Wall clock time and date at job start Mon Mar 30 2020 20:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08993 * 109.47560 * 2 1 4 4 C 1.50709 * 109.47094 * 239.99904 * 2 1 3 5 5 O 1.21281 * 120.00061 * 261.34834 * 4 2 1 6 6 N 1.34772 * 119.99708 * 81.35107 * 4 2 1 7 7 C 1.46503 * 120.00066 * 183.05380 * 6 4 2 8 8 C 1.50706 * 109.46574 * 269.99660 * 7 6 4 9 9 H 1.07990 * 120.00043 * 359.97438 * 8 7 6 10 10 C 1.37881 * 119.99368 * 179.97438 * 8 7 6 11 11 N 1.31507 * 120.00346 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 119.99689 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.46970 * 59.99874 * 12 10 8 14 14 H 1.48499 * 109.47054 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.47221 * 300.00195 * 12 10 8 16 16 C 1.46503 * 119.99978 * 3.04513 * 6 4 2 17 17 C 1.53000 * 109.47584 * 265.40799 * 16 6 4 18 18 C 1.52995 * 117.50316 * 242.54368 * 17 16 6 19 19 C 1.52994 * 117.50169 * 173.87928 * 17 16 6 20 20 N 1.46506 * 109.47679 * 120.00352 * 2 1 3 21 21 C 1.34950 * 126.03515 * 34.70814 * 20 2 1 22 22 C 1.35313 * 107.74464 * 179.84743 * 21 20 2 23 23 C 1.39865 * 107.92240 * 0.42304 * 22 21 20 24 24 N 1.30846 * 108.20276 * 359.73944 * 23 22 21 25 25 H 1.09002 * 109.46962 * 175.68248 * 1 2 3 26 26 H 1.09002 * 109.46666 * 295.67880 * 1 2 3 27 27 H 1.08998 * 109.47408 * 55.68080 * 1 2 3 28 28 H 1.08992 * 109.47626 * 149.99773 * 7 6 4 29 29 H 1.09001 * 109.46781 * 29.99207 * 7 6 4 30 30 H 0.97003 * 120.00014 * 179.97438 * 11 10 8 31 31 H 1.08999 * 109.47159 * 25.41372 * 16 6 4 32 32 H 1.09011 * 109.46847 * 145.41160 * 16 6 4 33 33 H 1.09008 * 115.54414 * 28.21250 * 17 16 6 34 34 H 1.09003 * 117.49740 * 359.97438 * 18 17 16 35 35 H 1.09000 * 117.50092 * 145.01642 * 18 17 16 36 36 H 1.09000 * 117.49885 * 214.98109 * 19 17 16 37 37 H 1.09001 * 117.50027 * 0.02562 * 19 17 16 38 38 H 1.08001 * 126.12327 * 0.02562 * 21 20 2 39 39 H 1.07997 * 126.03839 * 180.16789 * 22 21 20 40 40 H 1.08002 * 125.90105 * 179.71579 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.3834 -1.8693 -1.1608 6 7 2.0914 -0.0581 -2.4083 7 6 2.5161 -0.7671 -3.6180 8 6 4.0114 -0.6538 -3.7676 9 1 4.5875 -0.1080 -3.0353 10 6 4.6437 -1.2472 -4.8396 11 7 3.9420 -1.9114 -5.7317 12 14 6.4971 -1.1063 -5.0256 13 1 7.1605 -1.7067 -3.8404 14 1 6.9278 -1.8261 -6.2510 15 1 6.8764 0.3254 -5.1328 16 6 1.7308 1.3601 -2.4790 17 6 0.2617 1.4933 -2.8853 18 6 -0.0446 2.2023 -4.2060 19 6 -0.3495 2.8958 -2.8759 20 7 2.0184 -0.6907 1.1961 21 6 1.4373 -1.7526 1.7926 22 6 2.1967 -2.0928 2.8597 23 6 3.2735 -1.2026 2.9230 24 7 3.1677 -0.3615 1.9263 25 1 -0.3633 -1.0248 -0.0774 26 1 -0.3633 0.4453 0.9262 27 1 -0.3634 0.5794 -0.8487 28 1 2.0295 -0.3257 -4.4876 29 1 2.2373 -1.8179 -3.5399 30 1 4.3869 -2.3285 -6.4861 31 1 1.8814 1.8224 -1.5035 32 1 2.3587 1.8583 -3.2179 33 1 -0.3823 0.6616 -2.5993 34 1 0.8005 2.5743 -4.7853 35 1 -0.8904 1.8374 -4.7888 36 1 -1.3958 2.9869 -2.5842 37 1 0.2950 3.7238 -2.5807 38 1 0.5305 -2.2447 1.4735 39 1 2.0030 -2.9054 3.5441 40 1 4.0569 -1.2081 3.6665 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264071117.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:18:11 Heat of formation + Delta-G solvation = 78.474650 kcal Electronic energy + Delta-G solvation = -22021.451688 eV Core-core repulsion = 18839.529014 eV Total energy + Delta-G solvation = -3181.922674 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.05602 -39.30288 -37.26762 -34.56320 -34.27716 -32.51432 -29.89201 -29.41867 -27.90492 -26.35287 -24.66125 -22.83542 -22.25250 -20.97105 -20.79507 -20.47998 -18.51919 -17.12781 -16.95773 -16.49934 -15.61524 -15.02640 -14.72867 -14.54619 -14.18304 -14.05444 -13.64437 -13.35415 -13.08698 -12.58910 -12.51501 -12.40773 -12.16502 -12.00623 -11.57371 -11.47443 -11.41101 -11.25704 -10.93536 -10.65194 -10.45621 -10.33864 -10.15110 -9.80873 -9.67768 -9.48976 -8.95568 -8.45016 -8.25693 -7.80735 -6.06621 -4.11054 2.11915 2.60114 3.10924 3.19350 3.31669 3.35820 3.40456 3.70538 3.92930 4.43532 4.58533 4.71702 4.81835 4.92427 4.99342 5.03478 5.14447 5.19133 5.28249 5.43369 5.47360 5.60976 5.66333 5.67388 5.73852 5.88222 5.92657 6.01329 6.03504 6.20351 6.22966 6.36508 6.85376 6.96616 7.22393 7.35356 7.44961 7.89236 7.95621 8.19408 8.25399 8.80273 8.96276 9.53927 11.01530 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.012310 B = 0.006781 C = 0.004806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.986786 B = 4128.346207 C = 5824.707445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.138 3.862 3 H 0.119 0.881 4 C 0.496 3.504 5 O -0.522 6.522 6 N -0.586 5.586 7 C 0.250 3.750 8 C -0.528 4.528 9 H 0.056 0.944 10 C 0.063 3.937 11 N -0.895 5.895 12 Si 0.897 3.103 13 H -0.276 1.276 14 H -0.286 1.286 15 H -0.276 1.276 16 C 0.136 3.864 17 C -0.173 4.173 18 C -0.171 4.171 19 C -0.181 4.181 20 N -0.349 5.349 21 C 0.076 3.924 22 C -0.284 4.284 23 C 0.042 3.958 24 N -0.296 5.296 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.096 0.904 28 H 0.037 0.963 29 H 0.042 0.958 30 H 0.264 0.736 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.107 0.893 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.168 0.832 39 H 0.144 0.856 40 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.620 7.587 11.018 17.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.031 3.969 3 H 0.136 0.864 4 C 0.279 3.721 5 O -0.398 6.398 6 N -0.317 5.317 7 C 0.131 3.869 8 C -0.567 4.567 9 H 0.075 0.925 10 C -0.139 4.139 11 N -0.534 5.534 12 Si 0.725 3.275 13 H -0.202 1.202 14 H -0.211 1.211 15 H -0.202 1.202 16 C 0.011 3.989 17 C -0.192 4.192 18 C -0.208 4.208 19 C -0.218 4.218 20 N -0.131 5.131 21 C -0.071 4.071 22 C -0.313 4.313 23 C -0.144 4.144 24 N -0.117 5.117 25 H 0.089 0.911 26 H 0.093 0.907 27 H 0.114 0.886 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.106 0.894 33 H 0.125 0.875 34 H 0.117 0.883 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.113 0.887 38 H 0.185 0.815 39 H 0.162 0.838 40 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -9.922 7.917 10.127 16.238 hybrid contribution 0.723 -0.738 0.101 1.038 sum -9.199 7.178 10.229 15.517 Atomic orbital electron populations 1.22254 0.91036 1.04306 1.04572 1.21275 0.95997 0.97491 0.82111 0.86370 1.20333 0.79831 0.87556 0.84354 1.90727 1.47704 1.16972 1.84369 1.48185 1.64168 1.09789 1.09577 1.19305 0.94951 0.93040 0.79600 1.21382 0.92342 1.34181 1.08760 0.92539 1.24906 0.98531 0.94883 0.95601 1.69914 1.35806 1.34654 1.12983 0.86572 0.85273 0.78194 0.77508 1.20166 1.21110 1.20193 1.21160 0.92465 0.83419 1.01832 1.22978 0.97839 0.95729 1.02685 1.23023 1.03567 1.03647 0.90590 1.22965 1.01272 0.95403 1.02202 1.48293 1.19125 1.24496 1.21155 1.22378 0.99785 0.90629 0.94261 1.21387 0.99578 1.06481 1.03893 1.23794 0.99109 0.94336 0.97198 1.77344 1.02315 1.24801 1.07216 0.91061 0.90687 0.88593 0.94504 0.94043 0.92646 0.91084 0.89416 0.87477 0.88337 0.89011 0.89009 0.88727 0.81523 0.83836 0.80331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 8.66 37.15 0.32 -1.53 16 2 C 0.14 2.16 3.01 -69.08 -0.21 1.95 16 3 H 0.12 1.71 6.14 -51.93 -0.32 1.39 16 4 C 0.50 10.32 6.91 -10.98 -0.08 10.24 16 5 O -0.52 -13.46 15.96 5.56 0.09 -13.37 16 6 N -0.59 -12.05 2.46 -175.05 -0.43 -12.48 16 7 C 0.25 6.44 5.16 -5.19 -0.03 6.41 16 8 C -0.53 -15.10 9.39 -34.44 -0.32 -15.43 16 9 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 10 C 0.06 1.81 5.46 -17.82 -0.10 1.72 16 11 N -0.89 -26.60 13.29 55.43 0.74 -25.87 16 12 Si 0.90 22.27 29.54 -169.99 -5.02 17.25 16 13 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 14 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 16 C 0.14 2.09 5.43 -4.04 -0.02 2.07 16 17 C -0.17 -2.19 4.63 -90.63 -0.42 -2.61 16 18 C -0.17 -2.06 10.18 -26.70 -0.27 -2.33 16 19 C -0.18 -1.78 10.25 -26.70 -0.27 -2.06 16 20 N -0.35 -5.96 3.19 -55.99 -0.18 -6.13 16 21 C 0.08 1.15 10.33 -17.22 -0.18 0.97 16 22 C -0.28 -4.00 10.80 -40.02 -0.43 -4.43 16 23 C 0.04 0.63 12.03 -17.36 -0.21 0.42 16 24 N -0.30 -5.35 12.58 30.63 0.39 -4.97 16 25 H 0.07 0.81 7.38 -51.93 -0.38 0.43 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.10 0.97 4.59 -51.93 -0.24 0.73 16 28 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 29 H 0.04 1.21 7.47 -51.93 -0.39 0.82 16 30 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 31 H 0.07 0.93 5.77 -51.93 -0.30 0.63 16 32 H 0.09 1.44 7.84 -51.92 -0.41 1.03 16 33 H 0.11 1.37 6.56 -51.92 -0.34 1.03 16 34 H 0.10 1.24 8.03 -51.93 -0.42 0.83 16 35 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.17 2.05 7.38 -52.49 -0.39 1.66 16 39 H 0.14 1.59 8.06 -52.49 -0.42 1.17 16 40 H 0.18 2.02 8.06 -52.49 -0.42 1.59 16 LS Contribution 334.59 15.07 5.04 5.04 Total: -1.00 -35.33 334.59 -7.27 -42.61 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -5.68 Total: 2.51 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -2.22 Total: -4.60 kcal Atomic # 7 Polarization: -49.96 SS G_CDS: 0.51 Total: -49.44 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: 0.09 Total: -13.37 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -35.33 -7.27 -42.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264071117.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.082 kcal (2) G-P(sol) polarization free energy of solvation -35.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds