Wall clock time and date at job start Mon Mar 30 2020 20:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46495 * 109.47455 * 2 1 4 4 C 1.46510 * 119.99981 * 264.86736 * 3 2 1 5 5 C 1.50704 * 109.46767 * 275.67541 * 4 3 2 6 6 H 1.08004 * 119.99991 * 359.97438 * 5 4 3 7 7 C 1.37877 * 119.99676 * 179.97438 * 5 4 3 8 8 N 1.31513 * 119.99857 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 120.00278 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.47138 * 89.99684 * 9 7 5 11 11 H 1.48497 * 109.47128 * 209.99952 * 9 7 5 12 12 H 1.48500 * 109.46847 * 329.99716 * 9 7 5 13 13 C 1.34780 * 120.00445 * 84.86196 * 3 2 1 14 14 O 1.21283 * 119.99349 * 4.95355 * 13 3 2 15 15 C 1.50696 * 120.00206 * 184.95246 * 13 3 2 16 16 H 1.08994 * 109.46412 * 307.47149 * 15 13 3 17 17 C 1.53112 * 109.45397 * 187.49992 * 15 13 3 18 18 C 1.53369 * 109.51099 * 169.72462 * 17 15 13 19 19 C 1.50826 * 108.38192 * 49.94056 * 18 17 15 20 20 N 1.34320 * 128.03345 * 163.42339 * 19 18 17 21 21 H 0.96995 * 126.09544 * 0.09966 * 20 19 18 22 22 N 1.40300 * 107.81717 * 180.10113 * 20 19 18 23 23 C 1.31074 * 108.26774 * 359.93304 * 22 20 19 24 24 C 1.35754 * 124.11980 * 343.41615 * 19 18 17 25 25 C 1.50839 * 124.10827 * 359.87097 * 24 19 18 26 26 H 1.09000 * 109.46958 * 300.00435 * 1 2 3 27 27 H 1.09002 * 109.47416 * 60.00000 * 1 2 3 28 28 H 1.08997 * 109.47468 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47382 * 240.00085 * 2 1 3 30 30 H 1.09002 * 109.47416 * 120.00000 * 2 1 3 31 31 H 1.08996 * 109.46876 * 35.67463 * 4 3 2 32 32 H 1.09003 * 109.47128 * 155.68021 * 4 3 2 33 33 H 0.96994 * 120.00022 * 180.02562 * 8 7 5 34 34 H 1.09010 * 109.46263 * 289.73260 * 17 15 13 35 35 H 1.09000 * 109.46632 * 49.71835 * 17 15 13 36 36 H 1.09000 * 109.68224 * 169.66654 * 18 17 15 37 37 H 1.09000 * 109.67602 * 290.18279 * 18 17 15 38 38 H 1.07999 * 125.95787 * 180.02562 * 23 22 20 39 39 H 1.09000 * 109.67623 * 223.68165 * 25 24 19 40 40 H 1.09005 * 109.68454 * 103.13158 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.3696 2.0339 -1.2637 5 6 3.7830 1.6714 -1.6404 6 1 4.3619 1.0203 -1.0022 7 6 4.3371 2.1710 -2.7999 8 7 5.5707 1.8551 -3.1284 9 14 3.3361 3.2977 -3.9035 10 1 3.5448 4.7087 -3.4901 11 1 3.7717 3.1252 -5.3126 12 1 1.8961 2.9550 -3.7850 13 6 2.1445 2.0514 1.1625 14 8 1.9401 1.4840 2.2148 15 6 2.5395 3.5057 1.1548 16 1 3.4480 3.6321 0.5661 17 6 2.7929 3.9729 2.5907 18 6 3.4379 5.3642 2.5703 19 6 2.6199 6.2545 1.6685 20 7 2.6332 7.5957 1.5964 21 1 3.1855 8.1910 2.1269 22 7 1.7058 7.9822 0.6172 23 6 1.1579 6.9000 0.1204 24 6 1.7162 5.7982 0.7641 25 6 1.4100 4.3388 0.5368 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6881 1.7007 -2.0464 32 1 2.2901 3.1149 -1.1486 33 1 5.9606 2.2068 -3.9439 34 1 1.8466 4.0191 3.1299 35 1 3.4609 3.2702 3.0887 36 1 3.4521 5.7770 3.5790 37 1 4.4564 5.2910 2.1892 38 1 0.4052 6.8683 -0.6535 39 1 1.3493 4.1388 -0.5330 40 1 0.4631 4.0839 1.0128 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270115559.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:18:53 Heat of formation + Delta-G solvation = 8.355704 kcal Electronic energy + Delta-G solvation = -22368.808133 eV Core-core repulsion = 19183.844873 eV Total energy + Delta-G solvation = -3184.963260 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.52121 -40.94291 -37.26751 -36.85670 -34.65624 -33.63838 -32.29476 -30.51136 -30.31228 -29.31655 -25.26872 -24.63779 -24.24098 -23.03203 -22.46431 -19.97587 -19.59571 -19.02105 -18.31476 -17.97594 -17.04793 -16.30774 -16.26614 -15.69369 -15.33959 -14.94498 -14.87045 -14.69184 -14.63184 -14.17298 -14.03329 -13.79557 -13.45825 -13.31818 -13.16506 -12.82972 -12.71289 -12.48235 -12.36495 -12.03612 -11.87534 -11.76654 -11.74211 -11.63033 -11.46228 -10.78206 -10.53158 -10.44327 -9.38546 -9.23868 -8.28929 -6.35390 0.90768 1.41708 1.42304 1.51368 1.75217 1.82422 1.96975 2.33741 2.35747 3.05784 3.56754 3.64432 3.83169 3.91031 4.09004 4.18947 4.28549 4.43117 4.45155 4.54418 4.57850 4.59988 4.66748 4.73374 4.84253 4.86590 4.95225 4.96935 5.06528 5.09089 5.20067 5.31648 5.35568 5.37996 5.49754 5.69494 5.79517 6.20099 6.42719 6.66188 6.71409 6.73135 7.25965 7.39015 8.87473 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.012842 B = 0.007779 C = 0.005845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.817224 B = 3598.380743 C = 4789.357266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.107 3.893 3 N -0.595 5.595 4 C 0.208 3.792 5 C -0.540 4.540 6 H 0.028 0.972 7 C 0.019 3.981 8 N -0.944 5.944 9 Si 0.934 3.066 10 H -0.264 1.264 11 H -0.287 1.287 12 H -0.231 1.231 13 C 0.519 3.481 14 O -0.590 6.590 15 C -0.104 4.104 16 H 0.088 0.912 17 C -0.085 4.085 18 C -0.051 4.051 19 C 0.094 3.906 20 N -0.463 5.463 21 H 0.449 0.551 22 N -0.326 5.326 23 C 0.055 3.945 24 C -0.255 4.255 25 C -0.026 4.026 26 H 0.046 0.954 27 H 0.061 0.939 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.059 0.941 31 H 0.043 0.957 32 H 0.062 0.938 33 H 0.267 0.733 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.115 0.885 37 H 0.094 0.906 38 H 0.203 0.797 39 H 0.081 0.919 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.414 8.338 7.780 14.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.016 4.016 3 N -0.325 5.325 4 C 0.086 3.914 5 C -0.579 4.579 6 H 0.046 0.954 7 C -0.179 4.179 8 N -0.584 5.584 9 Si 0.757 3.243 10 H -0.189 1.189 11 H -0.213 1.213 12 H -0.154 1.154 13 C 0.308 3.692 14 O -0.472 6.472 15 C -0.126 4.126 16 H 0.106 0.894 17 C -0.123 4.123 18 C -0.090 4.090 19 C -0.037 4.037 20 N -0.172 5.172 21 H 0.296 0.704 22 N -0.149 5.149 23 C -0.130 4.130 24 C -0.267 4.267 25 C -0.064 4.064 26 H 0.065 0.935 27 H 0.080 0.920 28 H 0.102 0.898 29 H 0.093 0.907 30 H 0.078 0.922 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.133 0.867 37 H 0.112 0.888 38 H 0.220 0.780 39 H 0.099 0.901 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.379 9.334 8.105 15.517 hybrid contribution 0.685 -0.526 -0.637 1.073 sum -8.693 8.809 7.469 14.455 Atomic orbital electron populations 1.22004 0.94046 1.03070 1.01732 1.21396 0.95463 0.82704 1.02020 1.48018 1.63019 1.14048 1.07370 1.19913 0.94101 0.95066 0.82283 1.21565 0.98583 1.30336 1.07379 0.95403 1.25767 0.95713 0.97581 0.98871 1.70054 1.15945 1.46512 1.25856 0.85904 0.81083 0.79575 0.77782 1.18858 1.21306 1.15403 1.20857 0.75839 0.89685 0.82799 1.90567 1.53888 1.71044 1.31716 1.21342 1.00869 0.90458 0.99894 0.89400 1.21274 1.01944 0.95247 0.93870 1.20451 0.97800 0.91856 0.98853 1.21240 0.98565 0.85087 0.98768 1.45982 1.33963 1.05024 1.32243 0.70430 1.77402 1.07596 1.23523 1.06404 1.23968 0.99996 0.89077 0.99970 1.19958 1.05968 0.96142 1.04598 1.19976 0.96702 0.88626 1.01093 0.93471 0.92003 0.89781 0.90701 0.92223 0.93893 0.92010 0.92388 0.90849 0.90890 0.86693 0.88809 0.77999 0.90110 0.90499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.20 10.20 71.98 0.73 -3.47 16 2 C 0.11 3.80 6.13 86.38 0.53 4.33 16 3 N -0.60 -23.58 2.47 -826.13 -2.04 -25.62 16 4 C 0.21 8.75 3.81 85.63 0.33 9.07 16 5 C -0.54 -28.70 9.93 25.60 0.25 -28.44 16 6 H 0.03 1.71 8.06 -2.91 -0.02 1.69 16 7 C 0.02 1.05 5.47 84.65 0.46 1.51 16 8 N -0.94 -56.17 13.96 21.45 0.30 -55.87 16 9 Si 0.93 39.74 27.47 68.60 1.88 41.63 16 10 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 11 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16 12 H -0.23 -8.63 6.54 99.48 0.65 -7.98 16 13 C 0.52 20.20 6.90 87.66 0.60 20.81 16 14 O -0.59 -25.09 15.54 -3.04 -0.05 -25.14 16 15 C -0.10 -3.45 1.65 -11.39 -0.02 -3.47 16 16 H 0.09 3.30 7.60 -2.39 -0.02 3.28 16 17 C -0.08 -2.30 4.58 30.76 0.14 -2.16 16 18 C -0.05 -1.06 6.30 30.01 0.19 -0.87 16 19 C 0.09 2.33 7.08 41.64 0.29 2.62 16 20 N -0.46 -10.52 7.34 -47.99 -0.35 -10.87 16 21 H 0.45 6.99 8.96 -213.20 -1.91 5.08 16 22 N -0.33 -8.91 12.71 -57.28 -0.73 -9.64 16 23 C 0.05 1.43 12.00 85.06 1.02 2.45 16 24 C -0.26 -7.06 5.91 -20.14 -0.12 -7.18 16 25 C -0.03 -0.75 5.20 30.01 0.16 -0.59 16 26 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.07 2.70 8.03 -2.38 -0.02 2.68 16 30 H 0.06 2.23 7.52 -2.39 -0.02 2.21 16 31 H 0.04 1.73 7.17 -2.39 -0.02 1.71 16 32 H 0.06 2.43 3.32 -2.39 -0.01 2.43 16 33 H 0.27 14.90 8.31 -92.71 -0.77 14.12 16 34 H 0.07 1.95 8.11 -2.38 -0.02 1.94 16 35 H 0.07 2.09 7.88 -2.39 -0.02 2.07 16 36 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.09 1.92 8.14 -2.39 -0.02 1.91 16 38 H 0.20 4.11 8.06 -2.91 -0.02 4.09 16 39 H 0.08 2.42 5.55 -2.39 -0.01 2.40 16 40 H 0.08 2.11 8.12 -2.38 -0.02 2.09 16 Total: -1.00 -69.20 322.82 2.68 -66.52 By element: Atomic # 1 Polarization: 25.29 SS G_CDS: -0.91 Total: 24.38 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: 4.58 Total: -5.38 kcal Atomic # 7 Polarization: -99.18 SS G_CDS: -2.82 Total: -102.00 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: -0.05 Total: -25.14 kcal Atomic # 14 Polarization: 39.74 SS G_CDS: 1.88 Total: 41.63 kcal Total: -69.20 2.68 -66.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270115559.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.879 kcal (2) G-P(sol) polarization free energy of solvation -69.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds