Wall clock time and date at job start Mon Mar 30 2020 20:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40289 * 126.09419 * 2 1 4 4 C 1.31073 * 108.26931 * 180.19565 * 3 2 1 5 5 C 1.39296 * 108.08110 * 359.76666 * 4 3 2 6 6 C 1.34326 * 126.08641 * 179.85007 * 2 1 3 7 7 C 1.50826 * 128.03783 * 0.11863 * 6 2 1 8 8 C 1.53360 * 108.38167 * 163.11289 * 7 6 2 9 9 H 1.09001 * 109.46471 * 289.93337 * 8 7 6 10 10 C 1.50708 * 109.46068 * 169.96001 * 8 7 6 11 11 O 1.21271 * 120.00178 * 359.97438 * 10 8 7 12 12 N 1.34776 * 119.99807 * 179.97438 * 10 8 7 13 13 C 1.46501 * 120.00196 * 179.97438 * 12 10 8 14 14 C 1.52995 * 109.47203 * 179.97438 * 13 12 10 15 15 C 1.50699 * 109.47180 * 180.02562 * 14 13 12 16 16 H 1.08007 * 119.99692 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00254 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00132 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00225 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47026 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47057 * 119.99851 * 19 17 15 22 22 H 1.48497 * 109.47507 * 240.00389 * 19 17 15 23 23 C 1.53104 * 109.50923 * 49.94886 * 8 7 6 24 24 C 1.50835 * 127.90376 * 180.09871 * 5 4 3 25 25 H 1.09009 * 109.46902 * 270.15244 * 1 2 3 26 26 H 1.09001 * 109.47005 * 30.14587 * 1 2 3 27 27 H 1.08996 * 109.47394 * 150.15185 * 1 2 3 28 28 H 1.08004 * 125.96060 * 179.74179 * 4 3 2 29 29 H 1.09004 * 109.67964 * 282.83497 * 7 6 2 30 30 H 1.08998 * 109.67758 * 43.38555 * 7 6 2 31 31 H 0.97006 * 119.99835 * 0.02562 * 12 10 8 32 32 H 1.08991 * 109.46996 * 300.00957 * 13 12 10 33 33 H 1.09002 * 109.46657 * 60.00596 * 13 12 10 34 34 H 1.09003 * 109.47700 * 300.00753 * 14 13 12 35 35 H 1.09002 * 109.46824 * 60.00702 * 14 13 12 36 36 H 0.96995 * 120.00412 * 179.97438 * 18 17 15 37 37 H 1.09005 * 109.46717 * 49.74183 * 23 8 7 38 38 H 1.08998 * 109.46344 * 169.72420 * 23 8 7 39 39 H 1.08998 * 109.68365 * 43.66327 * 24 5 4 40 40 H 1.09000 * 109.68502 * 283.10463 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2914 1.1336 0.0000 4 6 3.5392 0.7324 -0.0043 5 6 3.5455 -0.6606 -0.0017 6 6 2.2562 -1.0855 0.0028 7 6 1.8436 -2.5363 0.0042 8 6 3.0515 -3.3830 -0.4154 9 1 3.2618 -3.2172 -1.4720 10 6 2.7462 -4.8410 -0.1870 11 8 1.6711 -5.1717 0.2662 12 7 3.6681 -5.7774 -0.4866 13 6 3.3716 -7.1948 -0.2641 14 6 4.5760 -8.0397 -0.6840 15 6 4.2709 -9.4977 -0.4557 16 1 3.3133 -9.7923 -0.0520 17 6 5.2138 -10.4557 -0.7622 18 7 6.3799 -10.0971 -1.2534 19 14 4.8358 -12.2629 -0.4787 20 1 3.4660 -12.4006 0.0781 21 1 4.9215 -12.9948 -1.7679 22 1 5.8190 -12.8301 0.4788 23 6 4.2718 -2.9807 0.4171 24 6 4.7398 -1.5819 -0.0027 25 1 -0.3633 0.0027 1.0278 26 1 -0.3633 0.8887 -0.5161 27 1 -0.3634 -0.8913 -0.5114 28 1 4.4106 1.3705 -0.0093 29 1 1.5222 -2.8256 1.0048 30 1 1.0269 -2.6862 -0.7020 31 1 4.5282 -5.5129 -0.8488 32 1 3.1615 -7.3605 0.7924 33 1 2.5029 -7.4816 -0.8567 34 1 4.7858 -7.8738 -1.7407 35 1 5.4451 -7.7531 -0.0917 36 1 7.0435 -10.7709 -1.4687 37 1 4.0040 -2.9722 1.4737 38 1 5.0763 -3.6974 0.2521 39 1 5.4856 -1.2169 0.7035 40 1 5.1703 -1.6237 -1.0032 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330406354.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:20:17 Heat of formation + Delta-G solvation = 14.957413 kcal Electronic energy + Delta-G solvation = -20916.257350 eV Core-core repulsion = 17731.580361 eV Total energy + Delta-G solvation = -3184.676988 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.71063 -39.55134 -36.26333 -34.93140 -33.81414 -32.87207 -30.46152 -30.31614 -29.11357 -26.77658 -25.23395 -23.64925 -22.54191 -21.13499 -20.95439 -19.94880 -18.80153 -17.31087 -16.53643 -16.25551 -15.68422 -15.23218 -15.07727 -14.59414 -14.43322 -14.31544 -13.89971 -13.59524 -13.26226 -13.08418 -13.03914 -12.70843 -12.56960 -12.32018 -11.96303 -11.69562 -11.22381 -11.09085 -10.99398 -10.87520 -10.65011 -10.63182 -10.36135 -9.79945 -9.47142 -9.40281 -9.17725 -8.57511 -8.38483 -8.33487 -6.11601 -4.14446 1.71167 2.31395 2.65326 2.93595 3.26805 3.34471 3.38985 3.59436 4.31604 4.38019 4.46592 4.54964 4.72791 4.88839 4.90742 4.94069 5.14428 5.20952 5.24153 5.25647 5.26419 5.43834 5.50182 5.72853 5.77044 5.81311 5.97059 6.11842 6.18259 6.31441 6.32043 6.53026 6.70884 6.85580 6.88616 7.49224 7.55752 7.59075 7.86547 7.97250 8.25212 8.59882 8.91813 9.50672 11.00004 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.042776 B = 0.002960 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.420711 B = 9458.291579 C =10001.979365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.368 5.368 3 N -0.306 5.306 4 C 0.055 3.945 5 C -0.244 4.244 6 C 0.091 3.909 7 C -0.035 4.035 8 C -0.100 4.100 9 H 0.101 0.899 10 C 0.511 3.489 11 O -0.553 6.553 12 N -0.719 5.719 13 C 0.121 3.879 14 C 0.012 3.988 15 C -0.521 4.521 16 H 0.059 0.941 17 C 0.059 3.941 18 N -0.894 5.894 19 Si 0.896 3.104 20 H -0.271 1.271 21 H -0.283 1.283 22 H -0.283 1.283 23 C -0.112 4.112 24 C -0.037 4.037 25 H 0.075 0.925 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.182 0.818 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.398 0.602 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.022 0.978 35 H 0.023 0.977 36 H 0.262 0.738 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.502 20.300 1.235 21.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.150 5.150 3 N -0.127 5.127 4 C -0.130 4.130 5 C -0.256 4.256 6 C -0.038 4.038 7 C -0.074 4.074 8 C -0.122 4.122 9 H 0.119 0.881 10 C 0.296 3.704 11 O -0.431 6.431 12 N -0.369 5.369 13 C -0.001 4.001 14 C -0.025 4.025 15 C -0.560 4.560 16 H 0.078 0.922 17 C -0.143 4.143 18 N -0.533 5.533 19 Si 0.724 3.276 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.209 1.209 23 C -0.150 4.150 24 C -0.075 4.075 25 H 0.093 0.907 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.199 0.801 29 H 0.114 0.886 30 H 0.102 0.898 31 H 0.232 0.768 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.041 0.959 35 H 0.041 0.959 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.071 20.988 1.502 22.198 hybrid contribution 0.793 -1.507 -0.108 1.706 sum -6.277 19.481 1.395 20.515 Atomic orbital electron populations 1.21870 0.74383 1.04492 1.03494 1.48172 1.06453 1.03461 1.56886 1.77497 1.01577 1.07577 1.26091 1.23557 0.95177 0.94476 0.99803 1.19935 0.94197 0.93814 1.17611 1.20953 0.91104 0.90646 1.01083 1.20079 0.97596 0.85729 1.04036 1.21296 0.96395 0.92013 1.02528 0.88090 1.20382 0.84483 0.87451 0.78064 1.90665 1.24163 1.82810 1.45487 1.46330 1.17898 1.08150 1.64489 1.21731 1.00732 0.77246 1.00410 1.19327 0.91843 0.94188 0.97168 1.21088 1.01072 0.90796 1.43057 0.92226 1.24994 0.94966 0.99370 0.94961 1.69958 1.05794 1.33789 1.43723 0.86466 0.78516 0.84743 0.77901 1.19595 1.20933 1.20916 1.21627 0.96242 0.97073 1.00067 1.19971 0.93907 0.91936 1.01690 0.90674 0.89327 0.89336 0.80134 0.88626 0.89806 0.76779 0.92541 0.92589 0.95939 0.95896 0.92878 0.91016 0.90359 0.90678 0.90960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.74 11.32 59.85 0.68 1.42 16 2 N -0.37 -4.19 4.00 -63.87 -0.26 -4.44 16 3 N -0.31 -3.85 12.59 30.55 0.38 -3.46 16 4 C 0.05 0.59 12.00 -17.48 -0.21 0.38 16 5 C -0.24 -2.68 5.91 -105.05 -0.62 -3.30 16 6 C 0.09 1.04 6.73 -82.33 -0.55 0.49 16 7 C -0.04 -0.39 4.63 -27.64 -0.13 -0.52 16 8 C -0.10 -1.15 2.50 -91.53 -0.23 -1.38 16 9 H 0.10 1.04 8.11 -51.93 -0.42 0.62 16 10 C 0.51 7.99 7.15 -10.98 -0.08 7.92 16 11 O -0.55 -10.62 15.82 5.57 0.09 -10.54 16 12 N -0.72 -11.80 5.37 -60.30 -0.32 -12.12 16 13 C 0.12 2.49 5.61 -4.04 -0.02 2.47 16 14 C 0.01 0.29 5.09 -27.89 -0.14 0.15 16 15 C -0.52 -14.25 9.11 -34.44 -0.31 -14.56 16 16 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.89 -25.77 13.29 55.43 0.74 -25.04 16 19 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 20 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 C -0.11 -1.13 5.17 -26.49 -0.14 -1.27 16 24 C -0.04 -0.33 6.28 -27.63 -0.17 -0.50 16 25 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 26 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.09 0.53 7.56 -51.93 -0.39 0.14 16 28 H 0.18 1.39 8.06 -52.48 -0.42 0.96 16 29 H 0.10 1.16 7.79 -51.93 -0.40 0.75 16 30 H 0.08 0.89 7.75 -51.93 -0.40 0.49 16 31 H 0.40 5.61 7.81 -40.82 -0.32 5.29 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 37 H 0.07 0.78 8.11 -51.93 -0.42 0.36 16 38 H 0.08 0.75 7.30 -51.93 -0.38 0.37 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 332.58 15.07 5.01 5.01 Total: -1.00 -33.13 332.58 -7.49 -40.63 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -6.09 Total: 1.02 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: -2.03 Total: -7.18 kcal Atomic # 7 Polarization: -45.60 SS G_CDS: 0.54 Total: -45.06 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.09 Total: -10.54 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.13 -7.49 -40.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330406354.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.583 kcal (2) G-P(sol) polarization free energy of solvation -33.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds