Wall clock time and date at job start Mon Mar 30 2020 20:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46493 * 109.47440 * 2 1 4 4 C 1.46505 * 120.00090 * 93.18761 * 3 2 1 5 5 C 1.50704 * 109.47152 * 264.86814 * 4 3 2 6 6 H 1.07997 * 119.99518 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99652 * 179.97438 * 5 4 3 8 8 N 1.31511 * 119.99404 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 120.00320 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.46622 * 90.00202 * 9 7 5 11 11 H 1.48501 * 109.47030 * 330.00479 * 9 7 5 12 12 H 1.48497 * 109.47162 * 210.00048 * 9 7 5 13 13 C 1.34779 * 120.00058 * 273.19036 * 3 2 1 14 14 O 1.21282 * 120.00120 * 4.16356 * 13 3 2 15 15 C 1.50703 * 120.00109 * 184.16616 * 13 3 2 16 16 H 1.09000 * 109.46178 * 23.80701 * 15 13 3 17 17 C 1.53108 * 109.46284 * 143.78905 * 15 13 3 18 18 C 1.53363 * 109.50864 * 190.27752 * 17 15 13 19 19 C 1.50823 * 108.38807 * 310.06832 * 18 17 15 20 20 N 1.34321 * 128.03785 * 196.59282 * 19 18 17 21 21 H 0.97002 * 126.09584 * 359.90410 * 20 19 18 22 22 N 1.40301 * 107.81965 * 179.90304 * 20 19 18 23 23 C 1.31066 * 108.26852 * 0.05002 * 22 20 19 24 24 C 1.35755 * 124.11937 * 16.56867 * 19 18 17 25 25 C 1.50838 * 124.10823 * 0.14016 * 24 19 18 26 26 H 1.09005 * 109.46813 * 59.99845 * 1 2 3 27 27 H 1.09000 * 109.47473 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46984 * 300.00616 * 1 2 3 29 29 H 1.08996 * 109.47389 * 239.99740 * 2 1 3 30 30 H 1.09005 * 109.46813 * 120.00155 * 2 1 3 31 31 H 1.09002 * 109.47081 * 144.87074 * 4 3 2 32 32 H 1.08994 * 109.46989 * 24.86825 * 4 3 2 33 33 H 0.96999 * 120.00040 * 180.02562 * 8 7 5 34 34 H 1.08995 * 109.46429 * 310.28915 * 17 15 13 35 35 H 1.08999 * 109.46242 * 70.28009 * 17 15 13 36 36 H 1.08998 * 109.68674 * 69.79699 * 18 17 15 37 37 H 1.09000 * 109.67938 * 190.34731 * 18 17 15 38 38 H 1.07998 * 125.96481 * 180.02562 * 23 22 20 39 39 H 1.08996 * 109.68409 * 256.87245 * 25 24 19 40 40 H 1.09005 * 109.68020 * 136.31359 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3291 2.0482 1.2668 5 6 1.1369 2.8530 1.7164 6 1 0.2379 2.8665 1.1181 7 6 1.1940 3.5719 2.8915 8 7 0.1538 4.2746 3.2836 9 14 2.7488 3.5479 3.9266 10 1 3.6455 4.6514 3.4983 11 1 3.4432 2.2476 3.7467 12 1 2.3936 3.7257 5.3575 13 6 2.1818 2.0381 -1.1654 14 8 1.8536 1.5136 -2.2085 15 6 2.7724 3.4246 -1.1724 16 1 3.3758 3.5668 -0.2759 17 6 3.6530 3.5977 -2.4129 18 6 4.4534 4.9006 -2.2950 19 6 3.5000 6.0143 -1.9406 20 7 3.7020 7.3387 -2.0368 21 1 4.5098 7.7720 -2.3543 22 7 2.5367 7.9839 -1.5964 23 6 1.6668 7.0678 -1.2471 24 6 2.2481 5.8188 -1.4533 25 6 1.6425 4.4612 -1.1976 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 3.1835 2.7109 1.1285 32 1 2.5682 1.2999 2.0223 33 1 0.1940 4.7807 4.1101 34 1 4.3400 2.7552 -2.4910 35 1 3.0239 3.6373 -3.3022 36 1 5.2065 4.7994 -1.5135 37 1 4.9380 5.1210 -3.2461 38 1 0.6727 7.2494 -0.8664 39 1 0.9383 4.2175 -1.9931 40 1 1.1259 4.4646 -0.2377 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270115557.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:18:49 Heat of formation + Delta-G solvation = 7.342508 kcal Electronic energy + Delta-G solvation = -22502.071128 eV Core-core repulsion = 19317.063933 eV Total energy + Delta-G solvation = -3185.007195 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.49346 -40.89964 -37.28025 -36.75721 -34.56299 -33.54159 -32.28581 -30.50743 -30.23913 -29.35268 -25.28897 -24.46037 -24.23284 -23.05463 -22.50281 -20.04384 -19.49108 -18.89158 -18.32927 -17.98277 -16.99587 -16.35053 -15.92256 -15.68498 -15.30835 -15.00369 -14.69934 -14.62902 -14.57328 -14.16036 -13.93694 -13.83087 -13.56134 -13.40795 -12.97744 -12.88540 -12.76266 -12.53132 -12.49006 -11.95737 -11.84979 -11.73305 -11.62567 -11.56458 -11.36954 -10.71703 -10.46077 -10.42397 -9.39236 -9.22337 -8.20368 -6.24147 0.90415 1.42068 1.43704 1.51662 1.73235 1.83125 1.99453 2.36909 2.39874 3.13881 3.60512 3.71377 3.86017 3.96845 4.06556 4.25638 4.31117 4.42124 4.46587 4.56165 4.59345 4.65172 4.76078 4.79018 4.86699 4.91780 4.93974 5.01699 5.07625 5.11349 5.22810 5.38300 5.41845 5.45024 5.53458 5.68724 5.82029 6.29679 6.45825 6.67217 6.71781 6.81652 7.33443 7.44003 8.95123 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013250 B = 0.008135 C = 0.005957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.734869 B = 3441.122048 C = 4699.086549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.113 3.887 3 N -0.597 5.597 4 C 0.212 3.788 5 C -0.521 4.521 6 H 0.036 0.964 7 C 0.023 3.977 8 N -0.940 5.940 9 Si 0.929 3.071 10 H -0.269 1.269 11 H -0.235 1.235 12 H -0.292 1.292 13 C 0.521 3.479 14 O -0.590 6.590 15 C -0.097 4.097 16 H 0.095 0.905 17 C -0.090 4.090 18 C -0.046 4.046 19 C 0.096 3.904 20 N -0.459 5.459 21 H 0.451 0.549 22 N -0.325 5.325 23 C 0.048 3.952 24 C -0.251 4.251 25 C -0.020 4.020 26 H 0.030 0.970 27 H 0.083 0.917 28 H 0.042 0.958 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.046 0.954 32 H 0.047 0.953 33 H 0.264 0.736 34 H 0.088 0.912 35 H 0.065 0.935 36 H 0.107 0.893 37 H 0.118 0.882 38 H 0.184 0.816 39 H 0.050 0.950 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.867 -1.247 -8.333 14.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.009 4.009 3 N -0.327 5.327 4 C 0.091 3.909 5 C -0.559 4.559 6 H 0.055 0.945 7 C -0.176 4.176 8 N -0.580 5.580 9 Si 0.753 3.247 10 H -0.194 1.194 11 H -0.158 1.158 12 H -0.218 1.218 13 C 0.311 3.689 14 O -0.473 6.473 15 C -0.118 4.118 16 H 0.113 0.887 17 C -0.128 4.128 18 C -0.085 4.085 19 C -0.035 4.035 20 N -0.169 5.169 21 H 0.298 0.702 22 N -0.148 5.148 23 C -0.136 4.136 24 C -0.262 4.262 25 C -0.059 4.059 26 H 0.049 0.951 27 H 0.102 0.898 28 H 0.062 0.938 29 H 0.095 0.905 30 H 0.111 0.889 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.107 0.893 35 H 0.084 0.916 36 H 0.125 0.875 37 H 0.136 0.864 38 H 0.201 0.799 39 H 0.069 0.931 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 11.841 -0.170 -8.801 14.755 hybrid contribution -0.284 -0.159 0.974 1.027 sum 11.557 -0.329 -7.827 13.962 Atomic orbital electron populations 1.22001 0.96628 1.02081 1.00652 1.21460 0.94370 0.82218 1.02866 1.48100 1.63566 1.14117 1.06891 1.19752 0.95755 0.93446 0.81993 1.21416 0.99807 1.28020 1.06669 0.94530 1.25643 0.99003 0.94425 0.98535 1.70042 1.32149 1.31888 1.23881 0.85993 0.80319 0.80521 0.77885 1.19449 1.15822 1.21777 1.20807 0.77582 0.87819 0.82702 1.90569 1.53774 1.70053 1.32859 1.21324 0.98078 0.90775 1.01625 0.88682 1.21375 0.97843 0.97526 0.96075 1.20497 0.95051 0.88302 1.04628 1.21300 0.96742 0.86440 0.99034 1.45927 1.14835 1.03804 1.52316 0.70176 1.77374 0.93960 1.21152 1.22352 1.23782 1.00082 0.90707 0.99056 1.19967 0.96663 0.95422 1.14161 1.19685 0.95799 0.89031 1.01383 0.95067 0.89792 0.93840 0.90523 0.88917 0.93677 0.93466 0.92717 0.89330 0.91644 0.87481 0.86359 0.79910 0.93100 0.91412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.44 10.22 71.98 0.74 -4.71 16 2 C 0.11 3.80 6.10 86.38 0.53 4.33 16 3 N -0.60 -23.07 2.47 -826.15 -2.04 -25.11 16 4 C 0.21 8.69 4.07 85.63 0.35 9.04 16 5 C -0.52 -26.45 8.39 25.60 0.21 -26.24 16 6 H 0.04 2.16 7.91 -2.91 -0.02 2.14 16 7 C 0.02 1.20 5.47 84.66 0.46 1.66 16 8 N -0.94 -54.91 13.96 21.45 0.30 -54.61 16 9 Si 0.93 39.37 27.47 68.60 1.88 41.25 16 10 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 11 H -0.24 -8.77 6.54 99.48 0.65 -8.12 16 12 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 13 C 0.52 20.30 6.55 87.66 0.57 20.88 16 14 O -0.59 -25.22 16.15 -3.04 -0.05 -25.27 16 15 C -0.10 -3.29 1.99 -11.38 -0.02 -3.31 16 16 H 0.10 3.22 5.72 -2.39 -0.01 3.21 16 17 C -0.09 -2.30 4.74 30.75 0.15 -2.15 16 18 C -0.05 -0.89 6.30 30.01 0.19 -0.70 16 19 C 0.10 2.58 7.08 41.64 0.29 2.87 16 20 N -0.46 -11.52 7.34 -47.99 -0.35 -11.87 16 21 H 0.45 7.46 8.96 -213.19 -1.91 5.55 16 22 N -0.33 -10.54 12.71 -57.28 -0.73 -11.27 16 23 C 0.05 1.67 12.00 85.06 1.02 2.69 16 24 C -0.25 -8.60 5.91 -20.14 -0.12 -8.72 16 25 C -0.02 -0.77 5.57 30.01 0.17 -0.60 16 26 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 27 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 28 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.08 2.44 7.58 -2.39 -0.02 2.42 16 30 H 0.09 2.67 7.82 -2.38 -0.02 2.65 16 31 H 0.05 1.74 5.30 -2.39 -0.01 1.73 16 32 H 0.05 1.83 6.86 -2.39 -0.02 1.82 16 33 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 34 H 0.09 2.00 8.10 -2.39 -0.02 1.98 16 35 H 0.06 1.83 8.11 -2.39 -0.02 1.81 16 36 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.18 5.99 8.06 -2.91 -0.02 5.97 16 39 H 0.05 2.02 8.12 -2.39 -0.02 2.00 16 40 H 0.07 3.12 6.39 -2.38 -0.02 3.10 16 Total: -1.00 -68.43 323.21 2.64 -65.79 By element: Atomic # 1 Polarization: 26.95 SS G_CDS: -0.91 Total: 26.04 kcal Atomic # 6 Polarization: -9.50 SS G_CDS: 4.54 Total: -4.96 kcal Atomic # 7 Polarization: -100.03 SS G_CDS: -2.82 Total: -102.85 kcal Atomic # 8 Polarization: -25.22 SS G_CDS: -0.05 Total: -25.27 kcal Atomic # 14 Polarization: 39.37 SS G_CDS: 1.88 Total: 41.25 kcal Total: -68.43 2.64 -65.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270115557.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.136 kcal (2) G-P(sol) polarization free energy of solvation -68.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds