Wall clock time and date at job start Mon Mar 30 2020 20:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.47723 * 2 1 4 4 C 1.50700 * 109.47245 * 240.00313 * 2 1 3 5 5 H 1.08000 * 120.00006 * 274.41448 * 4 2 1 6 6 C 1.37885 * 120.00379 * 94.40684 * 4 2 1 7 7 N 1.31510 * 119.99951 * 175.72432 * 6 4 2 8 8 Si 1.86793 * 119.99695 * 355.72157 * 6 4 2 9 9 H 1.48506 * 109.47233 * 84.30672 * 8 6 4 10 10 H 1.48497 * 109.47508 * 204.30787 * 8 6 4 11 11 H 1.48507 * 109.47272 * 324.30619 * 8 6 4 12 12 N 1.46495 * 109.47392 * 120.00276 * 2 1 3 13 13 C 1.46505 * 119.99885 * 53.86689 * 12 2 1 14 14 C 1.34778 * 120.00384 * 233.87164 * 12 2 1 15 15 O 1.21277 * 119.99917 * 175.54337 * 14 12 2 16 16 C 1.50695 * 119.99714 * 355.81622 * 14 12 2 17 17 H 1.09005 * 109.46643 * 319.19051 * 16 14 12 18 18 C 1.53104 * 109.46540 * 199.21098 * 16 14 12 19 19 C 1.53365 * 109.51853 * 169.72452 * 18 16 14 20 20 C 1.50840 * 108.38266 * 49.93740 * 19 18 16 21 21 C 1.39295 * 127.90231 * 163.43283 * 20 19 18 22 22 N 1.31066 * 108.07884 * 180.02562 * 21 20 19 23 23 N 1.40296 * 108.27242 * 359.97438 * 22 21 20 24 24 H 0.96994 * 126.08818 * 179.97438 * 23 22 21 25 25 C 1.34327 * 107.81667 * 359.94324 * 23 22 21 26 26 C 1.50818 * 128.03876 * 180.13563 * 25 23 22 27 27 H 1.08999 * 109.47312 * 299.18621 * 1 2 3 28 28 H 1.09007 * 109.47350 * 59.17782 * 1 2 3 29 29 H 1.08994 * 109.47860 * 179.17894 * 1 2 3 30 30 H 0.96999 * 119.99743 * 180.02562 * 7 6 4 31 31 H 1.09000 * 109.47021 * 269.00319 * 13 12 2 32 32 H 1.09004 * 109.47145 * 28.99990 * 13 12 2 33 33 H 1.08999 * 109.46884 * 149.00024 * 13 12 2 34 34 H 1.09000 * 109.46379 * 289.73280 * 18 16 14 35 35 H 1.08993 * 109.46673 * 49.71457 * 18 16 14 36 36 H 1.08997 * 109.68597 * 169.66512 * 19 18 16 37 37 H 1.09005 * 109.67539 * 290.17971 * 19 18 16 38 38 H 1.08003 * 125.95598 * 0.02562 * 21 20 19 39 39 H 1.09001 * 109.67455 * 43.62837 * 26 25 23 40 40 H 1.08998 * 109.68838 * 283.07841 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.1444 -1.7845 -1.2260 6 6 2.3486 0.0110 -2.3622 7 7 2.8660 -0.5978 -3.4068 8 14 2.0422 1.8530 -2.4116 9 1 3.1908 2.5627 -1.7932 10 1 1.8904 2.2920 -3.8221 11 1 0.8017 2.1688 -1.6588 12 7 2.0183 -0.6906 1.1961 13 6 1.5571 -2.0481 1.4977 14 6 2.8918 -0.0773 2.0191 15 8 3.2339 -0.6158 3.0504 16 6 3.4386 1.2805 1.6606 17 1 3.6619 1.3122 0.5942 18 6 4.7194 1.5414 2.4579 19 6 5.4142 2.7962 1.9149 20 6 4.3948 3.9044 1.8276 21 6 4.6263 5.2719 1.6979 22 7 3.4654 5.8791 1.6595 23 7 2.4577 4.9086 1.7638 24 1 1.5021 5.0749 1.7632 25 6 3.0520 3.7081 1.8639 26 6 2.3980 2.3554 1.9947 27 1 -0.3634 0.5011 0.8972 28 1 -0.3634 0.5266 -0.8826 29 1 -0.3634 -1.0275 -0.0147 30 1 3.0889 -0.0902 -4.2028 31 1 0.6705 -1.9985 2.1298 32 1 1.3128 -2.5636 0.5689 33 1 2.3450 -2.5920 2.0188 34 1 4.4693 1.6906 3.5083 35 1 5.3877 0.6859 2.3617 36 1 6.2195 3.0903 2.5880 37 1 5.8203 2.5912 0.9243 38 1 5.5937 5.7485 1.6391 39 1 1.5599 2.2844 1.3014 40 1 2.0430 2.2163 3.0159 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266337422.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:18:24 Heat of formation + Delta-G solvation = 27.688274 kcal Electronic energy + Delta-G solvation = -22701.781566 eV Core-core repulsion = 19517.656630 eV Total energy + Delta-G solvation = -3184.124937 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.48851 -39.51551 -36.05225 -35.63843 -32.61054 -32.51761 -30.14321 -29.91646 -29.07647 -26.58256 -25.36725 -23.75168 -22.44775 -21.53754 -21.19738 -18.93320 -18.05452 -17.42102 -17.19477 -16.37597 -15.29593 -15.05163 -14.84035 -14.34387 -14.15658 -13.72269 -13.58736 -13.31828 -13.05464 -12.80666 -12.62795 -12.42590 -12.19343 -11.87180 -11.70853 -11.48012 -11.37012 -11.17730 -10.84889 -10.64142 -10.56545 -10.45031 -10.41799 -10.07823 -9.53890 -9.45250 -9.11147 -8.79279 -8.20682 -7.76384 -6.31913 -4.34385 1.91324 2.81438 2.85285 3.08568 3.13897 3.20876 3.25922 3.78334 4.16690 4.59988 4.82654 4.89837 4.94733 5.07969 5.27577 5.31688 5.46913 5.58441 5.62307 5.75363 5.81416 5.97300 5.99540 6.03590 6.07671 6.14220 6.23474 6.34060 6.37549 6.40165 6.42731 6.53186 6.64001 6.73769 6.83548 7.29519 7.30988 7.46847 7.69906 8.00065 8.39723 8.72975 8.84259 9.28123 10.80645 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014887 B = 0.008211 C = 0.006445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.376470 B = 3409.101200 C = 4343.454890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.220 3.780 3 H 0.052 0.948 4 C -0.530 4.530 5 H 0.081 0.919 6 C 0.082 3.918 7 N -0.885 5.885 8 Si 0.858 3.142 9 H -0.267 1.267 10 H -0.283 1.283 11 H -0.262 1.262 12 N -0.586 5.586 13 C 0.094 3.906 14 C 0.517 3.483 15 O -0.566 6.566 16 C -0.102 4.102 17 H 0.105 0.895 18 C -0.095 4.095 19 C -0.042 4.042 20 C -0.236 4.236 21 C 0.057 3.943 22 N -0.303 5.303 23 N -0.471 5.471 24 H 0.436 0.564 25 C 0.096 3.904 26 C -0.051 4.051 27 H 0.027 0.973 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.268 0.732 31 H 0.040 0.960 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.182 0.818 39 H 0.088 0.912 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.254 7.522 9.072 11.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.119 3.881 3 H 0.070 0.930 4 C -0.568 4.568 5 H 0.099 0.901 6 C -0.123 4.123 7 N -0.521 5.521 8 Si 0.684 3.316 9 H -0.193 1.193 10 H -0.209 1.209 11 H -0.187 1.187 12 N -0.316 5.316 13 C -0.050 4.050 14 C 0.305 3.695 15 O -0.447 6.447 16 C -0.124 4.124 17 H 0.123 0.877 18 C -0.133 4.133 19 C -0.081 4.081 20 C -0.247 4.247 21 C -0.128 4.128 22 N -0.125 5.125 23 N -0.178 5.178 24 H 0.280 0.720 25 C -0.034 4.034 26 C -0.091 4.091 27 H 0.046 0.954 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.059 0.941 32 H 0.094 0.906 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.199 0.801 39 H 0.106 0.894 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.604 8.387 9.279 12.522 hybrid contribution -0.353 0.340 -0.471 0.680 sum -0.957 8.727 8.808 12.436 Atomic orbital electron populations 1.22311 0.98084 1.01416 0.99440 1.19409 0.91303 0.93451 0.83978 0.93011 1.21150 1.44731 0.96218 0.94740 0.90093 1.24930 0.93793 0.97930 0.95623 1.69868 1.41030 1.36508 1.04720 0.87187 0.79808 0.86377 0.78216 1.19273 1.20884 1.18711 1.48272 1.42959 1.15561 1.24821 1.21427 0.98687 0.83895 1.00952 1.20283 0.78911 0.87093 0.83236 1.90601 1.61096 1.67546 1.25462 1.21291 0.95880 0.91730 1.03494 0.87660 1.21386 0.94965 0.97544 0.99434 1.20047 0.95269 0.91329 1.01409 1.19986 0.93409 0.94992 1.16344 1.23569 0.97029 0.92741 0.99475 1.77429 0.95856 1.13509 1.25723 1.45990 1.09013 1.03820 1.59023 0.72009 1.20863 0.93668 0.88358 1.00508 1.20353 0.97830 0.87455 1.03419 0.95409 0.92264 0.92686 0.92187 0.94099 0.90611 0.91915 0.91114 0.90628 0.90789 0.90953 0.80072 0.89369 0.89102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 8.93 37.15 0.33 -2.52 16 2 C 0.22 4.58 1.65 -69.09 -0.11 4.46 16 3 H 0.05 1.06 1.88 -51.93 -0.10 0.97 16 4 C -0.53 -13.35 8.76 -34.44 -0.30 -13.66 16 5 H 0.08 2.25 7.24 -52.49 -0.38 1.87 16 6 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 7 N -0.88 -25.11 13.96 55.43 0.77 -24.33 16 8 Si 0.86 19.42 26.40 -169.99 -4.49 14.93 16 9 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.26 -5.48 6.28 56.52 0.36 -5.13 16 12 N -0.59 -11.62 2.75 -175.27 -0.48 -12.10 16 13 C 0.09 1.68 9.24 59.85 0.55 2.23 16 14 C 0.52 10.07 6.81 -10.99 -0.07 10.00 16 15 O -0.57 -12.03 15.80 5.56 0.09 -11.94 16 16 C -0.10 -1.74 1.62 -91.57 -0.15 -1.89 16 17 H 0.11 2.01 6.99 -51.93 -0.36 1.64 16 18 C -0.10 -1.43 4.56 -26.49 -0.12 -1.55 16 19 C -0.04 -0.56 6.28 -27.63 -0.17 -0.74 16 20 C -0.24 -3.45 5.91 -105.05 -0.62 -4.07 16 21 C 0.06 0.78 12.00 -17.49 -0.21 0.57 16 22 N -0.30 -4.52 12.71 30.54 0.39 -4.13 16 23 N -0.47 -6.50 7.34 33.48 0.25 -6.25 16 24 H 0.44 4.69 8.96 -182.45 -1.64 3.06 16 25 C 0.10 1.42 7.08 -82.33 -0.58 0.84 16 26 C -0.05 -0.76 5.29 -27.67 -0.15 -0.91 16 27 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 1.12 6.94 -51.92 -0.36 0.76 16 29 H 0.05 0.99 7.51 -51.93 -0.39 0.60 16 30 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 31 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 1.37 6.94 -51.93 -0.36 1.01 16 33 H 0.06 1.13 7.52 -51.93 -0.39 0.74 16 34 H 0.07 1.05 8.11 -51.93 -0.42 0.63 16 35 H 0.08 1.16 8.07 -51.93 -0.42 0.74 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.18 1.85 8.06 -52.48 -0.42 1.43 16 39 H 0.09 1.31 6.47 -51.93 -0.34 0.98 16 40 H 0.09 1.24 8.12 -51.93 -0.42 0.82 16 LS Contribution 316.73 15.07 4.77 4.77 Total: -1.00 -30.58 316.73 -7.28 -37.86 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -6.87 Total: 6.38 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: -1.71 Total: -5.19 kcal Atomic # 7 Polarization: -47.74 SS G_CDS: 0.93 Total: -46.81 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: 0.09 Total: -11.94 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -4.49 Total: 14.93 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.58 -7.28 -37.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266337422.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.549 kcal (2) G-P(sol) polarization free energy of solvation -30.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds