Wall clock time and date at job start Mon Mar 30 2020 20:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.47723 * 2 1 4 4 C 1.50700 * 109.47245 * 240.00313 * 2 1 3 5 5 H 1.08000 * 120.00006 * 274.41448 * 4 2 1 6 6 C 1.37885 * 120.00379 * 94.40684 * 4 2 1 7 7 N 1.31510 * 119.99951 * 175.72432 * 6 4 2 8 8 Si 1.86793 * 119.99695 * 355.72157 * 6 4 2 9 9 H 1.48506 * 109.47233 * 84.30672 * 8 6 4 10 10 H 1.48497 * 109.47508 * 204.30787 * 8 6 4 11 11 H 1.48507 * 109.47272 * 324.30619 * 8 6 4 12 12 N 1.46495 * 109.47392 * 120.00276 * 2 1 3 13 13 C 1.46505 * 119.99885 * 53.86689 * 12 2 1 14 14 C 1.34778 * 120.00384 * 233.87164 * 12 2 1 15 15 O 1.21277 * 119.99917 * 175.54337 * 14 12 2 16 16 C 1.50695 * 119.99714 * 355.81622 * 14 12 2 17 17 H 1.09005 * 109.46643 * 319.19051 * 16 14 12 18 18 C 1.53104 * 109.46540 * 199.21098 * 16 14 12 19 19 C 1.53365 * 109.51853 * 169.72452 * 18 16 14 20 20 C 1.50840 * 108.38266 * 49.93740 * 19 18 16 21 21 C 1.39295 * 127.90231 * 163.43283 * 20 19 18 22 22 N 1.31066 * 108.07884 * 180.02562 * 21 20 19 23 23 N 1.40296 * 108.27242 * 359.97438 * 22 21 20 24 24 H 0.96994 * 126.08818 * 179.97438 * 23 22 21 25 25 C 1.34327 * 107.81667 * 359.94324 * 23 22 21 26 26 C 1.50818 * 128.03876 * 180.13563 * 25 23 22 27 27 H 1.08999 * 109.47312 * 299.18621 * 1 2 3 28 28 H 1.09007 * 109.47350 * 59.17782 * 1 2 3 29 29 H 1.08994 * 109.47860 * 179.17894 * 1 2 3 30 30 H 0.96999 * 119.99743 * 180.02562 * 7 6 4 31 31 H 1.09000 * 109.47021 * 269.00319 * 13 12 2 32 32 H 1.09004 * 109.47145 * 28.99990 * 13 12 2 33 33 H 1.08999 * 109.46884 * 149.00024 * 13 12 2 34 34 H 1.09000 * 109.46379 * 289.73280 * 18 16 14 35 35 H 1.08993 * 109.46673 * 49.71457 * 18 16 14 36 36 H 1.08997 * 109.68597 * 169.66512 * 19 18 16 37 37 H 1.09005 * 109.67539 * 290.17971 * 19 18 16 38 38 H 1.08003 * 125.95598 * 0.02562 * 21 20 19 39 39 H 1.09001 * 109.67455 * 43.62837 * 26 25 23 40 40 H 1.08998 * 109.68838 * 283.07841 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.1444 -1.7845 -1.2260 6 6 2.3486 0.0110 -2.3622 7 7 2.8660 -0.5978 -3.4068 8 14 2.0422 1.8530 -2.4116 9 1 3.1908 2.5627 -1.7932 10 1 1.8904 2.2920 -3.8221 11 1 0.8017 2.1688 -1.6588 12 7 2.0183 -0.6906 1.1961 13 6 1.5571 -2.0481 1.4977 14 6 2.8918 -0.0773 2.0191 15 8 3.2339 -0.6158 3.0504 16 6 3.4386 1.2805 1.6606 17 1 3.6619 1.3122 0.5942 18 6 4.7194 1.5414 2.4579 19 6 5.4142 2.7962 1.9149 20 6 4.3948 3.9044 1.8276 21 6 4.6263 5.2719 1.6979 22 7 3.4654 5.8791 1.6595 23 7 2.4577 4.9086 1.7638 24 1 1.5021 5.0749 1.7632 25 6 3.0520 3.7081 1.8639 26 6 2.3980 2.3554 1.9947 27 1 -0.3634 0.5011 0.8972 28 1 -0.3634 0.5266 -0.8826 29 1 -0.3634 -1.0275 -0.0147 30 1 3.0889 -0.0902 -4.2028 31 1 0.6705 -1.9985 2.1298 32 1 1.3128 -2.5636 0.5689 33 1 2.3450 -2.5920 2.0188 34 1 4.4693 1.6906 3.5083 35 1 5.3877 0.6859 2.3617 36 1 6.2195 3.0903 2.5880 37 1 5.8203 2.5912 0.9243 38 1 5.5937 5.7485 1.6391 39 1 1.5599 2.2844 1.3014 40 1 2.0430 2.2163 3.0159 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266337422.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:18:23 Heat of formation + Delta-G solvation = 7.956802 kcal Electronic energy + Delta-G solvation = -22702.637187 eV Core-core repulsion = 19517.656630 eV Total energy + Delta-G solvation = -3184.980558 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.57823 -41.00656 -37.52250 -37.06750 -34.53738 -33.60807 -31.78818 -31.13926 -30.18552 -28.01125 -27.21097 -24.95599 -23.69473 -22.90881 -22.48760 -20.18321 -19.47118 -19.18049 -18.48332 -17.88656 -16.88631 -16.39254 -16.30979 -15.78964 -15.26506 -15.04082 -14.89697 -14.80197 -14.46641 -14.23355 -14.05209 -13.79398 -13.56481 -13.34393 -13.15821 -12.95143 -12.80939 -12.61686 -12.52124 -12.14804 -11.86612 -11.84361 -11.72680 -11.53387 -11.33951 -10.84951 -10.62025 -10.50054 -9.39064 -9.28078 -8.34416 -6.40525 0.84161 1.30173 1.32472 1.39743 1.60681 1.80746 1.93258 2.26219 2.29525 3.04252 3.41368 3.65443 3.72554 3.87511 4.00829 4.13172 4.24554 4.34638 4.45926 4.49066 4.58329 4.61007 4.63677 4.75625 4.79158 4.81259 4.88897 4.95347 5.01695 5.08358 5.20381 5.33016 5.33860 5.37308 5.52893 5.71497 5.82496 6.09753 6.34487 6.64053 6.67401 6.71582 7.22847 7.31364 8.81823 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014887 B = 0.008211 C = 0.006445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.376470 B = 3409.101200 C = 4343.454890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.225 3.775 3 H 0.061 0.939 4 C -0.527 4.527 5 H 0.040 0.960 6 C 0.029 3.971 7 N -0.938 5.938 8 Si 0.912 3.088 9 H -0.264 1.264 10 H -0.290 1.290 11 H -0.228 1.228 12 N -0.593 5.593 13 C 0.093 3.907 14 C 0.515 3.485 15 O -0.585 6.585 16 C -0.100 4.100 17 H 0.084 0.916 18 C -0.091 4.091 19 C -0.036 4.036 20 C -0.251 4.251 21 C 0.057 3.943 22 N -0.322 5.322 23 N -0.467 5.467 24 H 0.447 0.553 25 C 0.086 3.914 26 C -0.044 4.044 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.267 0.733 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.100 0.900 37 H 0.067 0.933 38 H 0.212 0.788 39 H 0.091 0.909 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.947 9.682 10.551 14.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.123 3.877 3 H 0.079 0.921 4 C -0.566 4.566 5 H 0.059 0.941 6 C -0.171 4.171 7 N -0.577 5.577 8 Si 0.736 3.264 9 H -0.189 1.189 10 H -0.217 1.217 11 H -0.151 1.151 12 N -0.323 5.323 13 C -0.050 4.050 14 C 0.303 3.697 15 O -0.467 6.467 16 C -0.122 4.122 17 H 0.102 0.898 18 C -0.129 4.129 19 C -0.074 4.074 20 C -0.262 4.262 21 C -0.128 4.128 22 N -0.145 5.145 23 N -0.176 5.176 24 H 0.293 0.707 25 C -0.045 4.045 26 C -0.084 4.084 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.118 0.882 37 H 0.086 0.914 38 H 0.229 0.771 39 H 0.109 0.891 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.333 10.546 10.786 15.144 hybrid contribution -0.099 -0.466 -0.891 1.011 sum -1.431 10.080 9.895 14.197 Atomic orbital electron populations 1.22217 0.95749 1.02054 1.00922 1.19318 0.92913 0.93202 0.82285 0.92120 1.21382 1.43875 0.94677 0.96623 0.94127 1.25696 0.93696 1.02523 0.95186 1.70020 1.43472 1.38478 1.05698 0.86295 0.81187 0.80785 0.78181 1.18939 1.21672 1.15097 1.48291 1.43314 1.16193 1.24515 1.21487 0.99518 0.83106 1.00898 1.20708 0.78267 0.87870 0.82827 1.90588 1.61530 1.68273 1.26329 1.21275 0.97472 0.91103 1.02369 0.89822 1.21368 0.94010 0.98163 0.99406 1.20032 0.95586 0.90126 1.01704 1.20247 0.93629 0.95726 1.16628 1.24071 0.97940 0.92413 0.98334 1.77405 0.96497 1.14189 1.26420 1.46017 1.09639 1.03261 1.58664 0.70674 1.20876 0.94029 0.88510 1.01052 1.20270 0.97001 0.86786 1.04294 0.92259 0.92378 0.92612 0.92353 0.91535 0.91508 0.92407 0.90722 0.91590 0.88150 0.91426 0.77142 0.89101 0.87707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.18 8.93 71.98 0.64 -4.54 16 2 C 0.22 9.04 1.65 44.24 0.07 9.11 16 3 H 0.06 2.36 1.88 -2.39 0.00 2.35 16 4 C -0.53 -26.88 8.76 25.60 0.22 -26.66 16 5 H 0.04 2.35 7.24 -2.91 -0.02 2.33 16 6 C 0.03 1.51 5.47 84.66 0.46 1.98 16 7 N -0.94 -54.82 13.96 21.45 0.30 -54.52 16 8 Si 0.91 39.28 26.40 68.60 1.81 41.09 16 9 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 10 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 11 H -0.23 -8.50 6.28 99.48 0.62 -7.87 16 12 N -0.59 -22.90 2.75 -826.81 -2.28 -25.18 16 13 C 0.09 3.26 9.24 127.77 1.18 4.44 16 14 C 0.51 19.45 6.81 87.66 0.60 20.05 16 15 O -0.59 -24.26 15.80 -3.02 -0.05 -24.30 16 16 C -0.10 -3.27 1.62 -11.41 -0.02 -3.29 16 17 H 0.08 3.11 6.99 -2.38 -0.02 3.09 16 18 C -0.09 -2.61 4.56 30.75 0.14 -2.47 16 19 C -0.04 -0.89 6.28 30.01 0.19 -0.70 16 20 C -0.25 -6.65 5.91 -20.14 -0.12 -6.77 16 21 C 0.06 1.39 12.00 85.06 1.02 2.41 16 22 N -0.32 -8.73 12.71 -57.28 -0.73 -9.46 16 23 N -0.47 -11.55 7.34 -47.99 -0.35 -11.91 16 24 H 0.45 8.33 8.96 -213.20 -1.91 6.42 16 25 C 0.09 2.31 7.08 41.64 0.29 2.60 16 26 C -0.04 -1.20 5.29 29.98 0.16 -1.04 16 27 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.06 2.01 6.94 -2.38 -0.02 1.99 16 29 H 0.05 1.89 7.51 -2.39 -0.02 1.87 16 30 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 31 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.07 2.44 6.94 -2.39 -0.02 2.43 16 33 H 0.06 2.07 7.52 -2.39 -0.02 2.05 16 34 H 0.07 2.07 8.11 -2.39 -0.02 2.05 16 35 H 0.07 1.98 8.07 -2.39 -0.02 1.96 16 36 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 38 H 0.21 3.54 8.06 -2.91 -0.02 3.52 16 39 H 0.09 2.40 6.47 -2.39 -0.02 2.38 16 40 H 0.10 2.54 8.12 -2.39 -0.02 2.52 16 Total: -1.00 -66.10 316.73 2.62 -63.47 By element: Atomic # 1 Polarization: 26.61 SS G_CDS: -0.93 Total: 25.68 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: 4.85 Total: -4.87 kcal Atomic # 7 Polarization: -98.01 SS G_CDS: -3.06 Total: -101.07 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: -0.05 Total: -24.30 kcal Atomic # 14 Polarization: 39.28 SS G_CDS: 1.81 Total: 41.09 kcal Total: -66.10 2.62 -63.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266337422.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.431 kcal (2) G-P(sol) polarization free energy of solvation -66.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds