Wall clock time and date at job start Mon Mar 30 2020 20:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50697 * 120.00493 * 2 1 4 4 N 1.46905 * 109.46732 * 124.11440 * 3 2 1 5 5 C 1.46896 * 110.99817 * 211.00127 * 4 3 2 6 6 C 1.50707 * 109.47109 * 66.05041 * 5 4 3 7 7 H 1.07999 * 119.99456 * 359.97438 * 6 5 4 8 8 C 1.37874 * 119.99965 * 179.97438 * 6 5 4 9 9 N 1.31518 * 120.00251 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 119.99830 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47214 * 60.00107 * 10 8 6 12 12 H 1.48501 * 109.47119 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47409 * 299.99866 * 10 8 6 14 14 C 1.46898 * 110.99547 * 87.05381 * 4 3 2 15 15 C 1.53003 * 109.46897 * 287.23032 * 14 4 3 16 16 H 1.09002 * 109.47034 * 63.09630 * 15 14 4 17 17 C 1.52998 * 109.47203 * 303.08779 * 15 14 4 18 18 C 1.50705 * 109.46992 * 183.08910 * 15 14 4 19 19 C 1.38241 * 119.97248 * 59.72738 * 18 15 14 20 20 C 1.38204 * 120.02478 * 179.72344 * 19 18 15 21 21 C 1.38464 * 119.97167 * 0.52784 * 20 19 18 22 22 F 1.35102 * 120.02495 * 179.72484 * 21 20 19 23 23 C 1.38458 * 119.94508 * 359.74885 * 21 20 19 24 24 C 1.38191 * 119.98021 * 359.97438 * 23 21 20 25 25 H 1.07997 * 120.00543 * 179.97438 * 1 2 3 26 26 H 1.08001 * 119.99728 * 359.97438 * 1 2 3 27 27 H 1.08004 * 119.99260 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.47010 * 4.12362 * 3 2 1 29 29 H 1.08999 * 109.47632 * 244.11700 * 3 2 1 30 30 H 1.09000 * 109.47315 * 186.05256 * 5 4 3 31 31 H 1.08998 * 109.47781 * 306.05083 * 5 4 3 32 32 H 0.97002 * 119.99873 * 179.97438 * 9 8 6 33 33 H 1.09004 * 109.47088 * 167.23285 * 14 4 3 34 34 H 1.09000 * 109.47586 * 47.23407 * 14 4 3 35 35 H 1.08996 * 109.47200 * 300.00062 * 17 15 14 36 36 H 1.09002 * 109.46665 * 60.00392 * 17 15 14 37 37 H 1.09000 * 109.46743 * 179.97438 * 17 15 14 38 38 H 1.07998 * 119.99084 * 359.97438 * 19 18 15 39 39 H 1.07995 * 120.01708 * 180.25203 * 20 19 18 40 40 H 1.08008 * 120.00842 * 179.97438 * 23 21 20 41 41 H 1.08004 * 119.98865 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9811 1.3405 1.1467 5 6 3.1674 2.7154 1.6294 6 6 1.8682 3.2300 2.1938 7 1 0.9918 2.5990 2.1934 8 6 1.7986 4.5064 2.7105 9 7 2.8661 5.2746 2.7114 10 14 0.1885 5.1440 3.4106 11 1 -0.2391 4.2768 4.5378 12 1 0.3771 6.5334 3.8996 13 1 -0.8525 5.1284 2.3517 14 6 4.2700 0.7220 0.8089 15 6 4.0986 -0.7955 0.7160 16 1 3.4099 -1.0345 -0.0944 17 6 3.5371 -1.3271 2.0362 18 6 5.4354 -1.4363 0.4443 19 6 6.4768 -1.2668 1.3375 20 6 7.7014 -1.8586 1.0923 21 6 7.8882 -2.6125 -0.0539 22 9 9.0865 -3.1869 -0.2974 23 6 6.8460 -2.7768 -0.9506 24 6 5.6207 -2.1888 -0.7005 25 1 -0.5401 -0.9352 -0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8498 -0.9354 -0.0004 28 1 1.3576 2.1322 0.0739 29 1 2.6338 1.3954 -0.9245 30 1 3.9313 2.7271 2.4069 31 1 3.4814 3.3516 0.8020 32 1 2.8170 6.1727 3.0746 33 1 5.0004 0.9585 1.5827 34 1 4.6181 1.1077 -0.1493 35 1 4.2260 -1.0882 2.8464 36 1 2.5703 -0.8637 2.2326 37 1 3.4147 -2.4082 1.9698 38 1 6.3322 -0.6750 2.2293 39 1 8.5136 -1.7295 1.7923 40 1 6.9907 -3.3643 -1.8453 41 1 4.8076 -2.3172 -1.3996 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292797687.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:20:08 Heat of formation + Delta-G solvation = -1.950691 kcal Electronic energy + Delta-G solvation = -21206.743979 eV Core-core repulsion = 18001.413838 eV Total energy + Delta-G solvation = -3205.330140 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.94066 -39.55895 -37.43514 -34.02552 -33.14714 -31.96966 -31.19991 -28.99360 -27.22707 -26.03525 -24.33375 -23.22737 -22.64058 -20.86598 -19.58048 -19.33801 -17.73306 -16.50125 -16.29657 -15.72328 -15.64057 -15.20768 -14.70626 -14.35942 -14.02484 -13.81686 -13.54579 -13.49085 -13.19081 -12.84058 -12.62547 -12.26150 -12.13231 -11.88524 -11.55714 -11.22506 -11.04082 -10.94479 -10.85735 -10.68316 -10.50927 -10.35710 -10.01386 -9.85321 -9.26891 -9.16162 -8.84364 -8.52437 -8.45690 -7.27152 -6.04287 -4.05575 1.11061 1.17932 2.78534 3.32274 3.36714 3.39550 3.54583 4.20835 4.40581 4.61832 4.72575 4.81488 5.10863 5.18780 5.24504 5.31166 5.39147 5.47645 5.62516 5.65643 5.77116 5.84188 5.99887 6.04121 6.06817 6.11090 6.17392 6.23569 6.31325 6.34133 6.39962 6.57121 6.68973 6.78910 6.87097 7.08945 7.23923 7.32186 7.34221 7.79963 8.06310 8.17948 8.52429 9.02486 9.58778 11.06384 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024046 B = 0.003934 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.153883 B = 7116.578445 C = 7884.433858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.134 4.134 3 C 0.079 3.921 4 N -0.527 5.527 5 C 0.194 3.806 6 C -0.507 4.507 7 H 0.064 0.936 8 C 0.056 3.944 9 N -0.899 5.899 10 Si 0.896 3.104 11 H -0.276 1.276 12 H -0.288 1.288 13 H -0.277 1.277 14 C 0.063 3.937 15 C -0.055 4.055 16 H 0.083 0.917 17 C -0.133 4.133 18 C -0.074 4.074 19 C -0.084 4.084 20 C -0.151 4.151 21 C 0.083 3.917 22 F -0.146 7.146 23 C -0.153 4.153 24 C -0.092 4.092 25 H 0.087 0.913 26 H 0.094 0.906 27 H 0.106 0.894 28 H 0.089 0.911 29 H 0.030 0.970 30 H 0.030 0.970 31 H -0.010 1.010 32 H 0.262 0.738 33 H 0.068 0.932 34 H 0.025 0.975 35 H 0.051 0.949 36 H 0.082 0.918 37 H 0.040 0.960 38 H 0.135 0.865 39 H 0.133 0.867 40 H 0.131 0.869 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.122 -14.952 -6.076 16.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.152 4.152 3 C -0.049 4.049 4 N -0.251 5.251 5 C 0.069 3.931 6 C -0.546 4.546 7 H 0.082 0.918 8 C -0.145 4.145 9 N -0.538 5.538 10 Si 0.724 3.276 11 H -0.202 1.202 12 H -0.214 1.214 13 H -0.203 1.203 14 C -0.066 4.066 15 C -0.074 4.074 16 H 0.101 0.899 17 C -0.190 4.190 18 C -0.075 4.075 19 C -0.102 4.102 20 C -0.170 4.170 21 C 0.064 3.936 22 F -0.125 7.125 23 C -0.172 4.172 24 C -0.110 4.110 25 H 0.106 0.894 26 H 0.113 0.887 27 H 0.124 0.876 28 H 0.107 0.893 29 H 0.048 0.952 30 H 0.049 0.951 31 H 0.008 0.992 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.043 0.957 35 H 0.070 0.930 36 H 0.100 0.900 37 H 0.059 0.941 38 H 0.153 0.847 39 H 0.150 0.850 40 H 0.149 0.851 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 5.033 -15.027 -5.633 16.819 hybrid contribution -0.096 0.788 -0.272 0.839 sum 4.937 -14.239 -5.905 16.186 Atomic orbital electron populations 1.23718 0.96121 1.01100 1.03303 1.23277 0.95788 0.98737 0.97399 1.21267 0.96416 0.95685 0.91492 1.62032 1.08877 1.23037 1.31161 1.19748 0.97772 0.81186 0.94360 1.21125 0.96244 0.98124 1.39069 0.91804 1.24975 0.96543 0.96848 0.96145 1.69949 1.28449 1.08988 1.46437 0.86586 0.83722 0.77744 0.79514 1.20163 1.21410 1.20295 1.22165 0.93036 0.92291 0.99060 1.20442 0.91757 0.95381 0.99818 0.89935 1.21726 1.02976 0.98826 0.95446 1.20171 0.96373 0.96912 0.94046 1.20995 0.91461 0.98104 0.99643 1.21152 0.99207 0.99536 0.97093 1.17712 0.81321 0.98043 0.96553 1.91475 1.43595 1.82928 1.94454 1.21087 0.93027 1.03066 1.00045 1.20958 0.96463 0.96615 0.96957 0.89425 0.88741 0.87592 0.89309 0.95159 0.95144 0.99217 0.92881 0.91313 0.95733 0.92973 0.89960 0.94132 0.84702 0.84953 0.85100 0.85203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.02 14.32 29.02 0.42 -2.61 16 2 C -0.13 -2.08 8.13 -36.03 -0.29 -2.37 16 3 C 0.08 1.46 5.17 -4.97 -0.03 1.44 16 4 N -0.53 -10.55 3.48 -237.51 -0.83 -11.37 16 5 C 0.19 4.85 4.68 -4.97 -0.02 4.83 16 6 C -0.51 -13.77 8.13 -34.44 -0.28 -14.05 16 7 H 0.06 1.72 7.49 -52.49 -0.39 1.33 16 8 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -26.24 13.29 55.43 0.74 -25.50 16 10 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 13 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 14 C 0.06 1.06 4.28 -3.82 -0.02 1.04 16 15 C -0.06 -0.75 2.03 -91.77 -0.19 -0.94 16 16 H 0.08 1.07 4.93 -51.93 -0.26 0.82 16 17 C -0.13 -1.82 8.35 37.16 0.31 -1.51 16 18 C -0.07 -0.92 4.78 -104.62 -0.50 -1.42 16 19 C -0.08 -1.02 8.67 -39.59 -0.34 -1.36 16 20 C -0.15 -1.74 10.03 -39.51 -0.40 -2.14 16 21 C 0.08 0.99 7.30 -39.42 -0.29 0.70 16 22 F -0.15 -1.80 17.27 2.25 0.04 -1.76 16 23 C -0.15 -1.67 10.03 -39.52 -0.40 -2.07 16 24 C -0.09 -1.02 9.67 -39.60 -0.38 -1.40 16 25 H 0.09 1.10 8.06 -52.49 -0.42 0.68 16 26 H 0.09 1.47 7.84 -52.49 -0.41 1.05 16 27 H 0.11 1.47 4.93 -52.48 -0.26 1.21 16 28 H 0.09 1.86 6.28 -51.93 -0.33 1.53 16 29 H 0.03 0.53 7.56 -51.93 -0.39 0.14 16 30 H 0.03 0.82 7.85 -51.93 -0.41 0.41 16 31 H -0.01 -0.27 8.12 -51.93 -0.42 -0.69 16 32 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 33 H 0.07 1.18 6.92 -51.93 -0.36 0.82 16 34 H 0.02 0.42 7.71 -51.93 -0.40 0.02 16 35 H 0.05 0.72 7.40 -51.93 -0.38 0.33 16 36 H 0.08 1.31 6.72 -51.93 -0.35 0.96 16 37 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.14 1.57 7.08 -52.49 -0.37 1.20 16 39 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 40 H 0.13 1.16 8.06 -52.48 -0.42 0.73 16 41 H 0.13 1.20 7.94 -52.48 -0.42 0.78 16 LS Contribution 335.33 15.07 5.05 5.05 Total: -1.00 -28.57 335.33 -8.50 -37.07 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -5.97 Total: 0.60 kcal Atomic # 6 Polarization: -17.88 SS G_CDS: -2.50 Total: -20.38 kcal Atomic # 7 Polarization: -36.78 SS G_CDS: -0.09 Total: -36.87 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.04 Total: -1.76 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -28.57 -8.50 -37.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292797687.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.119 kcal (2) G-P(sol) polarization free energy of solvation -28.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds