Wall clock time and date at job start Mon Mar 30 2020 20:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.47131 * 2 1 4 4 C 1.36912 * 119.99588 * 263.77350 * 3 2 1 5 5 H 1.07999 * 120.00101 * 136.06504 * 4 3 2 6 6 C 1.39021 * 119.99893 * 316.34542 * 4 3 2 7 7 N 1.31390 * 119.99743 * 169.67410 * 6 4 3 8 8 Si 1.86794 * 119.99950 * 349.67114 * 6 4 3 9 9 H 1.48501 * 109.47480 * 94.90951 * 8 6 4 10 10 H 1.48502 * 109.47079 * 214.91134 * 8 6 4 11 11 H 1.48499 * 109.47240 * 334.90894 * 8 6 4 12 12 C 1.34771 * 120.00408 * 83.77106 * 3 2 1 13 13 O 1.21636 * 119.99836 * 5.66063 * 12 3 2 14 14 C 1.47434 * 120.00108 * 185.65718 * 12 3 2 15 15 C 1.40408 * 120.48000 * 141.51415 * 14 12 3 16 16 C 1.36843 * 118.48833 * 179.97438 * 15 14 12 17 17 C 1.39414 * 119.38424 * 359.97438 * 16 15 14 18 18 N 1.38464 * 119.53336 * 179.97438 * 17 16 15 19 19 C 1.46508 * 119.99926 * 0.02562 * 18 17 16 20 20 C 1.52996 * 109.46894 * 84.99876 * 19 18 17 21 21 C 1.53001 * 109.47206 * 204.99752 * 19 18 17 22 22 N 1.32609 * 120.93599 * 359.97438 * 17 16 15 23 23 C 1.31667 * 121.64345 * 359.76696 * 22 17 16 24 24 H 1.09007 * 109.46951 * 184.94254 * 1 2 3 25 25 H 1.09005 * 109.46815 * 304.93505 * 1 2 3 26 26 H 1.08996 * 109.47105 * 64.93901 * 1 2 3 27 27 H 1.08992 * 109.47132 * 239.99278 * 2 1 3 28 28 H 1.09001 * 109.47054 * 119.99656 * 2 1 3 29 29 H 0.97004 * 119.99290 * 179.97438 * 7 6 4 30 30 H 1.08002 * 120.75425 * 359.95892 * 15 14 12 31 31 H 1.07999 * 120.30645 * 179.97438 * 16 15 14 32 32 H 0.97004 * 120.00533 * 179.97438 * 18 17 16 33 33 H 1.08994 * 109.46948 * 325.00092 * 19 18 17 34 34 H 1.09003 * 109.47570 * 299.99577 * 20 19 18 35 35 H 1.08998 * 109.47583 * 60.00174 * 20 19 18 36 36 H 1.09008 * 109.46900 * 180.02562 * 20 19 18 37 37 H 1.08999 * 109.46825 * 60.00012 * 21 19 18 38 38 H 1.08998 * 109.47079 * 179.97438 * 21 19 18 39 39 H 1.09002 * 109.46871 * 300.00173 * 21 19 18 40 40 H 1.07997 * 119.74973 * 180.24597 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3678 1.9837 -1.1787 5 1 2.0574 2.9985 -1.3793 6 6 3.1172 1.2872 -2.1200 7 7 3.2810 1.7820 -3.3260 8 14 3.8912 -0.3522 -1.6699 9 1 2.9907 -1.4564 -2.0886 10 1 5.1977 -0.4894 -2.3623 11 1 4.1005 -0.4142 -0.2011 12 6 2.1236 2.0589 1.1602 13 8 1.9123 1.4933 2.2161 14 6 2.4950 3.4856 1.1496 15 6 1.8945 4.3846 2.0455 16 6 2.2700 5.6997 2.0006 17 6 3.2302 6.1057 1.0749 18 7 3.6120 7.4357 1.0264 19 6 3.0084 8.4051 1.9442 20 6 3.7653 8.3883 3.2737 21 6 3.0857 9.8047 1.3310 22 7 3.7829 5.2361 0.2402 23 6 3.4542 3.9612 0.2532 24 1 -0.3633 -1.0239 0.0885 25 1 -0.3633 0.5885 0.8425 26 1 -0.3633 0.4353 -0.9309 27 1 1.8933 -0.5139 -0.8898 28 1 1.8933 -0.5138 0.8900 29 1 3.8042 1.2961 -3.9826 30 1 1.1529 4.0458 2.7539 31 1 1.8267 6.4164 2.6760 32 1 4.2798 7.7256 0.3853 33 1 1.9651 8.1411 2.1168 34 1 3.7102 7.3912 3.7107 35 1 4.8087 8.6523 3.1013 36 1 3.3159 9.1092 3.9568 37 1 2.5465 9.8166 0.3838 38 1 2.6362 10.5258 2.0137 39 1 4.1292 10.0686 1.1585 40 1 3.9266 3.2788 -0.4378 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278502243.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:19:12 Heat of formation + Delta-G solvation = -5.843240 kcal Electronic energy + Delta-G solvation = -21747.174709 eV Core-core repulsion = 18561.595737 eV Total energy + Delta-G solvation = -3185.578972 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.56417 -40.25415 -37.83891 -37.02070 -34.18691 -33.72118 -32.95911 -31.87865 -29.70330 -28.04147 -26.94909 -25.12091 -24.70034 -23.53275 -21.86792 -21.00797 -19.38387 -18.62673 -18.13544 -17.68868 -16.93721 -16.35603 -16.05747 -15.76508 -15.44723 -15.17587 -15.14002 -14.62450 -14.50594 -14.18484 -13.94912 -13.83854 -13.70615 -13.52245 -13.09501 -13.02247 -12.82480 -12.77374 -12.52353 -12.28178 -11.93716 -11.90610 -11.63277 -11.26227 -11.09388 -10.69714 -10.65596 -10.23656 -9.68313 -8.63367 -8.45599 -6.18616 0.18683 0.48776 1.21281 1.33870 1.43784 1.99837 2.18756 2.19779 2.62131 2.87569 3.16101 3.74128 3.94843 4.00781 4.05809 4.16247 4.22005 4.26906 4.28997 4.37447 4.45559 4.48948 4.79367 4.81559 4.85976 4.90280 4.96055 4.97774 5.02558 5.11650 5.25251 5.28802 5.36686 5.41733 5.51210 5.66782 6.07151 6.16294 6.24534 6.60124 6.93427 7.26419 7.36579 7.73823 8.65931 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024262 B = 0.004995 C = 0.004456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.799617 B = 5604.460102 C = 6282.532861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.089 3.911 3 N -0.472 5.472 4 C -0.333 4.333 5 H 0.078 0.922 6 C 0.031 3.969 7 N -0.899 5.899 8 Si 0.931 3.069 9 H -0.254 1.254 10 H -0.286 1.286 11 H -0.269 1.269 12 C 0.534 3.466 13 O -0.615 6.615 14 C -0.247 4.247 15 C 0.002 3.998 16 C -0.243 4.243 17 C 0.405 3.595 18 N -0.711 5.711 19 C 0.138 3.862 20 C -0.166 4.166 21 C -0.154 4.154 22 N -0.576 5.576 23 C 0.201 3.799 24 H 0.087 0.913 25 H 0.047 0.953 26 H 0.053 0.947 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.280 0.720 30 H 0.143 0.857 31 H 0.165 0.835 32 H 0.405 0.595 33 H 0.086 0.914 34 H 0.045 0.955 35 H 0.057 0.943 36 H 0.089 0.911 37 H 0.057 0.943 38 H 0.093 0.907 39 H 0.065 0.935 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.350 11.851 9.049 14.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.033 4.033 3 N -0.192 5.192 4 C -0.461 4.461 5 H 0.096 0.904 6 C -0.173 4.173 7 N -0.536 5.536 8 Si 0.757 3.243 9 H -0.180 1.180 10 H -0.213 1.213 11 H -0.193 1.193 12 C 0.325 3.675 13 O -0.502 6.502 14 C -0.255 4.255 15 C -0.024 4.024 16 C -0.267 4.267 17 C 0.168 3.832 18 N -0.342 5.342 19 C 0.034 3.966 20 C -0.225 4.225 21 C -0.211 4.211 22 N -0.294 5.294 23 C 0.043 3.957 24 H 0.106 0.894 25 H 0.066 0.934 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.161 0.839 31 H 0.182 0.818 32 H 0.240 0.760 33 H 0.104 0.896 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.107 0.893 37 H 0.076 0.924 38 H 0.112 0.888 39 H 0.084 0.916 40 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -0.880 11.976 8.891 14.942 hybrid contribution 0.155 -1.180 -0.190 1.205 sum -0.725 10.797 8.702 13.886 Atomic orbital electron populations 1.21937 0.94116 1.02855 1.01566 1.21752 0.96484 0.84323 1.00748 1.43714 1.57437 1.12305 1.05784 1.18823 1.33342 1.00687 0.93285 0.90426 1.25892 0.95707 1.01083 0.94640 1.69735 1.38980 1.40833 1.04005 0.86056 0.78387 0.80845 0.79008 1.17975 1.21305 1.19318 1.18386 0.78722 0.87317 0.83035 1.90589 1.57021 1.71044 1.31581 1.20489 1.06160 0.94775 1.04041 1.21198 0.95322 0.92142 0.93705 1.21226 1.03762 0.96798 1.04952 1.18889 0.88815 0.86632 0.88893 1.44737 1.45788 1.02973 1.40728 1.21256 0.97656 0.88550 0.89113 1.22287 1.01085 1.02374 0.96735 1.22029 1.03217 0.94156 1.01747 1.67348 1.31745 1.03527 1.26812 1.23080 0.90917 0.90152 0.91546 0.89399 0.93405 0.92770 0.91817 0.91467 0.90980 0.83903 0.81792 0.75966 0.89579 0.93589 0.92402 0.89268 0.92430 0.88777 0.91564 0.82489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.46 10.19 71.98 0.73 -4.73 16 2 C 0.09 3.91 4.41 86.38 0.38 4.29 16 3 N -0.47 -23.33 2.14 -639.24 -1.37 -24.70 16 4 C -0.33 -17.63 6.69 84.09 0.56 -17.07 16 5 H 0.08 4.51 6.78 -2.91 -0.02 4.49 16 6 C 0.03 1.64 5.40 84.95 0.46 2.10 16 7 N -0.90 -49.94 13.96 21.68 0.30 -49.64 16 8 Si 0.93 42.14 24.67 68.60 1.69 43.84 16 9 H -0.25 -10.64 6.85 99.48 0.68 -9.95 16 10 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 11 H -0.27 -12.48 6.88 99.48 0.68 -11.79 16 12 C 0.53 26.36 7.28 86.67 0.63 27.00 16 13 O -0.62 -31.83 16.57 -4.15 -0.07 -31.90 16 14 C -0.25 -11.04 5.40 -19.99 -0.11 -11.14 16 15 C 0.00 0.09 9.72 22.47 0.22 0.31 16 16 C -0.24 -7.44 8.74 22.23 0.19 -7.24 16 17 C 0.41 13.45 7.62 133.25 1.01 14.46 16 18 N -0.71 -17.30 5.22 -324.61 -1.70 -19.00 16 19 C 0.14 2.26 2.86 44.99 0.13 2.39 16 20 C -0.17 -2.45 9.39 71.98 0.68 -1.77 16 21 C -0.15 -1.80 9.38 71.98 0.68 -1.12 16 22 N -0.58 -23.64 10.38 -192.25 -2.00 -25.64 16 23 C 0.20 9.17 9.01 85.05 0.77 9.93 16 24 H 0.09 2.62 8.14 -2.38 -0.02 2.60 16 25 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 26 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.06 2.78 3.55 -2.39 -0.01 2.78 16 28 H 0.07 2.93 7.54 -2.39 -0.02 2.91 16 29 H 0.28 14.53 8.31 -92.71 -0.77 13.76 16 30 H 0.14 4.77 8.06 -2.91 -0.02 4.74 16 31 H 0.16 3.68 6.01 -2.91 -0.02 3.66 16 32 H 0.40 9.50 8.72 -92.70 -0.81 8.70 16 33 H 0.09 1.37 6.42 -2.39 -0.02 1.35 16 34 H 0.04 0.84 7.63 -2.39 -0.02 0.82 16 35 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 37 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.16 7.95 5.96 -2.91 -0.02 7.93 16 Total: -1.00 -65.39 324.00 3.40 -61.99 By element: Atomic # 1 Polarization: 27.45 SS G_CDS: 0.20 Total: 27.65 kcal Atomic # 6 Polarization: 11.07 SS G_CDS: 6.33 Total: 17.40 kcal Atomic # 7 Polarization: -114.22 SS G_CDS: -4.76 Total: -118.98 kcal Atomic # 8 Polarization: -31.83 SS G_CDS: -0.07 Total: -31.90 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 1.69 Total: 43.84 kcal Total: -65.39 3.40 -61.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278502243.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.149 kcal (2) G-P(sol) polarization free energy of solvation -65.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds