Wall clock time and date at job start Mon Mar 30 2020 20:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.46578 * 2 1 4 4 C 1.46497 * 119.99908 * 269.99627 * 3 2 1 5 5 C 1.50702 * 109.47078 * 270.00112 * 4 3 2 6 6 H 1.08004 * 120.00179 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00100 * 180.02562 * 5 4 3 8 8 N 1.31517 * 119.99844 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00266 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.46923 * 59.99617 * 9 7 5 11 11 H 1.48490 * 109.47460 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46959 * 299.99955 * 9 7 5 13 13 C 1.34774 * 119.99972 * 90.00091 * 3 2 1 14 14 O 1.21594 * 119.99941 * 179.97438 * 13 3 2 15 15 N 1.34776 * 120.00507 * 359.97438 * 13 3 2 16 16 C 1.39968 * 120.00648 * 173.75695 * 15 13 3 17 17 C 1.39277 * 120.48835 * 304.95134 * 16 15 13 18 18 C 1.50699 * 120.81424 * 359.97305 * 17 16 15 19 19 C 1.38501 * 118.36179 * 180.24612 * 17 16 15 20 20 C 1.38277 * 119.23641 * 359.45809 * 19 17 16 21 21 N 1.31858 * 120.91412 * 0.55313 * 20 19 17 22 22 C 1.31820 * 121.79453 * 359.71966 * 21 20 19 23 23 C 1.50704 * 119.66749 * 179.97438 * 22 21 20 24 24 H 1.08994 * 109.47821 * 299.99973 * 1 2 3 25 25 H 1.08998 * 109.46795 * 60.00570 * 1 2 3 26 26 H 1.09008 * 109.46690 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.47520 * 239.99604 * 2 1 3 28 28 H 1.08998 * 109.46795 * 119.99430 * 2 1 3 29 29 H 1.08999 * 109.47234 * 30.00133 * 4 3 2 30 30 H 1.08996 * 109.47334 * 150.00839 * 4 3 2 31 31 H 0.97006 * 119.99510 * 180.02562 * 8 7 5 32 32 H 0.97008 * 119.99342 * 353.75909 * 15 13 3 33 33 H 1.08998 * 109.47227 * 96.06821 * 18 17 16 34 34 H 1.08997 * 109.47413 * 336.05963 * 18 17 16 35 35 H 1.09010 * 109.46866 * 216.06295 * 18 17 16 36 36 H 1.07997 * 120.38170 * 179.69847 * 19 17 16 37 37 H 1.07996 * 119.54158 * 180.27133 * 20 19 17 38 38 H 1.09002 * 109.46919 * 269.24739 * 23 22 21 39 39 H 1.09004 * 109.46767 * 29.24227 * 23 22 21 40 40 H 1.08996 * 109.47178 * 149.23929 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2624 2.0718 -1.2687 5 6 3.6857 1.8351 -1.7037 6 1 4.3429 1.2311 -1.0956 7 6 4.1494 2.3906 -2.8773 8 7 3.3493 3.1266 -3.6175 9 14 5.9135 2.0966 -3.4169 10 1 6.1403 0.6399 -3.5952 11 1 6.1610 2.7966 -4.7028 12 1 6.8413 2.6190 -2.3817 13 6 2.2428 2.0166 1.1672 14 8 2.6484 3.1629 1.1672 15 7 2.0178 1.3815 2.3344 16 6 2.3732 1.9915 3.5430 17 6 3.6770 2.4330 3.7552 18 6 4.7317 2.2643 2.6921 19 6 3.9815 3.0258 4.9693 20 6 2.9870 3.1691 5.9192 21 7 1.7618 2.7403 5.6873 22 6 1.4311 2.1659 4.5479 23 6 0.0162 1.6931 4.3339 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 1.5816 1.6877 -2.0284 30 1 2.0954 3.1410 -1.1384 31 1 3.6755 3.5171 -4.4435 32 1 1.6095 0.5015 2.3369 33 1 4.8133 3.1835 2.1121 34 1 4.4547 1.4418 2.0327 35 1 5.6903 2.0455 3.1629 36 1 4.9833 3.3755 5.1703 37 1 3.2179 3.6345 6.8660 38 1 -0.0740 0.6571 4.6608 39 1 -0.6665 2.3169 4.9110 40 1 -0.2343 1.7633 3.2755 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000287702063.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:19:48 Heat of formation + Delta-G solvation = -14.538516 kcal Electronic energy + Delta-G solvation = -22188.393910 eV Core-core repulsion = 19002.437883 eV Total energy + Delta-G solvation = -3185.956028 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.08446 -40.51102 -37.15885 -36.19416 -35.00051 -34.74348 -32.14526 -31.62128 -29.18126 -28.90865 -27.94812 -25.18891 -24.41189 -23.32864 -22.25652 -20.90730 -19.39000 -18.59420 -18.20791 -17.78535 -16.89064 -16.56277 -16.05781 -15.89008 -15.58754 -15.06217 -14.66642 -14.59307 -14.43968 -14.21010 -13.81947 -13.71093 -13.50127 -13.26124 -13.14601 -13.08618 -13.01868 -12.68761 -12.60733 -12.50631 -12.18128 -11.95738 -11.74899 -11.32139 -11.15091 -10.62042 -10.45639 -10.20558 -9.59850 -9.22941 -8.19790 -6.34151 0.08216 0.25884 1.37254 1.40891 1.48040 1.74225 2.21777 2.40211 2.78719 3.01552 3.10537 3.44183 3.65685 3.84610 4.05641 4.14238 4.32213 4.37759 4.42644 4.52845 4.60142 4.63924 4.70153 4.74845 4.84564 4.96867 5.00547 5.03943 5.15376 5.18749 5.22238 5.29364 5.37303 5.44745 5.58527 5.79129 5.89730 6.06210 6.08923 6.74480 7.00285 7.07571 7.32872 7.68793 8.86608 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020412 B = 0.005548 C = 0.004671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.442093 B = 5045.448304 C = 5993.609588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.099 3.901 3 N -0.613 5.613 4 C 0.281 3.719 5 C -0.538 4.538 6 H 0.053 0.947 7 C 0.010 3.990 8 N -0.929 5.929 9 Si 0.964 3.036 10 H -0.261 1.261 11 H -0.280 1.280 12 H -0.278 1.278 13 C 0.701 3.299 14 O -0.621 6.621 15 N -0.675 5.675 16 C 0.094 3.906 17 C -0.052 4.052 18 C -0.100 4.100 19 C -0.168 4.168 20 C 0.092 3.908 21 N -0.494 5.494 22 C 0.109 3.891 23 C -0.099 4.099 24 H 0.058 0.942 25 H 0.041 0.959 26 H 0.098 0.902 27 H 0.078 0.922 28 H 0.090 0.910 29 H 0.026 0.974 30 H -0.004 1.004 31 H 0.266 0.734 32 H 0.416 0.584 33 H 0.056 0.944 34 H 0.046 0.954 35 H 0.091 0.909 36 H 0.161 0.839 37 H 0.192 0.808 38 H 0.102 0.898 39 H 0.082 0.918 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.242 -8.400 16.412 18.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.023 4.023 3 N -0.348 5.348 4 C 0.159 3.841 5 C -0.577 4.577 6 H 0.071 0.929 7 C -0.189 4.189 8 N -0.568 5.568 9 Si 0.788 3.212 10 H -0.185 1.185 11 H -0.205 1.205 12 H -0.204 1.204 13 C 0.403 3.597 14 O -0.500 6.500 15 N -0.329 5.329 16 C -0.002 4.002 17 C -0.062 4.062 18 C -0.156 4.156 19 C -0.188 4.188 20 C -0.065 4.065 21 N -0.205 5.205 22 C -0.031 4.031 23 C -0.156 4.156 24 H 0.077 0.923 25 H 0.060 0.940 26 H 0.117 0.883 27 H 0.097 0.903 28 H 0.108 0.892 29 H 0.043 0.957 30 H 0.014 0.986 31 H 0.075 0.925 32 H 0.257 0.743 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.110 0.890 36 H 0.179 0.821 37 H 0.208 0.792 38 H 0.120 0.880 39 H 0.101 0.899 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.613 -7.429 16.773 18.697 hybrid contribution 1.385 -0.117 -1.577 2.102 sum -2.228 -7.545 15.196 17.112 Atomic orbital electron populations 1.22188 0.94359 1.03695 1.01843 1.21703 0.95458 0.81464 1.03705 1.47442 1.67694 1.14963 1.04666 1.18614 0.95271 0.91216 0.79004 1.21661 0.97827 1.31827 1.06344 0.92899 1.25800 1.02102 0.94541 0.96473 1.70047 1.37727 1.34256 1.14811 0.85529 0.79369 0.78960 0.77321 1.18526 1.20524 1.20372 1.15999 0.78653 0.84167 0.80858 1.90878 1.53765 1.18867 1.86501 1.42367 1.66854 1.21723 1.01960 1.18301 0.93058 1.01644 0.87215 1.20649 0.93703 0.96036 0.95828 1.20643 0.97093 1.01632 0.96272 1.22210 1.02934 1.00862 0.92759 1.23222 0.87445 0.95624 1.00177 1.67573 1.21256 1.11028 1.20599 1.21672 0.96619 0.95391 0.89439 1.20707 0.89191 1.02989 1.02688 0.92333 0.93979 0.88310 0.90308 0.89220 0.95653 0.98582 0.92492 0.74317 0.92573 0.93505 0.89045 0.82101 0.79167 0.88012 0.89903 0.91251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.81 10.24 71.98 0.74 -3.08 16 2 C 0.10 2.92 5.84 86.38 0.50 3.42 16 3 N -0.61 -25.68 2.46 -844.22 -2.07 -27.75 16 4 C 0.28 15.00 5.16 85.63 0.44 15.44 16 5 C -0.54 -30.58 9.39 25.60 0.24 -30.34 16 6 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 7 C 0.01 0.56 5.46 84.65 0.46 1.02 16 8 N -0.93 -55.96 13.29 21.45 0.28 -55.67 16 9 Si 0.96 44.57 29.54 68.60 2.03 46.60 16 10 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 11 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 12 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 13 C 0.70 29.66 6.54 179.06 1.17 30.83 16 14 O -0.62 -32.70 13.64 -4.01 -0.05 -32.76 16 15 N -0.67 -21.29 3.70 -316.86 -1.17 -22.46 16 16 C 0.09 2.98 5.77 38.24 0.22 3.20 16 17 C -0.05 -1.66 5.54 -19.55 -0.11 -1.77 16 18 C -0.10 -3.41 8.41 71.24 0.60 -2.81 16 19 C -0.17 -4.16 9.83 22.34 0.22 -3.94 16 20 C 0.09 2.13 11.18 84.70 0.95 3.07 16 21 N -0.49 -13.41 10.27 -183.39 -1.88 -15.30 16 22 C 0.11 3.03 6.80 42.71 0.29 3.32 16 23 C -0.10 -2.07 9.88 71.24 0.70 -1.36 16 24 H 0.06 1.28 8.14 -2.39 -0.02 1.27 16 25 H 0.04 1.17 8.14 -2.39 -0.02 1.16 16 26 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 27 H 0.08 2.45 8.07 -2.39 -0.02 2.43 16 28 H 0.09 2.05 6.46 -2.39 -0.02 2.03 16 29 H 0.03 1.38 8.07 -2.39 -0.02 1.36 16 30 H 0.00 -0.25 7.42 -2.39 -0.02 -0.27 16 31 H 0.27 15.12 8.31 -92.70 -0.77 14.35 16 32 H 0.42 10.02 6.59 -92.70 -0.61 9.41 16 33 H 0.06 2.33 7.33 -2.39 -0.02 2.31 16 34 H 0.05 1.75 6.53 -2.39 -0.02 1.74 16 35 H 0.09 2.45 8.13 -2.38 -0.02 2.43 16 36 H 0.16 2.99 8.06 -2.91 -0.02 2.96 16 37 H 0.19 2.83 8.06 -2.91 -0.02 2.81 16 38 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 40 H 0.07 1.52 7.47 -2.39 -0.02 1.50 16 Total: -1.00 -75.73 333.25 3.99 -71.74 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: 0.43 Total: 18.59 kcal Atomic # 6 Polarization: 10.58 SS G_CDS: 6.43 Total: 17.01 kcal Atomic # 7 Polarization: -116.34 SS G_CDS: -4.84 Total: -121.18 kcal Atomic # 8 Polarization: -32.70 SS G_CDS: -0.05 Total: -32.76 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -75.73 3.99 -71.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287702063.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.202 kcal (2) G-P(sol) polarization free energy of solvation -75.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds