Wall clock time and date at job start Mon Mar 30 2020 20:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.47131 * 2 1 4 4 C 1.36912 * 119.99588 * 263.77350 * 3 2 1 5 5 H 1.07999 * 120.00101 * 136.06504 * 4 3 2 6 6 C 1.39021 * 119.99893 * 316.34542 * 4 3 2 7 7 N 1.31390 * 119.99743 * 169.67410 * 6 4 3 8 8 Si 1.86794 * 119.99950 * 349.67114 * 6 4 3 9 9 H 1.48501 * 109.47480 * 94.90951 * 8 6 4 10 10 H 1.48502 * 109.47079 * 214.91134 * 8 6 4 11 11 H 1.48499 * 109.47240 * 334.90894 * 8 6 4 12 12 C 1.34771 * 120.00408 * 83.77106 * 3 2 1 13 13 O 1.21636 * 119.99836 * 5.66063 * 12 3 2 14 14 C 1.47434 * 120.00108 * 185.65718 * 12 3 2 15 15 C 1.40408 * 120.48000 * 141.51415 * 14 12 3 16 16 C 1.36843 * 118.48833 * 179.97438 * 15 14 12 17 17 C 1.39414 * 119.38424 * 359.97438 * 16 15 14 18 18 N 1.38464 * 119.53336 * 179.97438 * 17 16 15 19 19 C 1.46508 * 119.99926 * 0.02562 * 18 17 16 20 20 C 1.52996 * 109.46894 * 84.99876 * 19 18 17 21 21 C 1.53001 * 109.47206 * 204.99752 * 19 18 17 22 22 N 1.32609 * 120.93599 * 359.97438 * 17 16 15 23 23 C 1.31667 * 121.64345 * 359.76696 * 22 17 16 24 24 H 1.09007 * 109.46951 * 184.94254 * 1 2 3 25 25 H 1.09005 * 109.46815 * 304.93505 * 1 2 3 26 26 H 1.08996 * 109.47105 * 64.93901 * 1 2 3 27 27 H 1.08992 * 109.47132 * 239.99278 * 2 1 3 28 28 H 1.09001 * 109.47054 * 119.99656 * 2 1 3 29 29 H 0.97004 * 119.99290 * 179.97438 * 7 6 4 30 30 H 1.08002 * 120.75425 * 359.95892 * 15 14 12 31 31 H 1.07999 * 120.30645 * 179.97438 * 16 15 14 32 32 H 0.97004 * 120.00533 * 179.97438 * 18 17 16 33 33 H 1.08994 * 109.46948 * 325.00092 * 19 18 17 34 34 H 1.09003 * 109.47570 * 299.99577 * 20 19 18 35 35 H 1.08998 * 109.47583 * 60.00174 * 20 19 18 36 36 H 1.09008 * 109.46900 * 180.02562 * 20 19 18 37 37 H 1.08999 * 109.46825 * 60.00012 * 21 19 18 38 38 H 1.08998 * 109.47079 * 179.97438 * 21 19 18 39 39 H 1.09002 * 109.46871 * 300.00173 * 21 19 18 40 40 H 1.07997 * 119.74973 * 180.24597 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3678 1.9837 -1.1787 5 1 2.0574 2.9985 -1.3793 6 6 3.1172 1.2872 -2.1200 7 7 3.2810 1.7820 -3.3260 8 14 3.8912 -0.3522 -1.6699 9 1 2.9907 -1.4564 -2.0886 10 1 5.1977 -0.4894 -2.3623 11 1 4.1005 -0.4142 -0.2011 12 6 2.1236 2.0589 1.1602 13 8 1.9123 1.4933 2.2161 14 6 2.4950 3.4856 1.1496 15 6 1.8945 4.3846 2.0455 16 6 2.2700 5.6997 2.0006 17 6 3.2302 6.1057 1.0749 18 7 3.6120 7.4357 1.0264 19 6 3.0084 8.4051 1.9442 20 6 3.7653 8.3883 3.2737 21 6 3.0857 9.8047 1.3310 22 7 3.7829 5.2361 0.2402 23 6 3.4542 3.9612 0.2532 24 1 -0.3633 -1.0239 0.0885 25 1 -0.3633 0.5885 0.8425 26 1 -0.3633 0.4353 -0.9309 27 1 1.8933 -0.5139 -0.8898 28 1 1.8933 -0.5138 0.8900 29 1 3.8042 1.2961 -3.9826 30 1 1.1529 4.0458 2.7539 31 1 1.8267 6.4164 2.6760 32 1 4.2798 7.7256 0.3853 33 1 1.9651 8.1411 2.1168 34 1 3.7102 7.3912 3.7107 35 1 4.8087 8.6523 3.1013 36 1 3.3159 9.1092 3.9568 37 1 2.5465 9.8166 0.3838 38 1 2.6362 10.5258 2.0137 39 1 4.1292 10.0686 1.1585 40 1 3.9266 3.2788 -0.4378 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278502243.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:19:13 Heat of formation + Delta-G solvation = 12.941521 kcal Electronic energy + Delta-G solvation = -21746.360141 eV Core-core repulsion = 18561.595737 eV Total energy + Delta-G solvation = -3184.764404 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.00803 -38.58672 -36.72088 -35.11903 -32.47441 -32.13095 -31.57923 -30.31420 -28.29190 -27.35206 -25.00135 -23.54631 -23.26040 -21.99777 -20.82397 -19.20962 -17.68093 -17.24481 -16.52592 -16.03298 -15.33064 -14.84197 -14.67371 -14.34313 -14.07320 -13.72636 -13.41692 -13.35657 -12.81573 -12.71468 -12.56170 -12.41768 -12.38329 -12.20624 -11.96762 -11.75548 -11.51523 -11.30537 -11.13232 -11.04887 -10.65539 -10.09076 -9.84562 -9.75397 -9.44462 -9.20058 -8.89836 -8.53822 -7.75366 -7.27729 -6.46073 -4.16829 1.73740 1.97635 3.05754 3.21973 3.28858 3.32809 3.79500 4.10697 4.35982 4.61522 4.65913 4.89778 4.96591 5.01958 5.27249 5.31561 5.38533 5.57422 5.60961 5.69768 5.72597 5.76239 5.80486 5.90744 5.99556 6.04860 6.10366 6.12663 6.39098 6.41753 6.57142 6.60931 6.83483 6.87017 7.17473 7.37961 7.43578 7.84795 8.06771 8.23004 8.72080 8.91435 9.30777 9.65397 10.62350 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024262 B = 0.004995 C = 0.004456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.799617 B = 5604.460102 C = 6282.532861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.099 3.901 3 N -0.463 5.463 4 C -0.347 4.347 5 H 0.107 0.893 6 C 0.066 3.934 7 N -0.862 5.862 8 Si 0.882 3.118 9 H -0.274 1.274 10 H -0.288 1.288 11 H -0.259 1.259 12 C 0.538 3.462 13 O -0.596 6.596 14 C -0.214 4.214 15 C 0.002 3.998 16 C -0.260 4.260 17 C 0.404 3.596 18 N -0.723 5.723 19 C 0.147 3.853 20 C -0.170 4.170 21 C -0.160 4.160 22 N -0.553 5.553 23 C 0.209 3.791 24 H 0.051 0.949 25 H 0.054 0.946 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.276 0.724 30 H 0.129 0.871 31 H 0.125 0.875 32 H 0.401 0.599 33 H 0.081 0.919 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.070 0.930 39 H 0.060 0.940 40 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.760 10.489 7.592 12.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.024 4.024 3 N -0.183 5.183 4 C -0.474 4.474 5 H 0.124 0.876 6 C -0.142 4.142 7 N -0.496 5.496 8 Si 0.710 3.290 9 H -0.201 1.201 10 H -0.215 1.215 11 H -0.183 1.183 12 C 0.327 3.673 13 O -0.481 6.481 14 C -0.221 4.221 15 C -0.024 4.024 16 C -0.285 4.285 17 C 0.169 3.831 18 N -0.356 5.356 19 C 0.041 3.959 20 C -0.229 4.229 21 C -0.217 4.217 22 N -0.270 5.270 23 C 0.051 3.949 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.147 0.853 31 H 0.143 0.857 32 H 0.237 0.763 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.079 0.921 40 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -0.283 10.579 7.433 12.932 hybrid contribution -0.042 -0.999 0.178 1.015 sum -0.324 9.580 7.610 12.239 Atomic orbital electron populations 1.22014 0.96447 1.00740 1.02241 1.21578 0.94430 0.85511 1.00891 1.43593 1.57048 1.11447 1.06207 1.19137 1.33619 1.01649 0.93013 0.87608 1.25420 0.95490 0.98388 0.94893 1.69666 1.37643 1.39272 1.03056 0.86828 0.78744 0.83403 0.80027 1.20088 1.21504 1.18317 1.18004 0.79487 0.86359 0.83421 1.90629 1.55984 1.70320 1.31161 1.20562 1.04329 0.95342 1.01893 1.21000 0.95404 0.91641 0.94359 1.20905 1.05006 0.97134 1.05413 1.18551 0.89273 0.85598 0.89672 1.44417 1.46457 1.04092 1.40660 1.20901 0.97582 0.88267 0.89170 1.22320 1.00943 1.02551 0.97075 1.22053 1.02647 0.95397 1.01633 1.67417 1.30455 1.03833 1.25288 1.23603 0.90290 0.89549 0.91463 0.92959 0.92663 0.92207 0.91729 0.91433 0.91333 0.85280 0.85707 0.76335 0.90097 0.91972 0.92344 0.91880 0.91843 0.91100 0.92071 0.79623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.99 10.19 37.16 0.38 -2.62 16 2 C 0.10 2.18 4.41 -4.04 -0.02 2.16 16 3 N -0.46 -11.20 2.14 -116.02 -0.25 -11.45 16 4 C -0.35 -8.85 6.69 -14.99 -0.10 -8.95 16 5 H 0.11 2.91 6.78 -52.49 -0.36 2.55 16 6 C 0.07 1.70 5.40 -17.45 -0.09 1.60 16 7 N -0.86 -23.31 13.96 55.50 0.77 -22.53 16 8 Si 0.88 20.28 24.67 -169.99 -4.19 16.09 16 9 H -0.27 -6.06 6.85 56.52 0.39 -5.68 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 11 H -0.26 -6.07 6.88 56.52 0.39 -5.68 16 12 C 0.54 12.98 7.28 -12.52 -0.09 12.88 16 13 O -0.60 -15.27 16.57 5.25 0.09 -15.18 16 14 C -0.21 -4.68 5.40 -104.82 -0.57 -5.24 16 15 C 0.00 0.04 9.72 -39.27 -0.38 -0.34 16 16 C -0.26 -4.24 8.74 -39.65 -0.35 -4.59 16 17 C 0.40 6.94 7.62 -155.26 -1.18 5.76 16 18 N -0.72 -9.54 5.22 -53.95 -0.28 -9.82 16 19 C 0.15 1.44 2.86 -67.93 -0.19 1.25 16 20 C -0.17 -1.54 9.39 37.16 0.35 -1.20 16 21 C -0.16 -1.21 9.38 37.16 0.35 -0.86 16 22 N -0.55 -11.16 10.38 -12.12 -0.13 -11.29 16 23 C 0.21 4.57 9.01 -17.10 -0.15 4.42 16 24 H 0.05 0.84 8.14 -51.92 -0.42 0.42 16 25 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 27 H 0.06 1.44 3.55 -51.93 -0.18 1.25 16 28 H 0.07 1.49 7.54 -51.93 -0.39 1.10 16 29 H 0.28 7.01 8.31 -40.82 -0.34 6.68 16 30 H 0.13 2.24 8.06 -52.49 -0.42 1.82 16 31 H 0.13 1.64 6.01 -52.49 -0.32 1.33 16 32 H 0.40 5.05 8.72 -40.82 -0.36 4.69 16 33 H 0.08 0.81 6.42 -51.93 -0.33 0.47 16 34 H 0.06 0.66 7.63 -51.93 -0.40 0.27 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.19 4.39 5.96 -52.49 -0.31 4.08 16 LS Contribution 324.00 15.07 4.88 4.88 Total: -1.00 -29.54 324.00 -6.77 -36.31 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -5.61 Total: 8.71 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: -2.05 Total: 4.28 kcal Atomic # 7 Polarization: -55.21 SS G_CDS: 0.12 Total: -55.10 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: 0.09 Total: -15.18 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -4.19 Total: 16.09 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.54 -6.77 -36.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278502243.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.250 kcal (2) G-P(sol) polarization free energy of solvation -29.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds