Wall clock time and date at job start Mon Mar 30 2020 20:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09012 * 109.46938 * 2 1 4 4 C 1.50706 * 109.47325 * 119.99540 * 2 1 3 5 5 H 1.08002 * 119.99356 * 114.36872 * 4 2 1 6 6 C 1.37877 * 120.00116 * 294.37316 * 4 2 1 7 7 N 1.31510 * 119.99957 * 157.15012 * 6 4 2 8 8 Si 1.86799 * 120.00009 * 337.14725 * 6 4 2 9 9 H 1.48496 * 109.47128 * 180.02562 * 8 6 4 10 10 H 1.48498 * 109.47245 * 60.00265 * 8 6 4 11 11 H 1.48497 * 109.47243 * 300.00183 * 8 6 4 12 12 N 1.46494 * 109.47032 * 240.00273 * 2 1 3 13 13 C 1.46500 * 119.99749 * 299.99299 * 12 2 1 14 14 C 1.34780 * 120.00250 * 120.00233 * 12 2 1 15 15 O 1.21276 * 119.99651 * 359.97438 * 14 12 2 16 16 C 1.50696 * 120.00065 * 179.97438 * 14 12 2 17 17 H 1.09000 * 109.46966 * 300.00158 * 16 14 12 18 18 C 1.53103 * 109.46525 * 180.02562 * 16 14 12 19 19 C 1.53363 * 109.51391 * 169.72043 * 18 16 14 20 20 C 1.50841 * 108.38197 * 49.94691 * 19 18 16 21 21 C 1.39298 * 127.89979 * 163.42103 * 20 19 18 22 22 N 1.31072 * 108.07598 * 180.02562 * 21 20 19 23 23 N 1.40299 * 108.27212 * 0.02562 * 22 21 20 24 24 H 0.96998 * 126.09179 * 179.91387 * 23 22 21 25 25 C 1.34327 * 107.81411 * 359.93573 * 23 22 21 26 26 C 1.50826 * 128.03412 * 180.13443 * 25 23 22 27 27 H 1.08993 * 109.47101 * 173.29276 * 1 2 3 28 28 H 1.09004 * 109.47182 * 293.29554 * 1 2 3 29 29 H 1.09004 * 109.47399 * 53.28961 * 1 2 3 30 30 H 0.97003 * 119.99465 * 354.91849 * 7 6 4 31 31 H 1.08997 * 109.47065 * 90.00843 * 13 12 2 32 32 H 1.09004 * 109.47338 * 210.00001 * 13 12 2 33 33 H 1.08994 * 109.47566 * 330.00517 * 13 12 2 34 34 H 1.09001 * 109.46968 * 289.73264 * 18 16 14 35 35 H 1.09006 * 109.46270 * 49.72352 * 18 16 14 36 36 H 1.09001 * 109.68362 * 169.67048 * 19 18 16 37 37 H 1.09001 * 109.68749 * 290.22483 * 19 18 16 38 38 H 1.07988 * 125.96323 * 0.02562 * 21 20 19 39 39 H 1.09000 * 109.67128 * 43.63510 * 26 25 23 40 40 H 1.08994 * 109.68981 * 283.07629 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.5762 -1.6384 1.1340 6 6 1.7976 -0.1754 2.4795 7 7 1.8130 -0.9519 3.5408 8 14 1.4577 1.6521 2.6640 9 1 1.2401 1.9728 4.0975 10 1 0.2447 2.0110 1.8863 11 1 2.6188 2.4254 2.1550 12 7 2.0182 -0.6905 -1.1962 13 6 1.6644 -2.0931 -1.4279 14 6 2.7931 -0.0355 -2.0833 15 8 3.0858 1.1257 -1.8916 16 6 3.2959 -0.7461 -3.3135 17 1 3.9016 -1.6023 -3.0165 18 6 4.1469 0.2162 -4.1465 19 6 4.8661 -0.5636 -5.2541 20 6 3.8498 -1.4155 -5.9728 21 6 3.9750 -2.0309 -7.2163 22 7 2.8602 -2.6735 -7.4661 23 7 1.9901 -2.4827 -6.3821 24 1 1.0938 -2.8440 -6.2985 25 6 2.6194 -1.7104 -5.4811 26 6 2.1030 -1.2282 -4.1485 27 1 -0.3633 -1.0206 -0.1200 28 1 -0.3634 0.4064 0.9439 29 1 -0.3634 0.6143 -0.8239 30 1 1.9161 -1.9110 3.4385 31 1 0.7376 -2.1444 -1.9993 32 1 2.4629 -2.5818 -1.9863 33 1 1.5295 -2.5968 -0.4708 34 1 3.5047 0.9744 -4.5945 35 1 4.8843 0.6979 -3.5042 36 1 5.3233 0.1335 -5.9564 37 1 5.6344 -1.2003 -4.8154 38 1 4.8395 -1.9863 -7.8617 39 1 1.6007 -2.0461 -3.6319 40 1 1.4045 -0.4056 -4.3011 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266337424.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:18:30 Heat of formation + Delta-G solvation = 30.470926 kcal Electronic energy + Delta-G solvation = -22051.946226 eV Core-core repulsion = 18867.941954 eV Total energy + Delta-G solvation = -3184.004272 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.67824 -39.58567 -36.24162 -35.45339 -33.12311 -32.49772 -30.68091 -29.31224 -29.15050 -26.44498 -24.86890 -24.09250 -22.97442 -21.72887 -20.67231 -18.95675 -18.33694 -17.56657 -17.40464 -16.54760 -15.50788 -15.10113 -14.95638 -14.41008 -14.03111 -13.94724 -13.56798 -13.34080 -13.13349 -12.99032 -12.63483 -12.52643 -11.97775 -11.89855 -11.78117 -11.61394 -11.37861 -11.30480 -10.84577 -10.67587 -10.61622 -10.51656 -10.11699 -9.80954 -9.64666 -9.19453 -9.06457 -8.40611 -8.34076 -7.82741 -6.53988 -4.16807 1.72447 2.64591 2.66009 3.20749 3.37918 3.47628 3.60376 3.74663 4.41164 4.45224 4.62151 4.70470 4.83049 5.05674 5.09304 5.16106 5.27397 5.37806 5.40451 5.49954 5.59939 5.73283 5.75142 5.81559 5.89309 6.17097 6.22594 6.25060 6.31127 6.34796 6.38611 6.54933 6.56511 6.90588 7.11242 7.12719 7.39997 7.51571 7.81769 8.25119 8.30458 8.71833 8.90069 9.48589 10.81064 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034451 B = 0.004383 C = 0.004173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.547320 B = 6386.781261 C = 6708.574598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.234 3.766 3 H 0.055 0.945 4 C -0.618 4.618 5 H 0.062 0.938 6 C 0.044 3.956 7 N -0.894 5.894 8 Si 1.031 2.969 9 H -0.284 1.284 10 H -0.276 1.276 11 H -0.279 1.279 12 N -0.586 5.586 13 C 0.081 3.919 14 C 0.509 3.491 15 O -0.548 6.548 16 C -0.098 4.098 17 H 0.098 0.902 18 C -0.099 4.099 19 C -0.041 4.041 20 C -0.238 4.238 21 C 0.057 3.943 22 N -0.302 5.302 23 N -0.471 5.471 24 H 0.437 0.563 25 C 0.095 3.905 26 C -0.058 4.058 27 H 0.045 0.955 28 H 0.061 0.939 29 H 0.025 0.975 30 H 0.269 0.731 31 H 0.044 0.956 32 H 0.058 0.942 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.182 0.818 39 H 0.095 0.905 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.963 -2.864 -17.873 18.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.133 3.867 3 H 0.072 0.928 4 C -0.656 4.656 5 H 0.080 0.920 6 C -0.163 4.163 7 N -0.526 5.526 8 Si 0.859 3.141 9 H -0.209 1.209 10 H -0.202 1.202 11 H -0.205 1.205 12 N -0.316 5.316 13 C -0.063 4.063 14 C 0.295 3.705 15 O -0.427 6.427 16 C -0.120 4.120 17 H 0.116 0.884 18 C -0.137 4.137 19 C -0.079 4.079 20 C -0.250 4.250 21 C -0.128 4.128 22 N -0.125 5.125 23 N -0.178 5.178 24 H 0.281 0.719 25 C -0.035 4.035 26 C -0.097 4.097 27 H 0.064 0.936 28 H 0.080 0.920 29 H 0.044 0.956 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.100 0.900 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.199 0.801 39 H 0.113 0.887 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.230 -1.817 -17.457 17.553 hybrid contribution 0.161 -1.220 -0.531 1.341 sum 0.391 -3.037 -17.988 18.247 Atomic orbital electron populations 1.22423 0.98729 1.00042 1.00131 1.19175 0.90307 0.94746 0.82497 0.92750 1.22095 1.41376 1.11162 0.90942 0.92017 1.25622 0.93196 1.05698 0.91830 1.70870 1.43573 1.06380 1.31773 0.84220 0.77673 0.76074 0.76172 1.20928 1.20214 1.20456 1.47964 1.49110 1.11514 1.23052 1.21760 0.98631 0.83316 1.02588 1.20305 0.79088 0.87038 0.84035 1.90644 1.58068 1.17055 1.76928 1.21279 0.96847 1.00097 0.93745 0.88384 1.21417 0.99151 0.96940 0.96194 1.20035 0.95220 0.96513 0.96124 1.20007 0.97102 1.10086 0.97771 1.23592 0.96762 0.96168 0.96320 1.77468 1.02035 1.24883 1.08101 1.46019 1.15959 1.41367 1.14450 0.71947 1.20914 0.93897 0.95232 0.93438 1.20567 0.97995 1.01944 0.89203 0.93577 0.91971 0.95626 0.92082 0.93716 0.92371 0.89952 0.91269 0.90096 0.90805 0.91182 0.80110 0.88703 0.89199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 9.02 37.15 0.34 -2.93 16 2 C 0.23 5.51 2.23 -69.09 -0.15 5.36 16 3 H 0.05 1.41 5.48 -51.92 -0.28 1.13 16 4 C -0.62 -16.59 8.30 -34.44 -0.29 -16.87 16 5 H 0.06 1.76 7.38 -52.49 -0.39 1.37 16 6 C 0.04 1.22 5.20 -17.82 -0.09 1.13 16 7 N -0.89 -26.36 13.70 55.43 0.76 -25.60 16 8 Si 1.03 24.97 26.44 -169.99 -4.49 20.47 16 9 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 10 H -0.28 -6.18 6.12 56.52 0.35 -5.84 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 N -0.59 -11.48 2.75 -175.27 -0.48 -11.96 16 13 C 0.08 1.24 7.65 59.85 0.46 1.70 16 14 C 0.51 9.58 7.06 -10.99 -0.08 9.50 16 15 O -0.55 -12.42 15.13 5.56 0.08 -12.34 16 16 C -0.10 -1.33 1.69 -91.52 -0.15 -1.49 16 17 H 0.10 1.27 7.37 -51.93 -0.38 0.88 16 18 C -0.10 -1.27 4.64 -26.49 -0.12 -1.39 16 19 C -0.04 -0.42 6.28 -27.63 -0.17 -0.60 16 20 C -0.24 -2.71 5.91 -105.05 -0.62 -3.33 16 21 C 0.06 0.62 12.00 -17.48 -0.21 0.41 16 22 N -0.30 -3.68 12.71 30.54 0.39 -3.29 16 23 N -0.47 -4.97 7.34 33.48 0.25 -4.73 16 24 H 0.44 3.36 8.96 -182.45 -1.64 1.72 16 25 C 0.10 1.07 7.08 -82.33 -0.58 0.49 16 26 C -0.06 -0.65 5.08 -27.62 -0.14 -0.79 16 27 H 0.05 0.90 7.45 -51.93 -0.39 0.51 16 28 H 0.06 1.37 5.44 -51.93 -0.28 1.09 16 29 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.27 7.85 8.73 -40.82 -0.36 7.49 16 31 H 0.04 0.57 7.19 -51.93 -0.37 0.20 16 32 H 0.06 0.74 5.89 -51.93 -0.31 0.44 16 33 H 0.08 1.44 6.92 -51.93 -0.36 1.08 16 34 H 0.07 0.92 8.11 -51.93 -0.42 0.50 16 35 H 0.08 1.13 7.75 -51.93 -0.40 0.73 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.18 1.40 8.06 -52.49 -0.42 0.98 16 39 H 0.09 0.94 4.92 -51.93 -0.26 0.69 16 40 H 0.09 1.04 8.12 -51.93 -0.42 0.61 16 LS Contribution 312.75 15.07 4.71 4.71 Total: -1.00 -32.79 312.75 -7.41 -40.20 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -6.80 Total: 1.37 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: -1.82 Total: -8.82 kcal Atomic # 7 Polarization: -46.50 SS G_CDS: 0.91 Total: -45.59 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: 0.08 Total: -12.34 kcal Atomic # 14 Polarization: 24.97 SS G_CDS: -4.49 Total: 20.47 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.79 -7.41 -40.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266337424.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.667 kcal (2) G-P(sol) polarization free energy of solvation -32.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds