Wall clock time and date at job start Mon Mar 30 2020 20:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46498 * 109.47055 * 2 1 4 4 C 1.46498 * 119.99989 * 269.99936 * 3 2 1 5 5 C 1.50695 * 109.47605 * 269.99931 * 4 3 2 6 6 H 1.08001 * 120.00104 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00294 * 179.97438 * 5 4 3 8 8 N 1.31510 * 120.00161 * 0.02562 * 7 5 4 9 9 Si 1.86809 * 120.00061 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46945 * 60.00051 * 9 7 5 11 11 H 1.48503 * 109.46981 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46966 * 300.00071 * 9 7 5 13 13 C 1.34779 * 120.00005 * 90.00222 * 3 2 1 14 14 O 1.21279 * 119.99914 * 179.97438 * 13 3 2 15 15 C 1.50697 * 119.99873 * 0.02562 * 13 3 2 16 16 N 1.46899 * 109.47146 * 179.97438 * 15 13 3 17 17 C 1.46833 * 111.00088 * 293.95474 * 16 15 13 18 18 C 1.50185 * 110.23866 * 287.80928 * 17 16 15 19 19 C 1.31990 * 122.98920 * 343.19879 * 18 17 16 20 20 C 1.43199 * 118.69422 * 180.02562 * 19 18 17 21 21 N 6.89786 * 124.49722 * 107.23473 * 2 1 3 22 22 C 1.50338 * 122.61323 * 359.77761 * 19 18 17 23 23 C 1.47211 * 110.99970 * 170.91936 * 16 15 13 24 24 H 1.08998 * 109.47291 * 59.99880 * 1 2 3 25 25 H 1.09005 * 109.47392 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47255 * 299.99363 * 1 2 3 27 27 H 1.09008 * 109.47008 * 240.00117 * 2 1 3 28 28 H 1.09001 * 109.47801 * 120.00183 * 2 1 3 29 29 H 1.09004 * 109.47447 * 30.00404 * 4 3 2 30 30 H 1.09001 * 109.47148 * 150.00306 * 4 3 2 31 31 H 0.96997 * 120.00434 * 180.02562 * 8 7 5 32 32 H 1.08999 * 109.47431 * 59.99895 * 15 13 3 33 33 H 1.08998 * 109.46791 * 299.99486 * 15 13 3 34 34 H 1.08997 * 109.34431 * 167.57987 * 17 16 15 35 35 H 1.08992 * 109.21502 * 47.96547 * 17 16 15 36 36 H 1.08002 * 118.50103 * 162.91124 * 18 17 16 37 37 H 1.09000 * 109.57520 * 223.74711 * 22 19 18 38 38 H 1.08999 * 109.23130 * 103.92633 * 22 19 18 39 39 H 1.09007 * 109.62334 * 173.72078 * 23 16 15 40 40 H 1.08994 * 109.62511 * 294.08902 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2624 2.0718 -1.2687 5 6 3.6856 1.8351 -1.7038 6 1 4.3426 1.2303 -1.0963 7 6 4.1489 2.3897 -2.8780 8 7 3.3489 3.1257 -3.6181 9 14 5.9130 2.0956 -3.4177 10 1 6.1401 0.6389 -3.5949 11 1 6.1604 2.7958 -4.7037 12 1 6.8409 2.6190 -2.3831 13 6 2.2429 2.0165 1.1672 14 8 2.6476 3.1598 1.1672 15 6 1.9923 1.3059 2.4723 16 7 2.3110 2.2057 3.5889 17 6 3.7471 2.5094 3.6266 18 6 4.5202 1.3080 4.0897 19 6 3.9578 0.2852 4.7059 20 6 4.7832 -0.8135 5.1086 21 7 5.4366 -1.6844 5.4296 22 6 2.4858 0.2303 5.0068 23 6 1.8775 1.6285 4.8718 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5137 0.8900 27 1 1.8933 -0.5139 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 1.5816 1.6877 -2.0284 30 1 2.0955 3.1410 -1.1384 31 1 3.6747 3.5156 -4.4444 32 1 2.6229 0.4187 2.5298 33 1 0.9445 1.0114 2.5302 34 1 3.9230 3.3381 4.3124 35 1 4.0807 2.7903 2.6277 36 1 5.5841 1.2775 3.9061 37 1 2.3341 -0.1347 6.0226 38 1 2.0005 -0.4458 4.3030 39 1 2.2223 2.2585 5.6918 40 1 0.7899 1.5614 4.8942 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272598884.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:19:04 Heat of formation + Delta-G solvation = 20.714459 kcal Electronic energy + Delta-G solvation = -21870.401940 eV Core-core repulsion = 18685.974596 eV Total energy + Delta-G solvation = -3184.427344 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.29262 -38.49823 -36.67457 -35.26883 -33.11337 -32.70791 -31.16903 -30.10906 -28.85052 -26.64859 -24.44732 -23.42705 -23.01805 -22.34674 -20.01082 -18.38997 -17.24851 -16.76797 -16.38977 -15.63416 -15.31206 -14.79823 -14.58087 -14.46759 -14.21659 -14.09006 -13.67716 -13.34809 -13.26759 -12.96578 -12.75487 -12.47595 -12.44579 -12.21591 -11.96760 -11.82869 -11.61047 -11.26540 -11.19756 -10.98092 -10.92915 -10.71822 -10.52741 -10.13049 -9.65713 -9.25114 -8.91037 -8.43957 -8.29792 -7.65426 -6.04949 -4.09827 1.10733 2.54085 3.21104 3.30590 3.35374 3.36214 3.43288 3.52125 3.80384 4.21071 4.43391 4.50581 4.75132 4.93660 5.00462 5.08459 5.20469 5.29254 5.30389 5.39685 5.45874 5.56415 5.63736 5.65116 5.69317 5.79412 5.83333 6.00186 6.02197 6.22236 6.33881 6.47050 6.85052 6.96506 7.11961 7.35920 7.45516 7.55233 7.91575 8.23103 8.43426 8.89714 9.11300 9.55454 11.02979 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016620 B = 0.005207 C = 0.004660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.298267 B = 5375.742922 C = 6006.635608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.598 5.598 4 C 0.248 3.752 5 C -0.526 4.526 6 H 0.055 0.945 7 C 0.063 3.937 8 N -0.894 5.894 9 Si 0.896 3.104 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.506 3.494 14 O -0.526 6.526 15 C 0.028 3.972 16 N -0.508 5.508 17 C 0.067 3.933 18 C -0.092 4.092 19 C -0.082 4.082 20 C 0.251 3.749 21 N -0.433 5.433 22 C -0.110 4.110 23 C 0.054 3.946 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.051 0.949 27 H 0.082 0.918 28 H 0.062 0.938 29 H 0.031 0.969 30 H 0.044 0.956 31 H 0.264 0.736 32 H 0.063 0.937 33 H 0.099 0.901 34 H 0.104 0.896 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.484 -5.335 15.110 16.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.331 5.331 4 C 0.129 3.871 5 C -0.565 4.565 6 H 0.073 0.927 7 C -0.139 4.139 8 N -0.533 5.533 9 Si 0.723 3.277 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.292 3.708 14 O -0.402 6.402 15 C -0.103 4.103 16 N -0.229 5.229 17 C -0.060 4.060 18 C -0.116 4.116 19 C -0.085 4.085 20 C -0.064 4.064 21 N -0.108 5.108 22 C -0.150 4.150 23 C -0.074 4.074 24 H 0.080 0.920 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.100 0.900 28 H 0.080 0.920 29 H 0.049 0.951 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.117 0.883 34 H 0.121 0.879 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.556 -5.503 15.322 16.906 hybrid contribution 1.270 -0.873 -0.443 1.603 sum -3.286 -6.376 14.879 16.518 Atomic orbital electron populations 1.22223 0.96746 1.01371 1.02419 1.21408 0.93551 0.84338 1.02551 1.48259 1.63921 1.13136 1.07735 1.19245 0.96112 0.93680 0.78090 1.21380 0.96958 1.31910 1.06271 0.92656 1.24912 0.97693 0.94940 0.96404 1.69914 1.35685 1.33367 1.14328 0.86605 0.84956 0.78225 0.77890 1.20332 1.21159 1.20215 1.20113 0.78890 0.87046 0.84740 1.90639 1.45126 1.17668 1.86804 1.22199 1.02599 0.94767 0.90755 1.62301 1.15692 1.43060 1.01829 1.21570 0.85588 0.93802 1.05078 1.23993 1.01649 0.94893 0.91078 1.17338 0.94262 0.91243 1.05686 1.26239 0.93348 0.93368 0.93449 1.81189 1.09434 1.10658 1.09533 1.21006 0.90031 1.00760 1.03159 1.22355 1.00775 0.92168 0.92093 0.91969 0.92250 0.92993 0.90002 0.92002 0.95119 0.93806 0.92662 0.91879 0.88297 0.87853 0.85889 0.86047 0.89805 0.89875 0.89658 0.89336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.10 10.24 37.15 0.38 -1.72 16 2 C 0.11 1.59 5.93 -4.05 -0.02 1.57 16 3 N -0.60 -11.84 2.46 -175.07 -0.43 -12.27 16 4 C 0.25 6.24 5.16 -5.20 -0.03 6.21 16 5 C -0.53 -14.47 9.39 -34.44 -0.32 -14.79 16 6 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.12 13.29 55.43 0.74 -25.38 16 9 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 C 0.51 9.63 7.28 -10.99 -0.08 9.55 16 14 O -0.53 -12.13 13.99 5.56 0.08 -12.05 16 15 C 0.03 0.37 3.08 -4.98 -0.02 0.35 16 16 N -0.51 -6.17 4.76 -237.59 -1.13 -7.31 16 17 C 0.07 0.81 5.57 -5.26 -0.03 0.78 16 18 C -0.09 -0.97 9.06 -36.47 -0.33 -1.30 16 19 C -0.08 -0.82 5.05 -104.79 -0.53 -1.35 16 20 C 0.25 3.06 15.16 -22.50 -0.34 2.72 16 21 N -0.43 -6.28 18.53 41.80 0.77 -5.51 16 22 C -0.11 -0.87 5.22 -28.02 -0.15 -1.01 16 23 C 0.05 0.45 6.03 -3.62 -0.02 0.43 16 24 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.60 7.22 -51.93 -0.38 0.22 16 27 H 0.08 1.31 8.07 -51.92 -0.42 0.89 16 28 H 0.06 0.77 6.44 -51.93 -0.33 0.43 16 29 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 30 H 0.04 1.25 7.42 -51.93 -0.39 0.87 16 31 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 32 H 0.06 0.78 5.23 -51.93 -0.27 0.51 16 33 H 0.10 1.10 7.14 -51.93 -0.37 0.73 16 34 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.12 1.95 5.76 -51.93 -0.30 1.65 16 36 H 0.12 1.23 7.97 -52.49 -0.42 0.81 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.08 0.63 7.12 -51.93 -0.37 0.26 16 39 H 0.08 0.62 8.07 -51.92 -0.42 0.20 16 40 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 331.85 15.07 5.00 5.00 Total: -1.00 -32.78 331.85 -7.32 -40.09 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: -5.74 Total: -2.16 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: -1.58 Total: 3.09 kcal Atomic # 7 Polarization: -50.42 SS G_CDS: -0.05 Total: -50.47 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: 0.08 Total: -12.05 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.78 -7.32 -40.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272598884.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.808 kcal (2) G-P(sol) polarization free energy of solvation -32.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds