Wall clock time and date at job start Mon Mar 30 2020 20:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46493 * 109.47440 * 2 1 4 4 C 1.46505 * 120.00090 * 93.18761 * 3 2 1 5 5 C 1.50704 * 109.47152 * 264.86814 * 4 3 2 6 6 H 1.07997 * 119.99518 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99652 * 179.97438 * 5 4 3 8 8 N 1.31511 * 119.99404 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 120.00320 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.46622 * 90.00202 * 9 7 5 11 11 H 1.48501 * 109.47030 * 330.00479 * 9 7 5 12 12 H 1.48497 * 109.47162 * 210.00048 * 9 7 5 13 13 C 1.34779 * 120.00058 * 273.19036 * 3 2 1 14 14 O 1.21282 * 120.00120 * 4.16356 * 13 3 2 15 15 C 1.50703 * 120.00109 * 184.16616 * 13 3 2 16 16 H 1.09000 * 109.46178 * 23.80701 * 15 13 3 17 17 C 1.53108 * 109.46284 * 143.78905 * 15 13 3 18 18 C 1.53363 * 109.50864 * 190.27752 * 17 15 13 19 19 C 1.50823 * 108.38807 * 310.06832 * 18 17 15 20 20 N 1.34321 * 128.03785 * 196.59282 * 19 18 17 21 21 H 0.97002 * 126.09584 * 359.90410 * 20 19 18 22 22 N 1.40301 * 107.81965 * 179.90304 * 20 19 18 23 23 C 1.31066 * 108.26852 * 0.05002 * 22 20 19 24 24 C 1.35755 * 124.11937 * 16.56867 * 19 18 17 25 25 C 1.50838 * 124.10823 * 0.14016 * 24 19 18 26 26 H 1.09005 * 109.46813 * 59.99845 * 1 2 3 27 27 H 1.09000 * 109.47473 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46984 * 300.00616 * 1 2 3 29 29 H 1.08996 * 109.47389 * 239.99740 * 2 1 3 30 30 H 1.09005 * 109.46813 * 120.00155 * 2 1 3 31 31 H 1.09002 * 109.47081 * 144.87074 * 4 3 2 32 32 H 1.08994 * 109.46989 * 24.86825 * 4 3 2 33 33 H 0.96999 * 120.00040 * 180.02562 * 8 7 5 34 34 H 1.08995 * 109.46429 * 310.28915 * 17 15 13 35 35 H 1.08999 * 109.46242 * 70.28009 * 17 15 13 36 36 H 1.08998 * 109.68674 * 69.79699 * 18 17 15 37 37 H 1.09000 * 109.67938 * 190.34731 * 18 17 15 38 38 H 1.07998 * 125.96481 * 180.02562 * 23 22 20 39 39 H 1.08996 * 109.68409 * 256.87245 * 25 24 19 40 40 H 1.09005 * 109.68020 * 136.31359 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3291 2.0482 1.2668 5 6 1.1369 2.8530 1.7164 6 1 0.2379 2.8665 1.1181 7 6 1.1940 3.5719 2.8915 8 7 0.1538 4.2746 3.2836 9 14 2.7488 3.5479 3.9266 10 1 3.6455 4.6514 3.4983 11 1 3.4432 2.2476 3.7467 12 1 2.3936 3.7257 5.3575 13 6 2.1818 2.0381 -1.1654 14 8 1.8536 1.5136 -2.2085 15 6 2.7724 3.4246 -1.1724 16 1 3.3758 3.5668 -0.2759 17 6 3.6530 3.5977 -2.4129 18 6 4.4534 4.9006 -2.2950 19 6 3.5000 6.0143 -1.9406 20 7 3.7020 7.3387 -2.0368 21 1 4.5098 7.7720 -2.3543 22 7 2.5367 7.9839 -1.5964 23 6 1.6668 7.0678 -1.2471 24 6 2.2481 5.8188 -1.4533 25 6 1.6425 4.4612 -1.1976 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 3.1835 2.7109 1.1285 32 1 2.5682 1.2999 2.0223 33 1 0.1940 4.7807 4.1101 34 1 4.3400 2.7552 -2.4910 35 1 3.0239 3.6373 -3.3022 36 1 5.2065 4.7994 -1.5135 37 1 4.9380 5.1210 -3.2461 38 1 0.6727 7.2494 -0.8664 39 1 0.9383 4.2175 -1.9931 40 1 1.1259 4.4646 -0.2377 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270115557.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:18:50 Heat of formation + Delta-G solvation = 26.515826 kcal Electronic energy + Delta-G solvation = -22501.239711 eV Core-core repulsion = 19317.063933 eV Total energy + Delta-G solvation = -3184.175778 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.24953 -39.36989 -35.94063 -35.15805 -32.68019 -32.27065 -30.77068 -29.26392 -28.87956 -27.58477 -23.86095 -23.14056 -22.47335 -21.78130 -21.19133 -18.70290 -18.00932 -17.13286 -16.93388 -16.44392 -15.46414 -14.90384 -14.45062 -14.12075 -14.01139 -13.59400 -13.43232 -13.22560 -12.86885 -12.65740 -12.56669 -12.40323 -12.04719 -11.81318 -11.61393 -11.47311 -11.39707 -10.92164 -10.82983 -10.49972 -10.40394 -10.25418 -10.20555 -10.12180 -9.53327 -9.22984 -8.94659 -8.67564 -7.94709 -7.74395 -6.19755 -4.19858 2.10544 3.05734 3.11603 3.18177 3.24890 3.27860 3.36846 3.85545 4.27935 4.77417 4.94487 5.08673 5.09911 5.15470 5.35838 5.53790 5.62589 5.65880 5.79148 5.86057 5.89932 5.92425 5.99919 6.03624 6.22611 6.27794 6.32527 6.48035 6.49620 6.55833 6.61018 6.78356 6.88633 6.92557 7.07039 7.39172 7.45810 7.50764 7.92623 8.16158 8.42235 8.84999 8.96846 9.40150 10.92297 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013250 B = 0.008135 C = 0.005957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.734869 B = 3441.122048 C = 4699.086549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.120 3.880 3 N -0.592 5.592 4 C 0.206 3.794 5 C -0.534 4.534 6 H 0.082 0.918 7 C 0.079 3.921 8 N -0.887 5.887 9 Si 0.866 3.134 10 H -0.274 1.274 11 H -0.265 1.265 12 H -0.284 1.284 13 C 0.526 3.474 14 O -0.570 6.570 15 C -0.100 4.100 16 H 0.096 0.904 17 C -0.095 4.095 18 C -0.053 4.053 19 C 0.076 3.924 20 N -0.477 5.477 21 H 0.432 0.568 22 N -0.307 5.307 23 C 0.064 3.936 24 C -0.214 4.214 25 C -0.033 4.033 26 H 0.054 0.946 27 H 0.049 0.951 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.029 0.971 32 H 0.033 0.967 33 H 0.266 0.734 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.184 0.816 39 H 0.066 0.934 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.201 -0.435 -7.780 11.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.003 4.003 3 N -0.322 5.322 4 C 0.085 3.915 5 C -0.573 4.573 6 H 0.100 0.900 7 C -0.124 4.124 8 N -0.525 5.525 9 Si 0.692 3.308 10 H -0.200 1.200 11 H -0.190 1.190 12 H -0.210 1.210 13 C 0.315 3.685 14 O -0.451 6.451 15 C -0.121 4.121 16 H 0.114 0.886 17 C -0.134 4.134 18 C -0.092 4.092 19 C -0.053 4.053 20 N -0.185 5.185 21 H 0.275 0.725 22 N -0.129 5.129 23 C -0.121 4.121 24 C -0.225 4.225 25 C -0.072 4.072 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.047 0.953 32 H 0.051 0.949 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.201 0.799 39 H 0.085 0.915 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 8.152 0.648 -8.226 11.599 hybrid contribution 0.955 -0.390 0.887 1.361 sum 9.107 0.258 -7.338 11.699 Atomic orbital electron populations 1.22095 0.96131 1.00711 1.03302 1.21233 0.94805 0.83026 1.01217 1.48007 1.63591 1.13230 1.07347 1.19890 0.97202 0.93312 0.81122 1.21342 1.00053 1.28228 1.07637 0.89956 1.24830 0.95814 0.94724 0.97067 1.69873 1.29427 1.30049 1.23141 0.87013 0.84263 0.79088 0.80389 1.19964 1.19011 1.21015 1.20356 0.77988 0.87120 0.83045 1.90588 1.52855 1.69389 1.32262 1.21298 0.98255 0.92801 0.99722 0.88614 1.21392 0.98080 0.95314 0.98575 1.20340 0.95851 0.91287 1.01733 1.20914 0.97409 0.85528 1.01494 1.45929 1.14870 1.04043 1.53633 0.72489 1.77428 0.93098 1.20852 1.21553 1.23647 0.99560 0.90309 0.98561 1.19988 0.94918 0.96306 1.11266 1.20011 0.95672 0.87203 1.04299 0.92721 0.93162 0.91042 0.91557 0.91296 0.95298 0.94938 0.92433 0.91118 0.90588 0.89866 0.90337 0.79914 0.91529 0.87250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.87 10.22 37.16 0.38 -2.49 16 2 C 0.12 2.10 6.10 -4.05 -0.02 2.08 16 3 N -0.59 -11.66 2.47 -175.06 -0.43 -12.09 16 4 C 0.21 4.35 4.07 -5.19 -0.02 4.33 16 5 C -0.53 -13.23 8.39 -34.44 -0.29 -13.52 16 6 H 0.08 2.28 7.91 -52.49 -0.42 1.86 16 7 C 0.08 2.06 5.47 -17.82 -0.10 1.96 16 8 N -0.89 -24.87 13.96 55.43 0.77 -24.10 16 9 Si 0.87 19.45 27.47 -169.99 -4.67 14.78 16 10 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 11 H -0.27 -5.63 6.54 56.52 0.37 -5.26 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 C 0.53 10.35 6.55 -10.98 -0.07 10.28 16 14 O -0.57 -12.26 16.15 5.56 0.09 -12.17 16 15 C -0.10 -1.73 1.99 -91.53 -0.18 -1.91 16 16 H 0.10 1.71 5.72 -51.93 -0.30 1.41 16 17 C -0.10 -1.35 4.74 -26.49 -0.13 -1.47 16 18 C -0.05 -0.63 6.30 -27.63 -0.17 -0.80 16 19 C 0.08 1.11 7.08 -82.33 -0.58 0.53 16 20 N -0.48 -6.59 7.34 33.48 0.25 -6.35 16 21 H 0.43 4.35 8.96 -182.44 -1.64 2.71 16 22 N -0.31 -5.08 12.71 30.54 0.39 -4.69 16 23 C 0.06 1.09 12.00 -17.48 -0.21 0.88 16 24 C -0.21 -3.65 5.91 -105.05 -0.62 -4.27 16 25 C -0.03 -0.61 5.57 -27.63 -0.15 -0.76 16 26 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 29 H 0.07 1.12 7.58 -51.93 -0.39 0.73 16 30 H 0.07 1.09 7.82 -51.93 -0.41 0.68 16 31 H 0.03 0.60 5.30 -51.93 -0.28 0.32 16 32 H 0.03 0.68 6.86 -51.93 -0.36 0.33 16 33 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 34 H 0.07 0.93 8.10 -51.93 -0.42 0.51 16 35 H 0.08 1.14 8.11 -51.93 -0.42 0.72 16 36 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.18 2.77 8.06 -52.49 -0.42 2.35 16 39 H 0.07 1.23 8.12 -51.93 -0.42 0.81 16 40 H 0.11 2.33 6.39 -51.93 -0.33 2.00 16 LS Contribution 323.21 15.07 4.87 4.87 Total: -1.00 -30.22 323.21 -7.99 -38.20 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -7.08 Total: 6.72 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: -2.17 Total: -5.17 kcal Atomic # 7 Polarization: -48.20 SS G_CDS: 0.97 Total: -47.23 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: 0.09 Total: -12.17 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -4.67 Total: 14.78 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.22 -7.99 -38.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270115557.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.719 kcal (2) G-P(sol) polarization free energy of solvation -30.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds