Wall clock time and date at job start Mon Mar 30 2020 20:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47274 * 2 1 4 4 C 1.50694 * 109.47484 * 119.99999 * 2 1 3 5 5 O 1.21286 * 119.99921 * 98.71067 * 4 2 1 6 6 N 1.34770 * 120.00188 * 278.71511 * 4 2 1 7 7 C 1.46496 * 120.00143 * 4.38403 * 6 4 2 8 8 C 1.50702 * 109.46854 * 264.61894 * 7 6 4 9 9 H 1.07997 * 120.00401 * 0.02562 * 8 7 6 10 10 C 1.37882 * 119.99905 * 179.97438 * 8 7 6 11 11 N 1.31521 * 119.99902 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 120.00033 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47070 * 90.00165 * 12 10 8 14 14 H 1.48499 * 109.47147 * 210.00348 * 12 10 8 15 15 H 1.48504 * 109.46836 * 330.00095 * 12 10 8 16 16 C 1.46504 * 120.00349 * 184.38258 * 6 4 2 17 17 C 1.53001 * 109.46824 * 266.15460 * 16 6 4 18 18 C 1.53002 * 117.51812 * 116.28537 * 17 16 6 19 19 C 1.53001 * 60.00204 * 107.47605 * 18 17 16 20 20 N 1.46499 * 109.47081 * 240.00380 * 2 1 3 21 21 C 1.34948 * 126.03361 * 324.71416 * 20 2 1 22 22 C 1.35320 * 107.74569 * 179.84089 * 21 20 2 23 23 C 1.39876 * 107.91927 * 0.42287 * 22 21 20 24 24 N 1.30844 * 108.19849 * 359.73915 * 23 22 21 25 25 H 1.09001 * 109.46983 * 173.46981 * 1 2 3 26 26 H 1.09000 * 109.47108 * 293.47074 * 1 2 3 27 27 H 1.08999 * 109.46874 * 53.46326 * 1 2 3 28 28 H 1.09000 * 109.47476 * 24.61412 * 7 6 4 29 29 H 1.09000 * 109.47802 * 144.61795 * 7 6 4 30 30 H 0.97001 * 119.99448 * 179.97438 * 11 10 8 31 31 H 1.08996 * 109.47644 * 146.15361 * 16 6 4 32 32 H 1.09001 * 109.46922 * 26.15000 * 16 6 4 33 33 H 1.08996 * 115.55434 * 330.57643 * 17 16 6 34 34 H 1.09004 * 117.49487 * 214.96657 * 18 17 16 35 35 H 1.08996 * 117.50106 * 359.97438 * 18 17 16 36 36 H 1.08995 * 117.50142 * 252.50717 * 19 18 17 37 37 H 1.09003 * 117.50053 * 107.49049 * 19 18 17 38 38 H 1.07996 * 126.13018 * 359.97438 * 21 20 2 39 39 H 1.08003 * 126.04553 * 180.15758 * 22 21 20 40 40 H 1.08000 * 125.89936 * 179.71480 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.3845 -1.8689 1.1605 6 7 2.0903 -0.0584 2.4085 7 6 1.5759 1.3091 2.5150 8 6 2.7086 2.2871 2.3374 9 1 3.7113 1.9262 2.1622 10 6 2.4646 3.6429 2.3974 11 7 1.2435 4.0825 2.6102 12 14 3.8685 4.8552 2.1765 13 1 4.0068 5.1956 0.7377 14 1 3.5836 6.0892 2.9520 15 1 5.1312 4.2445 2.6644 16 6 2.6678 -0.7172 3.5827 17 6 1.5538 -1.3828 4.3933 18 6 1.5874 -2.9070 4.5224 19 6 1.9392 -2.0294 5.7254 20 7 2.0183 -0.6905 -1.1962 21 6 1.4431 -1.7591 -1.7864 22 6 2.1962 -2.0923 -2.8601 23 6 3.2738 -1.2027 -2.9228 24 7 3.1681 -0.3620 -1.9258 25 1 -0.3633 -1.0210 -0.1169 26 1 -0.3633 0.4093 0.9426 27 1 -0.3633 0.6118 -0.8257 28 1 0.8265 1.4767 1.7414 29 1 1.1232 1.4517 3.4962 30 1 1.0720 5.0362 2.6528 31 1 3.1752 0.0226 4.2017 32 1 3.3835 -1.4733 3.2599 33 1 0.5764 -0.9044 4.3303 34 1 0.6320 -3.4313 4.5443 35 1 2.4030 -3.4359 4.0295 36 1 2.9864 -1.9811 6.0240 37 1 1.2154 -1.9765 6.5387 38 1 0.5418 -2.2576 -1.4614 39 1 2.0022 -2.9046 -3.5451 40 1 4.0578 -1.2090 -3.6656 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264071120.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:18:14 Heat of formation + Delta-G solvation = 71.180758 kcal Electronic energy + Delta-G solvation = -22075.222492 eV Core-core repulsion = 18892.983530 eV Total energy + Delta-G solvation = -3182.238961 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.93377 -39.27539 -37.03567 -34.91259 -34.01037 -32.56454 -29.78055 -29.28833 -27.83278 -26.53349 -24.21568 -22.93905 -22.12323 -21.14593 -20.65879 -20.04230 -18.59718 -16.90757 -16.82162 -16.47573 -15.67853 -14.91410 -14.58073 -14.49499 -14.12968 -13.99214 -13.67542 -13.23214 -12.99764 -12.67878 -12.38845 -12.15578 -12.12399 -12.02022 -11.44630 -11.33311 -11.27433 -11.24996 -10.93144 -10.79315 -10.33543 -10.28754 -10.16043 -9.79128 -9.63383 -9.49978 -8.94316 -8.62912 -8.18054 -7.87013 -6.26241 -4.34003 2.24709 2.73290 3.18464 3.20847 3.21373 3.28428 3.32826 3.76862 4.11409 4.29247 4.84553 5.03029 5.04332 5.08317 5.13167 5.20651 5.27636 5.31395 5.35884 5.70868 5.75033 5.81286 5.84790 5.93604 6.01789 6.08909 6.09579 6.19887 6.21479 6.31974 6.32295 6.51553 6.67443 6.96782 7.03011 7.31370 7.42477 7.68391 7.93905 8.09684 8.17401 8.66777 8.83049 9.35097 10.80333 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.010484 B = 0.007908 C = 0.005103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2670.018715 B = 3539.735530 C = 5486.097317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.140 3.860 3 H 0.141 0.859 4 C 0.509 3.491 5 O -0.556 6.556 6 N -0.585 5.585 7 C 0.228 3.772 8 C -0.543 4.543 9 H 0.062 0.938 10 C 0.068 3.932 11 N -0.890 5.890 12 Si 0.897 3.103 13 H -0.277 1.277 14 H -0.284 1.284 15 H -0.272 1.272 16 C 0.151 3.849 17 C -0.159 4.159 18 C -0.175 4.175 19 C -0.179 4.179 20 N -0.344 5.344 21 C 0.073 3.927 22 C -0.287 4.287 23 C 0.036 3.964 24 N -0.290 5.290 25 H 0.065 0.935 26 H 0.095 0.905 27 H 0.075 0.925 28 H 0.043 0.957 29 H 0.040 0.960 30 H 0.266 0.734 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.104 0.896 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.166 0.834 39 H 0.142 0.858 40 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.863 -9.381 -2.541 10.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.034 3.966 3 H 0.159 0.841 4 C 0.294 3.706 5 O -0.436 6.436 6 N -0.315 5.315 7 C 0.109 3.891 8 C -0.582 4.582 9 H 0.081 0.919 10 C -0.136 4.136 11 N -0.528 5.528 12 Si 0.724 3.276 13 H -0.203 1.203 14 H -0.210 1.210 15 H -0.197 1.197 16 C 0.028 3.972 17 C -0.178 4.178 18 C -0.212 4.212 19 C -0.217 4.217 20 N -0.126 5.126 21 C -0.074 4.074 22 C -0.317 4.317 23 C -0.150 4.150 24 N -0.111 5.111 25 H 0.084 0.916 26 H 0.113 0.887 27 H 0.094 0.906 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.076 0.924 31 H 0.103 0.897 32 H 0.092 0.908 33 H 0.122 0.878 34 H 0.105 0.895 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.109 0.891 38 H 0.183 0.817 39 H 0.160 0.840 40 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -2.321 -8.695 -1.816 9.181 hybrid contribution 0.315 0.134 -0.399 0.526 sum -2.006 -8.561 -2.215 9.068 Atomic orbital electron populations 1.22139 0.91066 1.03117 1.05111 1.21247 0.95918 0.98786 0.80609 0.84128 1.20431 0.78817 0.86544 0.84804 1.90636 1.50409 1.16934 1.85599 1.48117 1.58925 1.16817 1.07664 1.19642 0.95115 0.75396 0.98986 1.21483 0.95020 0.90832 1.50831 0.91933 1.24924 0.95899 0.98297 0.94438 1.69910 1.19457 1.15003 1.48424 0.86505 0.82304 0.80337 0.78474 1.20305 1.21013 1.19722 1.20873 0.93497 0.96651 0.86210 1.22755 1.01330 0.94970 0.98782 1.22957 1.02746 0.93582 1.01962 1.22905 1.02061 1.05126 0.91610 1.48386 1.19122 1.23681 1.21362 1.22359 0.99811 0.90691 0.94516 1.21357 0.99962 1.06727 1.03650 1.23795 0.99240 0.94526 0.97440 1.77431 1.02259 1.24175 1.07197 0.91644 0.88691 0.90558 0.93877 0.94183 0.92404 0.89726 0.90829 0.87775 0.89503 0.88834 0.88920 0.89091 0.81661 0.84039 0.80493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.33 8.60 37.16 0.32 -2.01 16 2 C 0.14 2.63 2.87 -69.09 -0.20 2.43 16 3 H 0.14 2.97 6.98 -51.93 -0.36 2.60 16 4 C 0.51 10.51 6.91 -10.99 -0.08 10.43 16 5 O -0.56 -12.55 15.89 5.55 0.09 -12.46 16 6 N -0.59 -11.95 2.46 -175.06 -0.43 -12.38 16 7 C 0.23 5.11 4.72 -5.19 -0.02 5.09 16 8 C -0.54 -13.79 9.06 -34.44 -0.31 -14.11 16 9 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 10 C 0.07 1.76 5.46 -17.81 -0.10 1.66 16 11 N -0.89 -23.69 13.29 55.43 0.74 -22.96 16 12 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 16 13 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 14 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 15 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 16 C 0.15 2.79 5.72 -4.04 -0.02 2.76 16 17 C -0.16 -2.53 6.01 -90.61 -0.54 -3.07 16 18 C -0.18 -2.49 10.18 -26.73 -0.27 -2.76 16 19 C -0.18 -2.36 10.25 -26.73 -0.27 -2.63 16 20 N -0.34 -6.44 3.20 -56.00 -0.18 -6.62 16 21 C 0.07 1.17 10.28 -17.22 -0.18 0.99 16 22 C -0.29 -4.22 10.80 -40.01 -0.43 -4.66 16 23 C 0.04 0.58 12.03 -17.36 -0.21 0.37 16 24 N -0.29 -5.71 12.58 30.63 0.39 -5.32 16 25 H 0.06 0.86 6.83 -51.93 -0.35 0.51 16 26 H 0.09 1.44 6.38 -51.93 -0.33 1.11 16 27 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.04 0.96 4.66 -51.93 -0.24 0.72 16 29 H 0.04 0.94 8.11 -51.93 -0.42 0.52 16 30 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 31 H 0.08 1.57 8.10 -51.93 -0.42 1.15 16 32 H 0.07 1.40 7.11 -51.93 -0.37 1.03 16 33 H 0.10 1.71 8.14 -51.93 -0.42 1.28 16 34 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.09 1.39 8.03 -51.93 -0.42 0.97 16 36 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.17 2.15 7.11 -52.49 -0.37 1.78 16 39 H 0.14 1.63 8.06 -52.48 -0.42 1.21 16 40 H 0.18 2.14 8.06 -52.49 -0.42 1.72 16 LS Contribution 337.42 15.07 5.08 5.08 Total: -1.00 -30.09 337.42 -7.45 -37.55 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -5.80 Total: 7.13 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: -2.32 Total: -5.50 kcal Atomic # 7 Polarization: -47.79 SS G_CDS: 0.51 Total: -47.28 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: 0.09 Total: -12.46 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.09 -7.45 -37.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264071120.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.727 kcal (2) G-P(sol) polarization free energy of solvation -30.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds