Wall clock time and date at job start Mon Mar 30 2020 20:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.46957 * 2 1 4 4 C 1.50695 * 109.47410 * 119.99906 * 2 1 3 5 5 H 1.07999 * 120.00450 * 119.99766 * 4 2 1 6 6 C 1.37877 * 120.00362 * 300.00250 * 4 2 1 7 7 N 1.31522 * 119.99627 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00416 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47042 * 60.00327 * 8 6 4 10 10 H 1.48498 * 109.47116 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47380 * 300.00320 * 8 6 4 12 12 N 1.46504 * 109.47368 * 240.00280 * 2 1 3 13 13 C 1.46500 * 119.99611 * 300.00171 * 12 2 1 14 14 C 1.34777 * 119.99869 * 119.99464 * 12 2 1 15 15 O 1.21282 * 120.00087 * 0.02562 * 14 12 2 16 16 C 1.50699 * 119.99476 * 179.97438 * 14 12 2 17 17 H 1.09003 * 109.45885 * 59.98966 * 16 14 12 18 18 C 1.53110 * 109.50064 * 179.97438 * 16 14 12 19 19 C 1.53361 * 109.55215 * 190.25053 * 18 16 14 20 20 C 1.50838 * 108.38013 * 310.07533 * 19 18 16 21 21 C 1.39296 * 127.89838 * 196.64655 * 20 19 18 22 22 N 1.31066 * 108.08241 * 179.84201 * 21 20 19 23 23 N 1.40304 * 108.26410 * 359.97438 * 22 21 20 24 24 H 0.97006 * 126.08690 * 180.02562 * 23 22 21 25 25 C 1.34320 * 107.82064 * 0.06325 * 23 22 21 26 26 C 1.50824 * 128.03696 * 179.87745 * 25 23 22 27 27 H 1.08998 * 109.47062 * 299.99389 * 1 2 3 28 28 H 1.08997 * 109.47058 * 59.99987 * 1 2 3 29 29 H 1.09000 * 109.46785 * 179.97438 * 1 2 3 30 30 H 0.97001 * 119.99764 * 180.02562 * 7 6 4 31 31 H 1.09005 * 109.46637 * 269.99660 * 13 12 2 32 32 H 1.08994 * 109.47534 * 29.99237 * 13 12 2 33 33 H 1.08994 * 109.46991 * 150.00316 * 13 12 2 34 34 H 1.08998 * 109.43283 * 70.23520 * 18 16 14 35 35 H 1.09010 * 109.45916 * 310.28615 * 18 16 14 36 36 H 1.09004 * 109.68099 * 190.35116 * 19 18 16 37 37 H 1.08999 * 109.71287 * 69.81437 * 19 18 16 38 38 H 1.08006 * 125.96111 * 359.86557 * 21 20 19 39 39 H 1.09002 * 109.68327 * 316.28055 * 26 25 23 40 40 H 1.08999 * 109.68041 * 76.79656 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9427 0.8296 2.6034 8 14 2.3215 -1.1203 4.0079 9 1 3.8065 -1.1207 4.0081 10 1 1.8261 -0.4206 5.2204 11 1 1.8261 -2.5203 4.0077 12 7 2.0184 -0.6906 -1.1962 13 6 1.6644 -2.0931 -1.4281 14 6 2.7932 -0.0354 -2.0834 15 8 3.0864 1.1256 -1.8912 16 6 3.2960 -0.7460 -3.3135 17 1 2.4483 -1.0891 -3.9067 18 6 4.1460 0.2160 -4.1479 19 6 4.4447 -0.4153 -5.5133 20 6 4.9691 -1.8114 -5.2873 21 6 5.6550 -2.6239 -6.1872 22 7 5.9296 -3.7556 -5.5858 23 7 5.4234 -3.6931 -4.2787 24 1 5.4839 -4.3918 -3.6086 25 6 4.8394 -2.4938 -4.1210 26 6 4.1489 -1.9504 -2.8951 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 0.7087 1.1612 3.4844 31 1 2.4158 -2.7376 -0.9717 32 1 0.6905 -2.3002 -0.9847 33 1 1.6239 -2.2851 -2.5002 34 1 5.0827 0.4166 -3.6278 35 1 3.6027 1.1502 -4.2907 36 1 5.1946 0.1785 -6.0361 37 1 3.5312 -0.4578 -6.1064 38 1 5.9153 -2.3662 -7.2032 39 1 3.5092 -2.7198 -2.4627 40 1 4.8933 -1.6377 -2.1629 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266337423.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:18:27 Heat of formation + Delta-G solvation = 10.279883 kcal Electronic energy + Delta-G solvation = -22023.862460 eV Core-core repulsion = 18838.982639 eV Total energy + Delta-G solvation = -3184.879821 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.51505 -40.90174 -37.44905 -36.85622 -34.82617 -33.50456 -31.75019 -30.25405 -30.03141 -27.70810 -27.27686 -25.21849 -24.00447 -22.63675 -22.19692 -20.11911 -19.55773 -18.56195 -18.23383 -17.79432 -17.06485 -16.33724 -16.12017 -15.89944 -15.16571 -15.03981 -14.73974 -14.61680 -14.35726 -14.20478 -13.79932 -13.66822 -13.39910 -12.99617 -12.88340 -12.84282 -12.67644 -12.57616 -12.46592 -12.16341 -12.12925 -11.82515 -11.63991 -11.45588 -11.14896 -10.60095 -10.45064 -10.41190 -9.30076 -9.21396 -8.12918 -6.29307 0.91561 1.42034 1.43962 1.51192 1.72501 1.86672 2.02904 2.32462 2.50920 3.15152 3.45503 3.71187 3.83514 3.94041 4.05965 4.19095 4.34673 4.45825 4.51241 4.57413 4.64280 4.71269 4.79859 4.87337 4.90758 4.94838 5.06911 5.09383 5.10425 5.28436 5.37913 5.43118 5.49025 5.65227 5.69446 5.78142 6.05862 6.18351 6.40848 6.74133 6.78826 6.86368 7.34268 7.51075 8.91101 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026112 B = 0.004557 C = 0.004179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.050661 B = 6142.635879 C = 6698.869882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.260 3.740 3 H 0.008 0.992 4 C -0.536 4.536 5 H 0.062 0.938 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.962 3.038 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.262 1.262 12 N -0.598 5.598 13 C 0.077 3.923 14 C 0.499 3.501 15 O -0.600 6.600 16 C -0.083 4.083 17 H 0.121 0.879 18 C -0.098 4.098 19 C -0.029 4.029 20 C -0.250 4.250 21 C 0.057 3.943 22 N -0.327 5.327 23 N -0.467 5.467 24 H 0.447 0.553 25 C 0.092 3.908 26 C -0.050 4.050 27 H 0.066 0.934 28 H 0.020 0.980 29 H 0.048 0.952 30 H 0.264 0.736 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.094 0.906 34 H 0.051 0.949 35 H 0.066 0.934 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.210 0.790 39 H 0.112 0.888 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.603 -9.480 -15.352 18.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.158 3.842 3 H 0.026 0.974 4 C -0.574 4.574 5 H 0.080 0.920 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.788 3.212 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.187 1.187 12 N -0.328 5.328 13 C -0.065 4.065 14 C 0.288 3.712 15 O -0.482 6.482 16 C -0.105 4.105 17 H 0.139 0.861 18 C -0.136 4.136 19 C -0.067 4.067 20 C -0.261 4.261 21 C -0.128 4.128 22 N -0.150 5.150 23 N -0.175 5.175 24 H 0.292 0.708 25 C -0.039 4.039 26 C -0.089 4.089 27 H 0.085 0.915 28 H 0.039 0.961 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.112 0.888 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.107 0.893 37 H 0.104 0.896 38 H 0.226 0.774 39 H 0.130 0.870 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.200 -9.945 -15.233 18.920 hybrid contribution -0.124 0.450 1.779 1.840 sum 5.075 -9.495 -13.453 17.231 Atomic orbital electron populations 1.21886 0.97280 1.00132 0.99931 1.18526 0.91559 0.92256 0.81864 0.97368 1.21545 1.31790 1.13017 0.91061 0.91952 1.25720 0.95131 0.95632 1.01986 1.70022 1.37353 1.23950 1.24389 0.85550 0.78360 0.79031 0.78304 1.20340 1.21165 1.18665 1.48215 1.48980 1.13256 1.22312 1.21992 1.01677 0.80681 1.02115 1.21232 0.78136 0.86658 0.85169 1.90626 1.59989 1.19692 1.77899 1.21225 1.00070 0.95747 0.93445 0.86080 1.21387 0.98971 0.97643 0.95573 1.19981 1.01417 0.89805 0.95517 1.20213 1.11653 1.00183 0.94039 1.24057 0.97041 0.90421 1.01245 1.77442 1.23257 1.23485 0.90811 1.46047 1.45219 1.14063 1.12208 0.70767 1.20852 0.98001 0.87475 0.97539 1.20438 0.98474 0.97091 0.92942 0.91540 0.96091 0.93281 0.92733 0.91963 0.91179 0.88751 0.93057 0.91489 0.89314 0.89574 0.77361 0.86955 0.90496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.31 8.95 71.98 0.64 -5.67 16 2 C 0.26 13.21 2.64 44.24 0.12 13.32 16 3 H 0.01 0.51 6.90 -2.38 -0.02 0.50 16 4 C -0.54 -28.33 8.37 25.60 0.21 -28.12 16 5 H 0.06 3.16 7.65 -2.91 -0.02 3.13 16 6 C 0.01 0.80 5.30 84.65 0.45 1.25 16 7 N -0.92 -52.48 11.32 21.45 0.24 -52.24 16 8 Si 0.96 42.31 29.54 68.60 2.03 44.34 16 9 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 10 H -0.29 -12.49 7.11 99.48 0.71 -11.79 16 11 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 12 N -0.60 -23.81 2.75 -826.79 -2.28 -26.09 16 13 C 0.08 2.20 8.03 127.77 1.03 3.23 16 14 C 0.50 19.46 7.06 87.66 0.62 20.08 16 15 O -0.60 -29.60 15.14 -3.04 -0.05 -29.64 16 16 C -0.08 -2.19 1.69 -11.37 -0.02 -2.21 16 17 H 0.12 2.61 7.37 -2.39 -0.02 2.59 16 18 C -0.10 -2.49 4.64 30.75 0.14 -2.35 16 19 C -0.03 -0.54 6.28 30.01 0.19 -0.35 16 20 C -0.25 -5.16 5.91 -20.14 -0.12 -5.28 16 21 C 0.06 1.11 12.00 85.06 1.02 2.13 16 22 N -0.33 -7.46 12.71 -57.28 -0.73 -8.19 16 23 N -0.47 -9.40 7.34 -47.99 -0.35 -9.75 16 24 H 0.45 6.64 8.96 -213.18 -1.91 4.73 16 25 C 0.09 1.97 7.08 41.64 0.29 2.26 16 26 C -0.05 -1.14 5.08 30.02 0.15 -0.99 16 27 H 0.07 3.52 6.07 -2.39 -0.01 3.50 16 28 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.05 2.07 6.66 -2.39 -0.02 2.06 16 30 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 31 H 0.06 1.63 7.18 -2.38 -0.02 1.61 16 32 H 0.07 2.06 6.43 -2.39 -0.02 2.05 16 33 H 0.09 1.92 5.90 -2.39 -0.01 1.91 16 34 H 0.05 1.47 8.11 -2.39 -0.02 1.46 16 35 H 0.07 1.87 7.76 -2.38 -0.02 1.85 16 36 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.21 2.58 8.06 -2.91 -0.02 2.55 16 39 H 0.11 2.12 4.92 -2.39 -0.01 2.11 16 40 H 0.08 2.00 8.12 -2.39 -0.02 1.98 16 Total: -1.00 -71.17 315.98 2.75 -68.42 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -0.84 Total: 15.84 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: 4.73 Total: -2.68 kcal Atomic # 7 Polarization: -93.15 SS G_CDS: -3.11 Total: -96.27 kcal Atomic # 8 Polarization: -29.60 SS G_CDS: -0.05 Total: -29.64 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Total: -71.17 2.75 -68.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266337423.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.701 kcal (2) G-P(sol) polarization free energy of solvation -71.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds