Wall clock time and date at job start Mon Mar 30 2020 20:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09012 * 109.46938 * 2 1 4 4 C 1.50706 * 109.47325 * 119.99540 * 2 1 3 5 5 H 1.08002 * 119.99356 * 114.36872 * 4 2 1 6 6 C 1.37877 * 120.00116 * 294.37316 * 4 2 1 7 7 N 1.31510 * 119.99957 * 157.15012 * 6 4 2 8 8 Si 1.86799 * 120.00009 * 337.14725 * 6 4 2 9 9 H 1.48496 * 109.47128 * 180.02562 * 8 6 4 10 10 H 1.48498 * 109.47245 * 60.00265 * 8 6 4 11 11 H 1.48497 * 109.47243 * 300.00183 * 8 6 4 12 12 N 1.46494 * 109.47032 * 240.00273 * 2 1 3 13 13 C 1.46500 * 119.99749 * 299.99299 * 12 2 1 14 14 C 1.34780 * 120.00250 * 120.00233 * 12 2 1 15 15 O 1.21276 * 119.99651 * 359.97438 * 14 12 2 16 16 C 1.50696 * 120.00065 * 179.97438 * 14 12 2 17 17 H 1.09000 * 109.46966 * 300.00158 * 16 14 12 18 18 C 1.53103 * 109.46525 * 180.02562 * 16 14 12 19 19 C 1.53363 * 109.51391 * 169.72043 * 18 16 14 20 20 C 1.50841 * 108.38197 * 49.94691 * 19 18 16 21 21 C 1.39298 * 127.89979 * 163.42103 * 20 19 18 22 22 N 1.31072 * 108.07598 * 180.02562 * 21 20 19 23 23 N 1.40299 * 108.27212 * 0.02562 * 22 21 20 24 24 H 0.96998 * 126.09179 * 179.91387 * 23 22 21 25 25 C 1.34327 * 107.81411 * 359.93573 * 23 22 21 26 26 C 1.50826 * 128.03412 * 180.13443 * 25 23 22 27 27 H 1.08993 * 109.47101 * 173.29276 * 1 2 3 28 28 H 1.09004 * 109.47182 * 293.29554 * 1 2 3 29 29 H 1.09004 * 109.47399 * 53.28961 * 1 2 3 30 30 H 0.97003 * 119.99465 * 354.91849 * 7 6 4 31 31 H 1.08997 * 109.47065 * 90.00843 * 13 12 2 32 32 H 1.09004 * 109.47338 * 210.00001 * 13 12 2 33 33 H 1.08994 * 109.47566 * 330.00517 * 13 12 2 34 34 H 1.09001 * 109.46968 * 289.73264 * 18 16 14 35 35 H 1.09006 * 109.46270 * 49.72352 * 18 16 14 36 36 H 1.09001 * 109.68362 * 169.67048 * 19 18 16 37 37 H 1.09001 * 109.68749 * 290.22483 * 19 18 16 38 38 H 1.07988 * 125.96323 * 0.02562 * 21 20 19 39 39 H 1.09000 * 109.67128 * 43.63510 * 26 25 23 40 40 H 1.08994 * 109.68981 * 283.07629 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.5762 -1.6384 1.1340 6 6 1.7976 -0.1754 2.4795 7 7 1.8130 -0.9519 3.5408 8 14 1.4577 1.6521 2.6640 9 1 1.2401 1.9728 4.0975 10 1 0.2447 2.0110 1.8863 11 1 2.6188 2.4254 2.1550 12 7 2.0182 -0.6905 -1.1962 13 6 1.6644 -2.0931 -1.4279 14 6 2.7931 -0.0355 -2.0833 15 8 3.0858 1.1257 -1.8916 16 6 3.2959 -0.7461 -3.3135 17 1 3.9016 -1.6023 -3.0165 18 6 4.1469 0.2162 -4.1465 19 6 4.8661 -0.5636 -5.2541 20 6 3.8498 -1.4155 -5.9728 21 6 3.9750 -2.0309 -7.2163 22 7 2.8602 -2.6735 -7.4661 23 7 1.9901 -2.4827 -6.3821 24 1 1.0938 -2.8440 -6.2985 25 6 2.6194 -1.7104 -5.4811 26 6 2.1030 -1.2282 -4.1485 27 1 -0.3633 -1.0206 -0.1200 28 1 -0.3634 0.4064 0.9439 29 1 -0.3634 0.6143 -0.8239 30 1 1.9161 -1.9110 3.4385 31 1 0.7376 -2.1444 -1.9993 32 1 2.4629 -2.5818 -1.9863 33 1 1.5295 -2.5968 -0.4708 34 1 3.5047 0.9744 -4.5945 35 1 4.8843 0.6979 -3.5042 36 1 5.3233 0.1335 -5.9564 37 1 5.6344 -1.2003 -4.8154 38 1 4.8395 -1.9863 -7.8617 39 1 1.6007 -2.0461 -3.6319 40 1 1.4045 -0.4056 -4.3011 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266337424.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:18:30 Heat of formation + Delta-G solvation = 8.103344 kcal Electronic energy + Delta-G solvation = -22052.916158 eV Core-core repulsion = 18867.941954 eV Total energy + Delta-G solvation = -3184.974203 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.54338 -40.99934 -37.55125 -36.91979 -34.89600 -33.57893 -32.22781 -30.42894 -30.10495 -27.80418 -26.81844 -25.22118 -24.04000 -22.61823 -22.13971 -20.17121 -19.57337 -19.55115 -18.36224 -17.98395 -16.92585 -16.44247 -16.02666 -15.65101 -15.25277 -15.16989 -14.79386 -14.67439 -14.54931 -14.22195 -14.01934 -13.76849 -13.52077 -13.39785 -13.21615 -12.92004 -12.76773 -12.54209 -12.41732 -11.92812 -11.86458 -11.70426 -11.66035 -11.47955 -11.22303 -10.60846 -10.46047 -10.45315 -9.49760 -9.23868 -8.70950 -6.36800 0.89583 1.43531 1.50921 1.66559 1.69893 1.84248 1.97650 2.29803 2.43593 2.98443 3.39836 3.66622 3.78275 3.91602 4.02329 4.14867 4.29471 4.39951 4.46490 4.51489 4.56350 4.59062 4.63819 4.72596 4.79435 4.82457 4.91135 4.98979 5.06504 5.15850 5.25834 5.35041 5.38471 5.40949 5.71391 5.75235 5.84029 6.05416 6.40030 6.57398 6.71893 6.73362 7.27393 7.40375 8.59879 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034451 B = 0.004383 C = 0.004173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.547320 B = 6386.781261 C = 6708.574598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.233 3.767 3 H 0.030 0.970 4 C -0.612 4.612 5 H 0.035 0.965 6 C 0.000 4.000 7 N -0.925 5.925 8 Si 1.064 2.936 9 H -0.282 1.282 10 H -0.246 1.246 11 H -0.282 1.282 12 N -0.594 5.594 13 C 0.078 3.922 14 C 0.503 3.497 15 O -0.593 6.593 16 C -0.086 4.086 17 H 0.110 0.890 18 C -0.097 4.097 19 C -0.031 4.031 20 C -0.251 4.251 21 C 0.056 3.944 22 N -0.327 5.327 23 N -0.465 5.465 24 H 0.448 0.552 25 C 0.092 3.908 26 C -0.049 4.049 27 H 0.059 0.941 28 H 0.049 0.951 29 H 0.047 0.953 30 H 0.259 0.741 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.208 0.792 39 H 0.112 0.888 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.443 -3.157 -20.168 20.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.130 3.870 3 H 0.048 0.952 4 C -0.650 4.650 5 H 0.053 0.947 6 C -0.202 4.202 7 N -0.559 5.559 8 Si 0.887 3.113 9 H -0.208 1.208 10 H -0.170 1.170 11 H -0.208 1.208 12 N -0.324 5.324 13 C -0.065 4.065 14 C 0.292 3.708 15 O -0.475 6.475 16 C -0.108 4.108 17 H 0.128 0.872 18 C -0.135 4.135 19 C -0.069 4.069 20 C -0.262 4.262 21 C -0.129 4.129 22 N -0.150 5.150 23 N -0.174 5.174 24 H 0.294 0.706 25 C -0.039 4.039 26 C -0.087 4.087 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.098 0.902 32 H 0.105 0.895 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.108 0.892 37 H 0.098 0.902 38 H 0.225 0.775 39 H 0.130 0.870 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.315 -2.153 -19.786 19.905 hybrid contribution 0.390 -1.181 0.142 1.252 sum 0.075 -3.334 -19.644 19.925 Atomic orbital electron populations 1.22254 0.96466 1.01361 1.00395 1.18911 0.91938 0.93336 0.82858 0.95206 1.22259 1.40158 1.10006 0.92595 0.94723 1.26694 0.93060 1.08486 0.91937 1.70963 1.46369 1.05926 1.32659 0.83777 0.78702 0.72225 0.76570 1.20804 1.17007 1.20838 1.48008 1.49313 1.13082 1.22024 1.21988 1.01436 0.80820 1.02223 1.21183 0.77921 0.86704 0.85022 1.90618 1.59459 1.19265 1.78136 1.21224 0.97915 0.99970 0.91683 0.87167 1.21385 0.98670 0.96902 0.96529 1.19981 0.94949 0.96567 0.95437 1.20203 0.97393 1.10420 0.98202 1.24041 0.97162 0.95264 0.96387 1.77447 1.02791 1.25815 1.08936 1.46029 1.16403 1.41061 1.13901 0.70648 1.20864 0.94122 0.95461 0.93418 1.20454 0.96783 1.02457 0.89052 0.92216 0.93194 0.93362 0.93222 0.90221 0.89473 0.92447 0.92112 0.91792 0.89176 0.90245 0.77547 0.86976 0.89237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.90 9.02 71.98 0.65 -5.25 16 2 C 0.23 10.83 2.23 44.25 0.10 10.93 16 3 H 0.03 1.55 5.48 -2.38 -0.01 1.54 16 4 C -0.61 -33.33 8.30 25.60 0.21 -33.12 16 5 H 0.03 2.03 7.38 -2.91 -0.02 2.01 16 6 C 0.00 -0.02 5.20 84.66 0.44 0.42 16 7 N -0.92 -55.76 13.70 21.45 0.29 -55.47 16 8 Si 1.06 50.57 26.44 68.60 1.81 52.38 16 9 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 10 H -0.25 -10.41 6.12 99.48 0.61 -9.80 16 11 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 12 N -0.59 -22.59 2.75 -826.81 -2.28 -24.87 16 13 C 0.08 2.21 7.65 127.77 0.98 3.18 16 14 C 0.50 18.45 7.06 87.66 0.62 19.07 16 15 O -0.59 -27.01 15.13 -3.02 -0.05 -27.05 16 16 C -0.09 -2.18 1.69 -11.38 -0.02 -2.19 16 17 H 0.11 2.55 7.37 -2.39 -0.02 2.53 16 18 C -0.10 -2.34 4.64 30.75 0.14 -2.20 16 19 C -0.03 -0.57 6.28 30.01 0.19 -0.38 16 20 C -0.25 -4.96 5.91 -20.14 -0.12 -5.08 16 21 C 0.06 1.06 12.00 85.06 1.02 2.08 16 22 N -0.33 -7.11 12.71 -57.28 -0.73 -7.84 16 23 N -0.47 -8.53 7.34 -47.99 -0.35 -8.88 16 24 H 0.45 5.64 8.96 -213.19 -1.91 3.73 16 25 C 0.09 1.80 7.08 41.64 0.29 2.09 16 26 C -0.05 -0.95 5.08 30.02 0.15 -0.79 16 27 H 0.06 2.20 7.45 -2.39 -0.02 2.19 16 28 H 0.05 2.12 5.44 -2.38 -0.01 2.10 16 29 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 30 H 0.26 15.60 8.73 -92.71 -0.81 14.79 16 31 H 0.08 1.73 7.19 -2.39 -0.02 1.71 16 32 H 0.09 1.96 5.89 -2.38 -0.01 1.94 16 33 H 0.06 1.94 6.92 -2.39 -0.02 1.93 16 34 H 0.06 1.56 8.11 -2.39 -0.02 1.54 16 35 H 0.06 1.76 7.75 -2.38 -0.02 1.74 16 36 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.21 2.50 8.06 -2.92 -0.02 2.48 16 39 H 0.11 1.78 4.92 -2.39 -0.01 1.77 16 40 H 0.09 1.81 8.12 -2.39 -0.02 1.79 16 Total: -1.00 -72.37 312.75 2.38 -69.99 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -0.98 Total: 12.98 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: 4.66 Total: -11.24 kcal Atomic # 7 Polarization: -93.99 SS G_CDS: -3.06 Total: -97.06 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: -0.05 Total: -27.05 kcal Atomic # 14 Polarization: 50.57 SS G_CDS: 1.81 Total: 52.38 kcal Total: -72.37 2.38 -69.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266337424.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.090 kcal (2) G-P(sol) polarization free energy of solvation -72.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds