Wall clock time and date at job start Mon Mar 30 2020 20:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46495 * 109.47455 * 2 1 4 4 C 1.46510 * 119.99981 * 264.86736 * 3 2 1 5 5 C 1.50704 * 109.46767 * 275.67541 * 4 3 2 6 6 H 1.08004 * 119.99991 * 359.97438 * 5 4 3 7 7 C 1.37877 * 119.99676 * 179.97438 * 5 4 3 8 8 N 1.31513 * 119.99857 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 120.00278 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.47138 * 89.99684 * 9 7 5 11 11 H 1.48497 * 109.47128 * 209.99952 * 9 7 5 12 12 H 1.48500 * 109.46847 * 329.99716 * 9 7 5 13 13 C 1.34780 * 120.00445 * 84.86196 * 3 2 1 14 14 O 1.21283 * 119.99349 * 4.95355 * 13 3 2 15 15 C 1.50696 * 120.00206 * 184.95246 * 13 3 2 16 16 H 1.08994 * 109.46412 * 307.47149 * 15 13 3 17 17 C 1.53112 * 109.45397 * 187.49992 * 15 13 3 18 18 C 1.53369 * 109.51099 * 169.72462 * 17 15 13 19 19 C 1.50826 * 108.38192 * 49.94056 * 18 17 15 20 20 N 1.34320 * 128.03345 * 163.42339 * 19 18 17 21 21 H 0.96995 * 126.09544 * 0.09966 * 20 19 18 22 22 N 1.40300 * 107.81717 * 180.10113 * 20 19 18 23 23 C 1.31074 * 108.26774 * 359.93304 * 22 20 19 24 24 C 1.35754 * 124.11980 * 343.41615 * 19 18 17 25 25 C 1.50839 * 124.10827 * 359.87097 * 24 19 18 26 26 H 1.09000 * 109.46958 * 300.00435 * 1 2 3 27 27 H 1.09002 * 109.47416 * 60.00000 * 1 2 3 28 28 H 1.08997 * 109.47468 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47382 * 240.00085 * 2 1 3 30 30 H 1.09002 * 109.47416 * 120.00000 * 2 1 3 31 31 H 1.08996 * 109.46876 * 35.67463 * 4 3 2 32 32 H 1.09003 * 109.47128 * 155.68021 * 4 3 2 33 33 H 0.96994 * 120.00022 * 180.02562 * 8 7 5 34 34 H 1.09010 * 109.46263 * 289.73260 * 17 15 13 35 35 H 1.09000 * 109.46632 * 49.71835 * 17 15 13 36 36 H 1.09000 * 109.68224 * 169.66654 * 18 17 15 37 37 H 1.09000 * 109.67602 * 290.18279 * 18 17 15 38 38 H 1.07999 * 125.95787 * 180.02562 * 23 22 20 39 39 H 1.09000 * 109.67623 * 223.68165 * 25 24 19 40 40 H 1.09005 * 109.68454 * 103.13158 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.3696 2.0339 -1.2637 5 6 3.7830 1.6714 -1.6404 6 1 4.3619 1.0203 -1.0022 7 6 4.3371 2.1710 -2.7999 8 7 5.5707 1.8551 -3.1284 9 14 3.3361 3.2977 -3.9035 10 1 3.5448 4.7087 -3.4901 11 1 3.7717 3.1252 -5.3126 12 1 1.8961 2.9550 -3.7850 13 6 2.1445 2.0514 1.1625 14 8 1.9401 1.4840 2.2148 15 6 2.5395 3.5057 1.1548 16 1 3.4480 3.6321 0.5661 17 6 2.7929 3.9729 2.5907 18 6 3.4379 5.3642 2.5703 19 6 2.6199 6.2545 1.6685 20 7 2.6332 7.5957 1.5964 21 1 3.1855 8.1910 2.1269 22 7 1.7058 7.9822 0.6172 23 6 1.1579 6.9000 0.1204 24 6 1.7162 5.7982 0.7641 25 6 1.4100 4.3388 0.5368 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6881 1.7007 -2.0464 32 1 2.2901 3.1149 -1.1486 33 1 5.9606 2.2068 -3.9439 34 1 1.8466 4.0191 3.1299 35 1 3.4609 3.2702 3.0887 36 1 3.4521 5.7770 3.5790 37 1 4.4564 5.2910 2.1892 38 1 0.4052 6.8683 -0.6535 39 1 1.3493 4.1388 -0.5330 40 1 0.4631 4.0839 1.0128 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270115559.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:18:53 Heat of formation + Delta-G solvation = 28.468689 kcal Electronic energy + Delta-G solvation = -22367.935969 eV Core-core repulsion = 19183.844873 eV Total energy + Delta-G solvation = -3184.091096 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.44585 -39.44653 -36.00110 -35.25293 -32.72952 -32.51280 -30.87783 -29.40734 -29.02420 -27.57325 -23.97344 -23.32838 -22.54859 -21.90800 -21.24841 -18.74832 -18.20716 -17.22971 -16.96353 -16.46312 -15.54474 -15.01953 -14.61900 -14.29805 -14.21463 -13.70343 -13.52917 -13.41819 -12.96773 -12.90280 -12.68208 -12.44599 -12.12786 -11.88062 -11.64025 -11.53315 -11.36893 -10.93358 -10.74425 -10.66914 -10.55742 -10.38791 -10.32281 -10.22503 -9.59905 -9.42076 -9.00913 -8.70897 -8.15737 -7.72671 -6.21408 -4.22579 1.94241 2.88193 2.89992 3.19076 3.25504 3.28133 3.33650 3.83477 4.27172 4.67587 4.82217 4.92422 5.04089 5.10132 5.27693 5.34666 5.52945 5.58646 5.65649 5.74764 5.79049 5.81492 5.84109 5.95513 6.00109 6.10733 6.24264 6.33621 6.37082 6.41832 6.54860 6.57751 6.61602 6.73086 6.80274 7.33575 7.37628 7.46686 7.72961 8.14022 8.43541 8.82660 8.93941 9.38323 10.91312 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.012842 B = 0.007779 C = 0.005845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.817224 B = 3598.380743 C = 4789.357266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.115 3.885 3 N -0.588 5.588 4 C 0.197 3.803 5 C -0.540 4.540 6 H 0.078 0.922 7 C 0.077 3.923 8 N -0.892 5.892 9 Si 0.867 3.133 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.262 1.262 13 C 0.525 3.475 14 O -0.570 6.570 15 C -0.107 4.107 16 H 0.110 0.890 17 C -0.089 4.089 18 C -0.058 4.058 19 C 0.091 3.909 20 N -0.473 5.473 21 H 0.435 0.565 22 N -0.305 5.305 23 C 0.059 3.941 24 C -0.230 4.230 25 C -0.036 4.036 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.031 0.969 32 H 0.045 0.955 33 H 0.266 0.734 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.182 0.818 39 H 0.087 0.913 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.544 6.697 7.718 12.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.008 4.008 3 N -0.318 5.318 4 C 0.076 3.924 5 C -0.579 4.579 6 H 0.096 0.904 7 C -0.127 4.127 8 N -0.529 5.529 9 Si 0.693 3.307 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.187 1.187 13 C 0.313 3.687 14 O -0.451 6.451 15 C -0.128 4.128 16 H 0.128 0.872 17 C -0.128 4.128 18 C -0.097 4.097 19 C -0.038 4.038 20 N -0.181 5.181 21 H 0.278 0.722 22 N -0.127 5.127 23 C -0.126 4.126 24 C -0.241 4.241 25 C -0.074 4.074 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.049 0.951 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.107 0.893 38 H 0.199 0.801 39 H 0.105 0.895 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.493 7.688 8.017 13.398 hybrid contribution 0.013 0.089 -0.710 0.716 sum -7.480 7.777 7.306 13.031 Atomic orbital electron populations 1.22119 0.96930 1.01351 1.01781 1.21242 0.93117 0.83656 1.02834 1.47919 1.62920 1.13290 1.07653 1.20088 0.96932 0.93982 0.81354 1.21389 0.96702 1.31618 1.08169 0.90439 1.24867 0.94737 0.95874 0.97209 1.69889 1.13639 1.44457 1.24944 0.86980 0.81208 0.81864 0.80621 1.19633 1.20930 1.18691 1.20337 0.76491 0.88593 0.83303 1.90587 1.52996 1.70309 1.31216 1.21333 1.01331 0.91940 0.98204 0.87201 1.21315 1.01728 0.93882 0.95842 1.20441 0.98366 0.93752 0.97166 1.21023 0.99077 0.84597 0.99151 1.45970 1.34359 1.05064 1.32666 0.72174 1.77438 1.06767 1.22981 1.05524 1.23582 0.99751 0.89563 0.99686 1.19880 1.04537 0.96418 1.03276 1.20120 0.97203 0.88325 1.01760 0.92764 0.92786 0.92323 0.90126 0.91109 0.95132 0.93766 0.92404 0.91108 0.90075 0.90131 0.89276 0.80109 0.89466 0.91173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.44 10.20 37.15 0.38 -2.06 16 2 C 0.11 2.05 6.13 -4.05 -0.02 2.03 16 3 N -0.59 -11.70 2.47 -175.05 -0.43 -12.13 16 4 C 0.20 4.24 3.81 -5.19 -0.02 4.22 16 5 C -0.54 -14.07 9.93 -34.44 -0.34 -14.41 16 6 H 0.08 2.27 8.06 -52.48 -0.42 1.85 16 7 C 0.08 2.06 5.47 -17.82 -0.10 1.96 16 8 N -0.89 -25.82 13.96 55.43 0.77 -25.05 16 9 Si 0.87 19.69 27.47 -169.99 -4.67 15.02 16 10 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 12 H -0.26 -5.56 6.54 56.52 0.37 -5.19 16 13 C 0.52 10.23 6.90 -10.99 -0.08 10.16 16 14 O -0.57 -12.11 15.54 5.55 0.09 -12.03 16 15 C -0.11 -1.80 1.65 -91.53 -0.15 -1.95 16 16 H 0.11 2.05 7.60 -51.93 -0.39 1.66 16 17 C -0.09 -1.26 4.58 -26.48 -0.12 -1.39 16 18 C -0.06 -0.68 6.30 -27.63 -0.17 -0.85 16 19 C 0.09 1.23 7.08 -82.33 -0.58 0.65 16 20 N -0.47 -5.97 7.34 33.48 0.25 -5.73 16 21 H 0.44 3.97 8.96 -182.45 -1.64 2.34 16 22 N -0.30 -4.51 12.71 30.54 0.39 -4.12 16 23 C 0.06 0.85 12.00 -17.48 -0.21 0.64 16 24 C -0.23 -3.42 5.91 -105.05 -0.62 -4.04 16 25 C -0.04 -0.55 5.20 -27.63 -0.14 -0.69 16 26 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.08 1.45 8.03 -51.93 -0.42 1.03 16 30 H 0.07 1.30 7.52 -51.93 -0.39 0.91 16 31 H 0.03 0.65 7.17 -51.93 -0.37 0.28 16 32 H 0.04 0.91 3.32 -51.93 -0.17 0.74 16 33 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 34 H 0.07 1.00 8.11 -51.92 -0.42 0.58 16 35 H 0.08 1.18 7.88 -51.93 -0.41 0.78 16 36 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 38 H 0.18 2.08 8.06 -52.49 -0.42 1.66 16 39 H 0.09 1.40 5.55 -51.93 -0.29 1.11 16 40 H 0.07 1.03 8.12 -51.93 -0.42 0.61 16 LS Contribution 322.82 15.07 4.86 4.86 Total: -1.00 -31.53 322.82 -7.98 -39.50 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -7.05 Total: 5.40 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: -2.18 Total: -5.74 kcal Atomic # 7 Polarization: -48.00 SS G_CDS: 0.98 Total: -47.02 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: 0.09 Total: -12.03 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -4.67 Total: 15.02 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.53 -7.98 -39.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270115559.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.974 kcal (2) G-P(sol) polarization free energy of solvation -31.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds