Wall clock time and date at job start Mon Mar 30 2020 20:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46498 * 109.47055 * 2 1 4 4 C 1.46498 * 119.99989 * 269.99936 * 3 2 1 5 5 C 1.50695 * 109.47605 * 269.99931 * 4 3 2 6 6 H 1.08001 * 120.00104 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00294 * 179.97438 * 5 4 3 8 8 N 1.31510 * 120.00161 * 0.02562 * 7 5 4 9 9 Si 1.86809 * 120.00061 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46945 * 60.00051 * 9 7 5 11 11 H 1.48503 * 109.46981 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46966 * 300.00071 * 9 7 5 13 13 C 1.34779 * 120.00005 * 90.00222 * 3 2 1 14 14 O 1.21279 * 119.99914 * 179.97438 * 13 3 2 15 15 C 1.50697 * 119.99873 * 0.02562 * 13 3 2 16 16 N 1.46899 * 109.47146 * 179.97438 * 15 13 3 17 17 C 1.46833 * 111.00088 * 293.95474 * 16 15 13 18 18 C 1.50185 * 110.23866 * 287.80928 * 17 16 15 19 19 C 1.31990 * 122.98920 * 343.19879 * 18 17 16 20 20 C 1.43199 * 118.69422 * 180.02562 * 19 18 17 21 21 N 6.89786 * 124.49722 * 107.23473 * 2 1 3 22 22 C 1.50338 * 122.61323 * 359.77761 * 19 18 17 23 23 C 1.47211 * 110.99970 * 170.91936 * 16 15 13 24 24 H 1.08998 * 109.47291 * 59.99880 * 1 2 3 25 25 H 1.09005 * 109.47392 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47255 * 299.99363 * 1 2 3 27 27 H 1.09008 * 109.47008 * 240.00117 * 2 1 3 28 28 H 1.09001 * 109.47801 * 120.00183 * 2 1 3 29 29 H 1.09004 * 109.47447 * 30.00404 * 4 3 2 30 30 H 1.09001 * 109.47148 * 150.00306 * 4 3 2 31 31 H 0.96997 * 120.00434 * 180.02562 * 8 7 5 32 32 H 1.08999 * 109.47431 * 59.99895 * 15 13 3 33 33 H 1.08998 * 109.46791 * 299.99486 * 15 13 3 34 34 H 1.08997 * 109.34431 * 167.57987 * 17 16 15 35 35 H 1.08992 * 109.21502 * 47.96547 * 17 16 15 36 36 H 1.08002 * 118.50103 * 162.91124 * 18 17 16 37 37 H 1.09000 * 109.57520 * 223.74711 * 22 19 18 38 38 H 1.08999 * 109.23130 * 103.92633 * 22 19 18 39 39 H 1.09007 * 109.62334 * 173.72078 * 23 16 15 40 40 H 1.08994 * 109.62511 * 294.08902 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2624 2.0718 -1.2687 5 6 3.6856 1.8351 -1.7038 6 1 4.3426 1.2303 -1.0963 7 6 4.1489 2.3897 -2.8780 8 7 3.3489 3.1257 -3.6181 9 14 5.9130 2.0956 -3.4177 10 1 6.1401 0.6389 -3.5949 11 1 6.1604 2.7958 -4.7037 12 1 6.8409 2.6190 -2.3831 13 6 2.2429 2.0165 1.1672 14 8 2.6476 3.1598 1.1672 15 6 1.9923 1.3059 2.4723 16 7 2.3110 2.2057 3.5889 17 6 3.7471 2.5094 3.6266 18 6 4.5202 1.3080 4.0897 19 6 3.9578 0.2852 4.7059 20 6 4.7832 -0.8135 5.1086 21 7 5.4366 -1.6844 5.4296 22 6 2.4858 0.2303 5.0068 23 6 1.8775 1.6285 4.8718 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5137 0.8900 27 1 1.8933 -0.5139 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 1.5816 1.6877 -2.0284 30 1 2.0955 3.1410 -1.1384 31 1 3.6747 3.5156 -4.4444 32 1 2.6229 0.4187 2.5298 33 1 0.9445 1.0114 2.5302 34 1 3.9230 3.3381 4.3124 35 1 4.0807 2.7903 2.6277 36 1 5.5841 1.2775 3.9061 37 1 2.3341 -0.1347 6.0226 38 1 2.0005 -0.4458 4.3030 39 1 2.2223 2.2585 5.6918 40 1 0.7899 1.5614 4.8942 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272598884.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:19:03 Heat of formation + Delta-G solvation = -1.541057 kcal Electronic energy + Delta-G solvation = -21871.367011 eV Core-core repulsion = 18685.974596 eV Total energy + Delta-G solvation = -3185.392416 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.35452 -39.78999 -37.70842 -36.80218 -34.89769 -33.92385 -31.91970 -31.56466 -30.13807 -28.29544 -25.57126 -24.62939 -24.22242 -23.66808 -21.01245 -19.71194 -18.58732 -18.17199 -17.95945 -17.04233 -16.62951 -16.16881 -15.69157 -15.44020 -15.40944 -15.22796 -14.75581 -14.56157 -14.49013 -14.19640 -13.88347 -13.70470 -13.54341 -13.29394 -13.23682 -13.10148 -13.08408 -12.70624 -12.62180 -12.43275 -12.22701 -12.08923 -11.77409 -11.70011 -11.67550 -10.61478 -10.43166 -10.04411 -9.33290 -9.22755 -8.19047 -6.33505 0.24092 1.37011 1.40232 1.47537 1.59527 1.97080 2.29284 2.30116 2.44466 2.77082 3.10203 3.19660 3.72187 3.84467 4.04588 4.12703 4.21420 4.31119 4.43232 4.45235 4.55170 4.63295 4.70309 4.73903 4.93111 4.99866 5.02601 5.04906 5.07262 5.12190 5.28734 5.28905 5.45679 5.49112 5.63010 5.91420 6.01272 6.11642 6.16791 6.42160 6.75242 6.92771 7.33183 7.63049 8.87357 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016620 B = 0.005207 C = 0.004660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.298267 B = 5375.742922 C = 6006.635608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.100 3.900 3 N -0.606 5.606 4 C 0.265 3.735 5 C -0.539 4.539 6 H 0.052 0.948 7 C 0.010 3.990 8 N -0.928 5.928 9 Si 0.961 3.039 10 H -0.264 1.264 11 H -0.279 1.279 12 H -0.277 1.277 13 C 0.495 3.505 14 O -0.577 6.577 15 C 0.046 3.954 16 N -0.527 5.527 17 C 0.074 3.926 18 C -0.095 4.095 19 C -0.070 4.070 20 C 0.271 3.729 21 N -0.475 5.475 22 C -0.107 4.107 23 C 0.058 3.942 24 H 0.036 0.964 25 H 0.093 0.907 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.098 0.902 29 H 0.018 0.982 30 H -0.003 1.003 31 H 0.266 0.734 32 H 0.079 0.921 33 H 0.131 0.869 34 H 0.117 0.883 35 H 0.080 0.920 36 H 0.120 0.880 37 H 0.106 0.894 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.099 -7.239 17.096 19.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.023 4.023 3 N -0.339 5.339 4 C 0.143 3.857 5 C -0.577 4.577 6 H 0.070 0.930 7 C -0.189 4.189 8 N -0.568 5.568 9 Si 0.786 3.214 10 H -0.188 1.188 11 H -0.204 1.204 12 H -0.202 1.202 13 C 0.284 3.716 14 O -0.457 6.457 15 C -0.085 4.085 16 N -0.248 5.248 17 C -0.054 4.054 18 C -0.120 4.120 19 C -0.073 4.073 20 C -0.044 4.044 21 N -0.152 5.152 22 C -0.147 4.147 23 C -0.069 4.069 24 H 0.055 0.945 25 H 0.112 0.888 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.116 0.884 29 H 0.036 0.964 30 H 0.015 0.985 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.149 0.851 34 H 0.134 0.866 35 H 0.098 0.902 36 H 0.138 0.862 37 H 0.124 0.876 38 H 0.114 0.886 39 H 0.116 0.884 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -5.193 -7.453 17.338 19.573 hybrid contribution 1.429 -0.236 -1.030 1.777 sum -3.764 -7.689 16.308 18.418 Atomic orbital electron populations 1.22154 0.94438 1.03407 1.01891 1.21711 0.95426 0.81565 1.03567 1.48280 1.64346 1.14931 1.06297 1.18630 0.94916 0.91572 0.80573 1.21674 0.97982 1.31710 1.06373 0.92991 1.25790 1.01974 0.94612 0.96536 1.70037 1.37682 1.34292 1.14781 0.85567 0.79583 0.78817 0.77438 1.18830 1.20450 1.20244 1.21250 0.77352 0.86728 0.86286 1.90614 1.47131 1.20229 1.87713 1.22086 1.04649 0.94180 0.87582 1.62261 1.15478 1.43834 1.03273 1.21331 0.86137 0.94914 1.03008 1.23836 1.01590 0.94749 0.91831 1.17534 0.95293 0.89817 1.04702 1.26520 0.92522 0.92981 0.92335 1.81216 1.10697 1.12208 1.11037 1.21107 0.87883 1.00794 1.04874 1.22500 1.02058 0.92293 0.90070 0.94507 0.88835 0.91543 0.91549 0.88389 0.96436 0.98456 0.92496 0.90378 0.85147 0.86559 0.90207 0.86194 0.87564 0.88626 0.88436 0.87126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.61 10.24 71.98 0.74 -2.88 16 2 C 0.10 2.84 5.93 86.38 0.51 3.35 16 3 N -0.61 -24.32 2.46 -826.17 -2.03 -26.35 16 4 C 0.26 14.00 5.16 85.63 0.44 14.44 16 5 C -0.54 -30.57 9.39 25.60 0.24 -30.33 16 6 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 7 C 0.01 0.57 5.46 84.65 0.46 1.03 16 8 N -0.93 -55.94 13.29 21.45 0.28 -55.65 16 9 Si 0.96 44.69 29.54 68.60 2.03 46.72 16 10 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 11 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 12 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 13 C 0.50 18.90 7.28 87.66 0.64 19.54 16 14 O -0.58 -27.81 13.99 -3.02 -0.04 -27.85 16 15 C 0.05 1.08 3.08 85.56 0.26 1.34 16 16 N -0.53 -11.57 4.76 -905.58 -4.31 -15.89 16 17 C 0.07 1.73 5.57 85.41 0.48 2.21 16 18 C -0.10 -1.87 9.06 24.62 0.22 -1.64 16 19 C -0.07 -1.19 5.05 -19.63 -0.10 -1.29 16 20 C 0.27 5.98 15.16 88.34 1.34 7.32 16 21 N -0.48 -13.08 18.53 18.99 0.35 -12.72 16 22 C -0.11 -1.19 5.22 29.76 0.16 -1.04 16 23 C 0.06 0.70 6.03 86.27 0.52 1.22 16 24 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 26 H 0.07 1.30 7.22 -2.39 -0.02 1.29 16 27 H 0.07 2.09 8.07 -2.38 -0.02 2.07 16 28 H 0.10 2.08 6.44 -2.39 -0.02 2.06 16 29 H 0.02 0.96 8.07 -2.39 -0.02 0.94 16 30 H 0.00 -0.16 7.42 -2.39 -0.02 -0.18 16 31 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 32 H 0.08 1.64 5.23 -2.39 -0.01 1.63 16 33 H 0.13 2.29 7.14 -2.39 -0.02 2.28 16 34 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.08 2.63 5.76 -2.39 -0.01 2.62 16 36 H 0.12 2.34 7.97 -2.91 -0.02 2.32 16 37 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.10 0.91 7.12 -2.39 -0.02 0.89 16 39 H 0.10 1.00 8.07 -2.38 -0.02 0.98 16 40 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -75.97 331.85 3.23 -72.74 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: 1.04 Total: 5.72 kcal Atomic # 6 Polarization: 7.37 SS G_CDS: 5.91 Total: 13.28 kcal Atomic # 7 Polarization: -104.91 SS G_CDS: -5.71 Total: -110.61 kcal Atomic # 8 Polarization: -27.81 SS G_CDS: -0.04 Total: -27.85 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -75.97 3.23 -72.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272598884.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.201 kcal (2) G-P(sol) polarization free energy of solvation -75.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds