Wall clock time and date at job start Mon Mar 30 2020 20:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46501 * 109.47364 * 2 1 4 4 C 1.46497 * 120.00450 * 264.25181 * 3 2 1 5 5 C 1.50694 * 109.47150 * 265.48529 * 4 3 2 6 6 H 1.08003 * 120.00091 * 359.97438 * 5 4 3 7 7 C 1.37882 * 120.00152 * 179.97438 * 5 4 3 8 8 N 1.31513 * 119.99891 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99939 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47182 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47097 * 120.00266 * 9 7 5 12 12 H 1.48505 * 109.46601 * 240.00169 * 9 7 5 13 13 C 1.34781 * 119.99725 * 84.24659 * 3 2 1 14 14 O 1.21280 * 120.00114 * 5.85608 * 13 3 2 15 15 C 1.50694 * 119.99795 * 185.85202 * 13 3 2 16 16 H 1.09004 * 109.51301 * 312.44040 * 15 13 3 17 17 C 1.53149 * 109.50942 * 192.34943 * 15 13 3 18 18 C 1.53265 * 109.49506 * 170.59013 * 17 15 13 19 19 N 1.46470 * 108.79532 * 50.38518 * 18 17 15 20 20 C 1.36309 * 127.77694 * 162.80439 * 19 18 17 21 21 C 1.34846 * 106.69026 * 180.09268 * 20 19 18 22 22 N 1.34291 * 108.07484 * 359.97438 * 21 20 19 23 23 C 1.30095 * 109.20856 * 359.97438 * 22 21 20 24 24 C 1.51043 * 127.39037 * 180.02562 * 23 22 21 25 25 H 1.08992 * 109.47128 * 299.99801 * 1 2 3 26 26 H 1.09001 * 109.47020 * 60.00425 * 1 2 3 27 27 H 1.09006 * 109.47162 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47731 * 239.99987 * 2 1 3 29 29 H 1.09002 * 109.47323 * 120.00292 * 2 1 3 30 30 H 1.09005 * 109.46929 * 25.48254 * 4 3 2 31 31 H 1.08994 * 109.47484 * 145.47963 * 4 3 2 32 32 H 0.96998 * 119.99914 * 180.02562 * 8 7 5 33 33 H 1.08997 * 109.47125 * 290.60029 * 17 15 13 34 34 H 1.09005 * 109.46859 * 50.59100 * 17 15 13 35 35 H 1.08997 * 109.58743 * 170.16812 * 18 17 15 36 36 H 1.08996 * 109.58840 * 290.59193 * 18 17 15 37 37 H 1.08003 * 126.65485 * 0.10972 * 20 19 18 38 38 H 1.08005 * 125.96630 * 179.97438 * 21 20 19 39 39 H 1.08993 * 109.71443 * 44.36199 * 24 23 22 40 40 H 1.09003 * 109.75000 * 283.74090 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3824 2.0295 -1.2623 5 6 3.8628 1.8752 -1.4976 6 1 4.4718 1.3474 -0.7785 7 6 4.4400 2.4079 -2.6308 8 7 3.6986 3.0511 -3.5062 9 14 6.2753 2.2171 -2.9221 10 1 6.8789 1.4590 -1.7969 11 1 6.5011 1.4810 -4.1919 12 1 6.9046 3.5594 -3.0094 13 6 2.1327 2.0555 1.1614 14 8 1.9336 1.4877 2.2144 15 6 2.5079 3.5150 1.1515 16 1 3.3639 3.6663 0.4937 17 6 2.8694 3.9598 2.5716 18 6 3.4730 5.3679 2.5285 19 7 2.5861 6.2380 1.7528 20 6 2.5628 7.6007 1.7313 21 6 1.5825 7.9578 0.8770 22 7 1.0245 6.8371 0.3911 23 6 1.6200 5.8031 0.9094 24 6 1.3208 4.3458 0.6480 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.8338 1.5640 -2.0812 31 1 2.1308 3.0889 -1.2124 32 1 4.1045 3.4255 -4.3036 33 1 1.9713 3.9683 3.1893 34 1 3.5955 3.2663 2.9959 35 1 3.5691 5.7555 3.5427 36 1 4.4540 5.3306 2.0549 37 1 3.2050 8.2655 2.2900 38 1 1.2959 8.9688 0.6272 39 1 1.1856 4.1843 -0.4214 40 1 0.4159 4.0542 1.1812 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330523474.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:20:27 Heat of formation + Delta-G solvation = 16.727245 kcal Electronic energy + Delta-G solvation = -22401.189573 eV Core-core repulsion = 19216.589331 eV Total energy + Delta-G solvation = -3184.600243 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.06385 -39.46769 -36.05590 -35.20931 -33.18518 -32.73616 -30.50624 -29.57330 -28.28928 -27.03064 -24.55766 -23.45893 -23.03474 -21.59389 -21.12224 -18.87192 -18.16502 -16.92743 -16.75685 -16.18784 -15.72611 -15.42827 -14.66870 -14.46729 -14.17166 -13.83147 -13.60591 -13.52251 -13.36792 -12.83626 -12.65410 -12.28984 -12.04771 -11.77592 -11.66481 -11.53516 -11.38038 -11.00313 -10.95216 -10.80457 -10.68985 -10.49457 -10.11342 -9.78021 -9.68041 -9.33926 -9.09293 -8.60504 -8.07948 -7.77350 -6.22411 -4.30625 2.29427 2.99324 3.17512 3.22888 3.27297 3.31016 3.42512 3.79846 4.28509 4.55737 4.69510 4.82235 4.87960 5.10292 5.15980 5.33497 5.37630 5.46157 5.58858 5.65739 5.74336 5.78681 5.84270 5.86794 5.94100 6.03581 6.19586 6.22651 6.38600 6.43950 6.55652 6.60820 6.74835 7.00605 7.17373 7.40444 7.49115 7.72110 8.00934 8.26087 8.38984 8.73410 8.92780 9.37512 10.83926 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.012467 B = 0.007451 C = 0.005652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.303644 B = 3756.942040 C = 4953.116280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.115 3.885 3 N -0.592 5.592 4 C 0.229 3.771 5 C -0.542 4.542 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.885 5.885 9 Si 0.894 3.106 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.282 1.282 13 C 0.528 3.472 14 O -0.573 6.573 15 C -0.111 4.111 16 H 0.119 0.881 17 C -0.112 4.112 18 C 0.104 3.896 19 N -0.455 5.455 20 C -0.063 4.063 21 C -0.034 4.034 22 N -0.491 5.491 23 C 0.225 3.775 24 C -0.025 4.025 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.038 0.962 31 H 0.045 0.955 32 H 0.266 0.734 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.171 0.829 38 H 0.166 0.834 39 H 0.112 0.888 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.753 3.715 9.290 10.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.009 4.009 3 N -0.322 5.322 4 C 0.110 3.890 5 C -0.581 4.581 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.523 5.523 9 Si 0.721 3.279 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.208 1.208 13 C 0.315 3.685 14 O -0.455 6.455 15 C -0.133 4.133 16 H 0.137 0.863 17 C -0.150 4.150 18 C -0.018 4.018 19 N -0.138 5.138 20 C -0.196 4.196 21 C -0.182 4.182 22 N -0.209 5.209 23 C -0.038 4.038 24 C -0.064 4.064 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.113 0.887 35 H 0.108 0.892 36 H 0.105 0.895 37 H 0.188 0.812 38 H 0.184 0.816 39 H 0.130 0.870 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.385 3.397 9.150 10.047 hybrid contribution 1.898 0.189 0.103 1.910 sum -0.487 3.586 9.253 9.935 Atomic orbital electron populations 1.22121 0.96779 1.01333 1.02007 1.21252 0.93378 0.83778 1.02463 1.48249 1.62212 1.13174 1.08542 1.19634 0.95859 0.93953 0.79563 1.21515 0.93141 1.36737 1.06717 0.92091 1.24943 0.98368 0.94747 0.95669 1.69924 1.35676 1.35652 1.11048 0.86503 0.85031 0.77984 0.78356 1.19675 1.20751 1.20839 1.20052 0.76696 0.88208 0.83525 1.90589 1.53185 1.70397 1.31280 1.21376 1.00910 0.92909 0.98119 0.86332 1.21690 1.02724 0.93664 0.96939 1.22053 0.93512 0.90303 0.95978 1.45435 1.27963 1.06249 1.34124 1.22470 1.05757 0.83563 1.07856 1.22308 0.97884 0.97720 1.00290 1.70064 1.28055 0.97374 1.25450 1.23213 0.90379 0.96735 0.93431 1.20210 0.97504 0.84161 1.04482 0.92768 0.92513 0.92381 0.90371 0.91303 0.94413 0.93719 0.92458 0.90385 0.88747 0.89241 0.89456 0.81206 0.81639 0.87039 0.89575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 10.19 37.15 0.38 -2.12 16 2 C 0.11 2.03 6.10 -4.04 -0.02 2.01 16 3 N -0.59 -11.88 2.48 -175.07 -0.43 -12.32 16 4 C 0.23 5.22 4.77 -5.20 -0.02 5.20 16 5 C -0.54 -13.68 8.81 -34.44 -0.30 -13.98 16 6 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 7 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -24.11 13.29 55.43 0.74 -23.37 16 9 Si 0.89 20.24 29.54 -169.99 -5.02 15.22 16 10 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 13 C 0.53 10.33 6.79 -10.99 -0.07 10.25 16 14 O -0.57 -12.05 15.66 5.56 0.09 -11.96 16 15 C -0.11 -1.94 1.70 -91.49 -0.16 -2.09 16 16 H 0.12 2.31 6.99 -51.93 -0.36 1.95 16 17 C -0.11 -1.59 4.59 -26.52 -0.12 -1.71 16 18 C 0.10 1.27 6.98 -3.92 -0.03 1.24 16 19 N -0.45 -6.85 3.13 -113.76 -0.36 -7.21 16 20 C -0.06 -0.86 11.64 -16.77 -0.20 -1.06 16 21 C -0.03 -0.52 11.87 -17.68 -0.21 -0.73 16 22 N -0.49 -9.18 11.24 -10.62 -0.12 -9.30 16 23 C 0.23 3.98 7.65 -155.24 -1.19 2.80 16 24 C -0.02 -0.43 5.36 -27.51 -0.15 -0.57 16 25 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.08 1.36 8.03 -51.93 -0.42 0.94 16 29 H 0.07 1.23 7.52 -51.93 -0.39 0.84 16 30 H 0.04 0.91 8.04 -51.93 -0.42 0.49 16 31 H 0.05 1.05 4.50 -51.93 -0.23 0.81 16 32 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 33 H 0.08 1.12 8.12 -51.93 -0.42 0.70 16 34 H 0.09 1.30 8.00 -51.93 -0.42 0.89 16 35 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.17 1.65 8.06 -52.48 -0.42 1.23 16 38 H 0.17 2.04 8.06 -52.48 -0.42 1.61 16 39 H 0.11 2.11 5.89 -51.93 -0.31 1.80 16 40 H 0.09 1.41 8.11 -51.93 -0.42 0.99 16 LS Contribution 326.73 15.07 4.92 4.92 Total: -1.00 -30.35 326.73 -8.26 -38.61 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -5.89 Total: 4.54 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: -2.19 Total: 0.86 kcal Atomic # 7 Polarization: -52.02 SS G_CDS: -0.17 Total: -52.19 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: 0.09 Total: -11.96 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.35 -8.26 -38.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330523474.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.339 kcal (2) G-P(sol) polarization free energy of solvation -30.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds