -35.54798 -34.16442 -33.41435 -32.79118 -29.82190 -29.08927 -28.53672 -26.24209 -25.22876 -24.10990 -23.19379 -20.93898 -20.53677 -19.43827 -17.93204 -17.02031 -16.40820 -16.01568 -15.18122 -14.79832 -14.70385 -14.32401 -14.06434 -13.72130 -13.66944 -13.14679 -12.75844 -12.66474 -12.53257 -12.21654 -12.11010 -11.85156 -11.57577 -11.45692 -11.14659 -11.07645 -10.83356 -10.73016 -10.29894 -10.28062 -10.17897 -9.69346 -9.26396 -9.11638 -8.53564 -8.42874 -7.94043 -7.59929 -6.08572 -4.17004 1.14325 2.43238 2.93842 3.26554 3.26911 3.32166 3.33779 3.80562 3.98131 4.38769 4.73711 4.80264 5.04365 5.10948 5.22492 5.23781 5.35610 5.46981 5.63694 5.65389 5.75810 5.91030 5.97626 6.02861 6.05685 6.13595 6.21857 6.28702 6.44250 6.71048 6.76441 6.99883 7.09063 7.39091 7.42842 7.49494 7.68602 7.99483 8.16487 8.17506 8.46967 8.80529 9.00472 9.49652 10.96484 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022126 B = 0.005157 C = 0.004982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.198703 B = 5428.101891 C = 5618.580889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.135 3.865 3 N -0.330 5.330 4 N -0.295 5.295 5 C 0.039 3.961 6 C -0.264 4.264 7 C 0.130 3.870 8 C -0.039 4.039 9 C -0.178 4.178 10 C 0.517 3.483 11 O -0.531 6.531 12 N -0.587 5.587 13 C 0.084 3.916 14 C 0.259 3.741 15 H 0.063 0.937 16 C -0.146 4.146 17 C -0.526 4.526 18 H 0.057 0.943 19 C 0.065 3.935 20 N -0.888 5.888 21 Si 0.899 3.101 22 H -0.286 1.286 23 H -0.277 1.277 24 H -0.277 1.277 25 H 0.063 0.937 26 H 0.073 0.927 27 H 0.058 0.942 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.175 0.825 31 H 0.141 0.859 32 H 0.145 0.855 33 H 0.136 0.864 34 H 0.049 0.951 35 H 0.052 0.948 36 H 0.074 0.926 37 H 0.031 0.969 38 H 0.010 0.990 39 H 0.094 0.906 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.198 5.094 5.489 16.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.013 3.987 3 N -0.112 5.112 4 N -0.118 5.118 5 C -0.145 4.145 6 C -0.293 4.293 7 C 0.002 3.998 8 C -0.060 4.060 9 C -0.201 4.201 10 C 0.305 3.695 11 O -0.411 6.411 12 N -0.318 5.318 13 C -0.060 4.060 14 C 0.159 3.841 15 H 0.081 0.919 16 C -0.205 4.205 17 C -0.565 4.565 18 H 0.076 0.924 19 C -0.138 4.138 20 N -0.526 5.526 21 Si 0.726 3.274 22 H -0.211 1.211 23 H -0.202 1.202 24 H -0.202 1.202 25 H 0.082 0.918 26 H 0.092 0.908 27 H 0.077 0.923 28 H 0.110 0.890 29 H 0.105 0.895 30 H 0.192 0.808 31 H 0.158 0.842 32 H 0.163 0.837 33 H 0.154 0.846 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.093 0.907 37 H 0.050 0.950 38 H 0.029 0.971 39 H 0.112 0.888 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.290 4.359 3.722 15.396 hybrid contribution 1.430 0.346 1.468 2.078 sum -12.860 4.704 5.191 14.644 Atomic orbital electron populations 1.22201 0.94861 1.02635 1.02806 1.21542 0.93858 0.78687 1.04609 1.48705 1.49168 1.10798 1.02573 1.77155 1.23104 1.03364 1.08148 1.23397 1.00315 0.95817 0.94947 1.21520 1.15191 0.97774 0.94849 1.19808 1.00241 0.91634 0.88140 1.21677 0.97496 0.94933 0.91929 1.23654 0.97673 0.97554 1.01183 1.18284 0.82381 0.81775 0.87030 1.90892 1.64604 1.63022 1.22543 1.48189 1.38448 1.22767 1.22385 1.21609 0.98147 0.99176 0.87066 1.18924 0.83570 0.90840 0.90724 0.91948 1.22093 0.99174 0.99110 1.00099 1.21281 0.92673 1.41331 1.01220 0.92435 1.24890 0.98992 0.94976 0.94900 1.69861 1.29554 1.40827 1.12372 0.86549 0.82982 0.78379 0.79444 1.21139 1.20242 1.20231 0.91784 0.90785 0.92310 0.88972 0.89543 0.80795 0.84155 0.83714 0.84584 0.93223 0.92908 0.90724 0.95035 0.97061 0.88772 0.92609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.91 10.24 37.16 0.38 -1.53 16 2 C 0.13 2.07 6.06 -4.04 -0.02 2.05 16 3 N -0.33 -5.82 2.64 -57.32 -0.15 -5.97 16 4 N -0.30 -5.54 12.54 30.51 0.38 -5.15 16 5 C 0.04 0.63 11.96 -17.56 -0.21 0.42 16 6 C -0.26 -4.25 10.84 -39.17 -0.42 -4.67 16 7 C 0.13 2.15 4.60 -82.29 -0.38 1.77 16 8 C -0.04 -0.52 9.83 -37.35 -0.37 -0.88 16 9 C -0.18 -2.57 8.41 -37.47 -0.32 -2.89 16 10 C 0.52 10.34 5.85 -13.08 -0.08 10.26 16 11 O -0.53 -12.74 11.88 5.16 0.06 -12.68 16 12 N -0.59 -12.12 2.75 -177.00 -0.49 -12.61 16 13 C 0.08 1.33 9.40 59.85 0.56 1.89 16 14 C 0.26 6.56 2.64 -69.08 -0.18 6.38 16 15 H 0.06 1.86 6.91 -51.93 -0.36 1.51 16 16 C -0.15 -3.43 8.87 37.16 0.33 -3.10 16 17 C -0.53 -14.27 8.43 -34.44 -0.29 -14.56 16 18 H 0.06 1.54 7.77 -52.49 -0.41 1.13 16 19 C 0.06 1.78 5.30 -17.82 -0.09 1.69 16 20 N -0.89 -25.31 11.32 55.43 0.63 -24.68 16 21 Si 0.90 21.20 29.54 -169.99 -5.02 16.17 16 22 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.09 1.52 8.14 -51.92 -0.42 1.10 16 29 H 0.09 1.35 5.32 -51.93 -0.28 1.08 16 30 H 0.18 2.22 8.06 -52.49 -0.42 1.80 16 31 H 0.14 1.89 8.06 -52.49 -0.42 1.47 16 32 H 0.15 1.30 8.06 -52.48 -0.42 0.88 16 33 H 0.14 1.49 6.49 -52.49 -0.34 1.15 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.05 0.63 6.44 -51.93 -0.33 0.29 16 36 H 0.07 1.20 6.23 -51.93 -0.32 0.87 16 37 H 0.03 0.67 6.54 -51.93 -0.34 0.33 16 38 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 39 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 40 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 327.53 15.07 4.94 4.94 Total: -1.00 -33.62 327.53 -6.38 -40.00 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -5.64 Total: 3.15 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -1.09 Total: -3.17 kcal Atomic # 7 Polarization: -48.79 SS G_CDS: 0.37 Total: -48.42 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: 0.06 Total: -12.68 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.62 -6.38 -40.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255563047.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.690 kcal (2) G-P(sol) polarization free energy of solvation -33.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds