Wall clock time and date at job start Mon Mar 30 2020 20:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08993 * 109.47560 * 2 1 4 4 C 1.50709 * 109.47094 * 239.99904 * 2 1 3 5 5 O 1.21281 * 120.00061 * 261.34834 * 4 2 1 6 6 N 1.34772 * 119.99708 * 81.35107 * 4 2 1 7 7 C 1.46503 * 120.00066 * 183.05380 * 6 4 2 8 8 C 1.50706 * 109.46574 * 269.99660 * 7 6 4 9 9 H 1.07990 * 120.00043 * 359.97438 * 8 7 6 10 10 C 1.37881 * 119.99368 * 179.97438 * 8 7 6 11 11 N 1.31507 * 120.00346 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 119.99689 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.46970 * 59.99874 * 12 10 8 14 14 H 1.48499 * 109.47054 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.47221 * 300.00195 * 12 10 8 16 16 C 1.46503 * 119.99978 * 3.04513 * 6 4 2 17 17 C 1.53000 * 109.47584 * 265.40799 * 16 6 4 18 18 C 1.52995 * 117.50316 * 242.54368 * 17 16 6 19 19 C 1.52994 * 117.50169 * 173.87928 * 17 16 6 20 20 N 1.46506 * 109.47679 * 120.00352 * 2 1 3 21 21 C 1.34950 * 126.03515 * 34.70814 * 20 2 1 22 22 C 1.35313 * 107.74464 * 179.84743 * 21 20 2 23 23 C 1.39865 * 107.92240 * 0.42304 * 22 21 20 24 24 N 1.30846 * 108.20276 * 359.73944 * 23 22 21 25 25 H 1.09002 * 109.46962 * 175.68248 * 1 2 3 26 26 H 1.09002 * 109.46666 * 295.67880 * 1 2 3 27 27 H 1.08998 * 109.47408 * 55.68080 * 1 2 3 28 28 H 1.08992 * 109.47626 * 149.99773 * 7 6 4 29 29 H 1.09001 * 109.46781 * 29.99207 * 7 6 4 30 30 H 0.97003 * 120.00014 * 179.97438 * 11 10 8 31 31 H 1.08999 * 109.47159 * 25.41372 * 16 6 4 32 32 H 1.09011 * 109.46847 * 145.41160 * 16 6 4 33 33 H 1.09008 * 115.54414 * 28.21250 * 17 16 6 34 34 H 1.09003 * 117.49740 * 359.97438 * 18 17 16 35 35 H 1.09000 * 117.50092 * 145.01642 * 18 17 16 36 36 H 1.09000 * 117.49885 * 214.98109 * 19 17 16 37 37 H 1.09001 * 117.50027 * 0.02562 * 19 17 16 38 38 H 1.08001 * 126.12327 * 0.02562 * 21 20 2 39 39 H 1.07997 * 126.03839 * 180.16789 * 22 21 20 40 40 H 1.08002 * 125.90105 * 179.71579 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.3834 -1.8693 -1.1608 6 7 2.0914 -0.0581 -2.4083 7 6 2.5161 -0.7671 -3.6180 8 6 4.0114 -0.6538 -3.7676 9 1 4.5875 -0.1080 -3.0353 10 6 4.6437 -1.2472 -4.8396 11 7 3.9420 -1.9114 -5.7317 12 14 6.4971 -1.1063 -5.0256 13 1 7.1605 -1.7067 -3.8404 14 1 6.9278 -1.8261 -6.2510 15 1 6.8764 0.3254 -5.1328 16 6 1.7308 1.3601 -2.4790 17 6 0.2617 1.4933 -2.8853 18 6 -0.0446 2.2023 -4.2060 19 6 -0.3495 2.8958 -2.8759 20 7 2.0184 -0.6907 1.1961 21 6 1.4373 -1.7526 1.7926 22 6 2.1967 -2.0928 2.8597 23 6 3.2735 -1.2026 2.9230 24 7 3.1677 -0.3615 1.9263 25 1 -0.3633 -1.0248 -0.0774 26 1 -0.3633 0.4453 0.9262 27 1 -0.3634 0.5794 -0.8487 28 1 2.0295 -0.3257 -4.4876 29 1 2.2373 -1.8179 -3.5399 30 1 4.3869 -2.3285 -6.4861 31 1 1.8814 1.8224 -1.5035 32 1 2.3587 1.8583 -3.2179 33 1 -0.3823 0.6616 -2.5993 34 1 0.8005 2.5743 -4.7853 35 1 -0.8904 1.8374 -4.7888 36 1 -1.3958 2.9869 -2.5842 37 1 0.2950 3.7238 -2.5807 38 1 0.5305 -2.2447 1.4735 39 1 2.0030 -2.9054 3.5441 40 1 4.0569 -1.2081 3.6665 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264071117.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:18:11 Heat of formation + Delta-G solvation = 55.643159 kcal Electronic energy + Delta-G solvation = -22022.441736 eV Core-core repulsion = 18839.529014 eV Total energy + Delta-G solvation = -3182.912722 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.26862 -40.80216 -38.44049 -36.23156 -35.58845 -34.55764 -31.10590 -30.64431 -29.63521 -27.79197 -26.16835 -24.53839 -23.14591 -22.22684 -21.93112 -21.70376 -19.91259 -18.72576 -18.43932 -18.30337 -17.11152 -16.44110 -16.31489 -16.00325 -15.41064 -15.26175 -15.03110 -14.54323 -14.36887 -14.34025 -13.76165 -13.65595 -13.41133 -13.34149 -13.22643 -13.01813 -12.69229 -12.61960 -12.50438 -12.28809 -12.25564 -11.78554 -11.63190 -11.23904 -11.02607 -10.76987 -10.68946 -10.30348 -9.57450 -9.47058 -8.28199 -6.42274 0.90430 1.30498 1.34869 1.39628 1.43649 1.67897 2.00362 2.21163 2.37417 2.93361 3.01697 3.34549 3.55371 3.71859 3.90094 3.97387 4.02506 4.14755 4.17665 4.37635 4.50378 4.57891 4.63561 4.72559 4.79475 4.87363 4.89385 4.97096 5.03680 5.10987 5.15643 5.17186 5.30486 5.36067 5.49446 5.73603 5.79079 6.00413 6.08747 6.57948 6.67093 6.79165 7.17530 7.32473 8.78736 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.012310 B = 0.006781 C = 0.004806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.986786 B = 4128.346207 C = 5824.707445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.149 3.851 3 H 0.132 0.868 4 C 0.487 3.513 5 O -0.584 6.584 6 N -0.588 5.588 7 C 0.269 3.731 8 C -0.547 4.547 9 H 0.045 0.955 10 C 0.013 3.987 11 N -0.924 5.924 12 Si 0.961 3.039 13 H -0.283 1.283 14 H -0.273 1.273 15 H -0.260 1.260 16 C 0.133 3.867 17 C -0.187 4.187 18 C -0.190 4.190 19 C -0.141 4.141 20 N -0.366 5.366 21 C 0.063 3.937 22 C -0.285 4.285 23 C 0.040 3.960 24 N -0.344 5.344 25 H 0.067 0.933 26 H 0.104 0.896 27 H 0.110 0.890 28 H 0.030 0.970 29 H -0.004 1.004 30 H 0.268 0.732 31 H 0.099 0.901 32 H 0.073 0.927 33 H 0.108 0.892 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.117 0.883 37 H 0.108 0.892 38 H 0.189 0.811 39 H 0.174 0.826 40 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.419 9.203 12.509 19.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.043 3.957 3 H 0.149 0.851 4 C 0.274 3.726 5 O -0.464 6.464 6 N -0.318 5.318 7 C 0.148 3.852 8 C -0.586 4.586 9 H 0.064 0.936 10 C -0.187 4.187 11 N -0.563 5.563 12 Si 0.785 3.215 13 H -0.209 1.209 14 H -0.198 1.198 15 H -0.184 1.184 16 C 0.010 3.990 17 C -0.206 4.206 18 C -0.227 4.227 19 C -0.178 4.178 20 N -0.148 5.148 21 C -0.083 4.083 22 C -0.314 4.314 23 C -0.146 4.146 24 N -0.165 5.165 25 H 0.086 0.914 26 H 0.122 0.878 27 H 0.128 0.872 28 H 0.048 0.952 29 H 0.014 0.986 30 H 0.077 0.923 31 H 0.117 0.883 32 H 0.091 0.909 33 H 0.126 0.874 34 H 0.104 0.896 35 H 0.115 0.885 36 H 0.136 0.864 37 H 0.127 0.873 38 H 0.206 0.794 39 H 0.191 0.809 40 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -10.749 9.590 11.626 18.511 hybrid contribution 0.974 -1.283 -0.342 1.646 sum -9.775 8.307 11.284 17.085 Atomic orbital electron populations 1.22288 0.87410 1.04783 1.06683 1.21310 0.98498 0.96743 0.79188 0.85094 1.21355 0.78542 0.87082 0.85629 1.90678 1.50449 1.19797 1.85505 1.48140 1.63755 1.11682 1.08239 1.18695 0.93687 0.91113 0.81742 1.21642 0.93776 1.34403 1.08736 0.93647 1.25768 1.03333 0.94350 0.95219 1.70018 1.37720 1.35123 1.13435 0.85571 0.79392 0.79086 0.77406 1.20924 1.19767 1.18404 1.21412 0.94283 0.80160 1.03099 1.22790 0.95931 0.98018 1.03902 1.23086 1.03546 1.04774 0.91278 1.23083 1.02617 0.93317 0.98825 1.48458 1.19370 1.25513 1.21461 1.22944 1.00696 0.90237 0.94393 1.21835 0.98820 1.06748 1.03973 1.24440 0.99797 0.93515 0.96810 1.77274 1.03579 1.26862 1.08794 0.91372 0.87778 0.87188 0.95184 0.98581 0.92271 0.88278 0.90894 0.87427 0.89631 0.88549 0.86439 0.87349 0.79394 0.80900 0.77314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.11 8.66 71.98 0.62 -2.49 16 2 C 0.15 4.52 3.01 44.24 0.13 4.66 16 3 H 0.13 3.57 6.14 -2.39 -0.01 3.55 16 4 C 0.49 20.80 6.91 87.66 0.61 21.41 16 5 O -0.58 -31.55 15.96 -3.03 -0.05 -31.59 16 6 N -0.59 -24.94 2.46 -826.12 -2.03 -26.97 16 7 C 0.27 14.60 5.16 85.63 0.44 15.04 16 8 C -0.55 -32.49 9.39 25.60 0.24 -32.25 16 9 H 0.05 2.73 7.81 -2.92 -0.02 2.71 16 10 C 0.01 0.76 5.46 84.66 0.46 1.22 16 11 N -0.92 -56.39 13.29 21.45 0.28 -56.10 16 12 Si 0.96 46.28 29.54 68.60 2.03 48.31 16 13 H -0.28 -13.91 7.11 99.48 0.71 -13.20 16 14 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 15 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 16 C 0.13 4.05 5.43 86.38 0.47 4.52 16 17 C -0.19 -4.46 4.63 -10.80 -0.05 -4.51 16 18 C -0.19 -4.34 10.18 30.62 0.31 -4.03 16 19 C -0.14 -2.29 10.25 30.62 0.31 -1.98 16 20 N -0.37 -12.19 3.19 -331.06 -1.06 -13.25 16 21 C 0.06 1.82 10.33 83.54 0.86 2.68 16 22 C -0.28 -7.49 10.80 21.99 0.24 -7.25 16 23 C 0.04 1.15 12.03 85.23 1.02 2.17 16 24 N -0.34 -12.23 12.58 -57.02 -0.72 -12.95 16 25 H 0.07 1.44 7.38 -2.39 -0.02 1.42 16 26 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.11 1.91 4.59 -2.39 -0.01 1.90 16 28 H 0.03 1.64 8.07 -2.39 -0.02 1.63 16 29 H 0.00 -0.25 7.47 -2.39 -0.02 -0.26 16 30 H 0.27 15.37 8.31 -92.71 -0.77 14.59 16 31 H 0.10 2.43 5.77 -2.39 -0.01 2.41 16 32 H 0.07 2.43 7.84 -2.38 -0.02 2.41 16 33 H 0.11 2.58 6.56 -2.38 -0.02 2.57 16 34 H 0.09 2.16 8.03 -2.39 -0.02 2.14 16 35 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.19 4.33 7.38 -2.91 -0.02 4.31 16 39 H 0.17 3.35 8.06 -2.91 -0.02 3.32 16 40 H 0.21 4.28 8.06 -2.91 -0.02 4.25 16 Total: -1.00 -81.12 334.59 5.17 -75.95 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: 1.03 Total: 17.41 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: 5.68 Total: -0.81 kcal Atomic # 7 Polarization: -105.75 SS G_CDS: -3.52 Total: -109.27 kcal Atomic # 8 Polarization: -31.55 SS G_CDS: -0.05 Total: -31.59 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Total: -81.12 5.17 -75.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264071117.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.592 kcal (2) G-P(sol) polarization free energy of solvation -81.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds